Wall clock time and date at job start Tue Mar 31 2020 22:34:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42901 * 113.99740 * 2 1 4 4 C 1.53005 * 109.46981 * 150.00023 * 3 2 1 5 5 C 1.52999 * 109.47116 * 179.97438 * 4 3 2 6 6 C 1.53000 * 109.47309 * 300.00142 * 5 4 3 7 7 C 1.52999 * 109.47309 * 179.97438 * 6 5 4 8 8 C 1.50698 * 109.47004 * 174.99522 * 7 6 5 9 9 O 1.21283 * 120.00472 * 0.02562 * 8 7 6 10 10 N 1.34777 * 119.99538 * 179.97438 * 8 7 6 11 11 C 1.46499 * 119.99665 * 179.72653 * 10 8 7 12 12 H 1.08999 * 109.47480 * 35.27807 * 11 10 8 13 13 C 1.52999 * 109.47136 * 275.27771 * 11 10 8 14 14 C 1.53005 * 109.47303 * 180.02562 * 13 11 10 15 15 C 1.53002 * 109.46840 * 59.99992 * 14 13 11 16 16 C 1.52999 * 109.47179 * 300.00084 * 15 14 13 17 17 C 1.52992 * 109.46921 * 60.00100 * 16 15 14 18 18 H 1.08999 * 109.47499 * 60.00085 * 17 16 15 19 19 N 1.46505 * 109.47408 * 179.97438 * 17 16 15 20 20 C 1.36938 * 120.00115 * 275.00713 * 19 17 16 21 21 H 1.07996 * 119.99950 * 359.97438 * 20 19 17 22 22 C 1.38811 * 120.00139 * 179.97438 * 20 19 17 23 23 N 1.31618 * 119.99900 * 359.97438 * 22 20 19 24 24 Si 1.86795 * 120.00190 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47059 * 359.97438 * 24 22 20 26 26 H 1.48499 * 109.47285 * 119.99970 * 24 22 20 27 27 H 1.48498 * 109.47535 * 239.99809 * 24 22 20 28 28 C 1.52996 * 109.47228 * 59.99692 * 6 5 4 29 29 C 1.53004 * 109.46658 * 269.99447 * 3 2 1 30 30 H 1.08994 * 109.47255 * 300.00409 * 1 2 3 31 31 H 1.09003 * 109.46983 * 60.00347 * 1 2 3 32 32 H 1.08997 * 109.47140 * 180.02562 * 1 2 3 33 33 H 1.08993 * 109.47330 * 29.99526 * 3 2 1 34 34 H 1.08999 * 109.47089 * 59.99559 * 4 3 2 35 35 H 1.08996 * 109.46590 * 299.99733 * 4 3 2 36 36 H 1.08998 * 109.47220 * 179.97438 * 5 4 3 37 37 H 1.08999 * 109.47090 * 60.00063 * 5 4 3 38 38 H 1.09007 * 109.46792 * 299.99694 * 6 5 4 39 39 H 1.09003 * 109.46690 * 54.99871 * 7 6 5 40 40 H 1.08993 * 109.46773 * 295.00208 * 7 6 5 41 41 H 0.97001 * 120.00485 * 0.02562 * 10 8 7 42 42 H 1.09006 * 109.47500 * 299.99940 * 13 11 10 43 43 H 1.08999 * 109.47488 * 60.00276 * 13 11 10 44 44 H 1.08999 * 109.47389 * 300.00082 * 14 13 11 45 45 H 1.09000 * 109.47657 * 179.97438 * 14 13 11 46 46 H 1.09005 * 109.46967 * 179.97438 * 15 14 13 47 47 H 1.09000 * 109.47442 * 60.00260 * 15 14 13 48 48 H 1.08999 * 109.46965 * 299.99858 * 16 15 14 49 49 H 1.09006 * 109.47222 * 180.02562 * 16 15 14 50 50 H 0.97004 * 120.00056 * 94.99253 * 19 17 16 51 51 H 0.97000 * 120.00145 * 180.02562 * 23 22 20 52 52 H 1.08993 * 109.47302 * 60.00202 * 28 6 5 53 53 H 1.09001 * 109.46864 * 180.02562 * 28 6 5 54 54 H 1.08999 * 109.47481 * 300.00483 * 29 3 2 55 55 H 1.08993 * 109.47012 * 60.00717 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.3589 1.2633 0.7213 5 6 3.9815 2.6609 0.7207 6 6 4.1890 3.1263 -0.7219 7 6 4.8110 4.5241 -0.7225 8 6 5.1286 4.9321 -2.1380 9 8 4.8813 4.1791 -3.0561 10 7 5.6864 6.1341 -2.3838 11 6 6.0007 6.5282 -3.7593 12 1 5.2413 6.1319 -4.4334 13 6 7.3706 5.9697 -4.1495 14 6 7.6991 6.3819 -5.5859 15 6 7.7235 7.9085 -5.6855 16 6 6.3536 8.4670 -5.2953 17 6 6.0252 8.0548 -3.8590 18 1 6.7845 8.4508 -3.1846 19 7 4.7137 8.5900 -3.4850 20 6 4.6075 9.8676 -3.0035 21 1 5.4906 10.4804 -2.8990 22 6 3.3648 10.3749 -2.6496 23 7 2.2885 9.6282 -2.7775 24 14 3.2201 12.1173 -1.9921 25 1 4.5665 12.7419 -1.9448 26 1 2.3366 12.9110 -2.8835 27 1 2.6421 12.0840 -0.6246 28 6 2.8404 3.1684 -1.4432 29 6 2.2177 1.7713 -1.4426 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.3450 1.9994 0.5137 34 1 4.0242 0.5694 0.2075 35 1 3.2111 0.9314 1.7489 36 1 4.9421 2.6310 1.2349 37 1 3.3164 3.3551 1.2343 38 1 4.8542 2.4320 -1.2355 39 1 5.7277 4.5141 -0.1329 40 1 4.1077 5.2348 -0.2885 41 1 5.8838 6.7365 -1.6496 42 1 8.1301 6.3661 -3.4755 43 1 7.3534 4.8822 -4.0782 44 1 6.9398 5.9859 -6.2603 45 1 8.6753 5.9844 -5.8638 46 1 7.9580 8.2021 -6.7087 47 1 8.4828 8.3045 -5.0112 48 1 5.5943 8.0710 -5.9696 49 1 6.3708 9.5546 -5.3667 50 1 3.9205 8.0396 -3.5787 51 1 1.4201 9.9828 -2.5306 52 1 2.1752 3.8626 -0.9297 53 1 2.9883 3.4995 -2.4711 54 1 2.8830 1.0773 -1.9564 55 1 1.2570 1.8013 -1.9564 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085440899.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:00 Heat of formation + Delta-G solvation = -133.461338 kcal Electronic energy + Delta-G solvation = -30857.093007 eV Core-core repulsion = 26891.488004 eV Total energy + Delta-G solvation = -3965.605004 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.24731 -40.18480 -39.15674 -37.45634 -35.80837 -35.00094 -33.01970 -32.90356 -31.72416 -30.65478 -29.45123 -28.09911 -26.67718 -25.60750 -23.74510 -23.53015 -22.58528 -22.22809 -21.27471 -20.81114 -20.55962 -19.13572 -17.88029 -17.57943 -17.31884 -16.73798 -16.64870 -16.19771 -16.00635 -15.74227 -15.43434 -15.20978 -14.97861 -14.87353 -14.69644 -14.59399 -14.26254 -14.07766 -13.83242 -13.58662 -13.50518 -13.25238 -12.95933 -12.90955 -12.82868 -12.80162 -12.43405 -12.20112 -12.15703 -12.04863 -12.00736 -12.00283 -11.77146 -11.63990 -11.56274 -11.49285 -11.41579 -11.18936 -11.07805 -10.95810 -10.59155 -10.30068 -9.82056 -8.98223 -7.90643 -5.19248 1.48016 1.49389 1.58356 1.81155 2.38921 2.57320 2.81071 3.42809 3.69589 3.73356 3.75123 3.83312 3.84949 3.97916 4.14113 4.16394 4.26934 4.28922 4.34031 4.39384 4.44619 4.46498 4.49428 4.52691 4.53910 4.56453 4.59443 4.61444 4.70273 4.71647 4.81446 4.83822 4.94870 4.96692 5.02809 5.04805 5.14463 5.15314 5.20406 5.23164 5.24582 5.29021 5.30367 5.31930 5.47512 5.49810 5.54530 5.55714 5.61131 5.75902 6.28130 6.29295 6.73854 7.36080 7.43281 8.10070 8.34409 9.32497 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.009882 B = 0.002969 C = 0.002454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2832.893401 B = 9427.077478 C =11404.965968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.407 6.407 3 C 0.088 3.912 4 C -0.110 4.110 5 C -0.105 4.105 6 C -0.064 4.064 7 C -0.132 4.132 8 C 0.507 3.493 9 O -0.582 6.582 10 N -0.709 5.709 11 C 0.150 3.850 12 H 0.048 0.952 13 C -0.113 4.113 14 C -0.111 4.111 15 C -0.109 4.109 16 C -0.129 4.129 17 C 0.172 3.828 18 H 0.058 0.942 19 N -0.731 5.731 20 C -0.228 4.228 21 H 0.078 0.922 22 C -0.074 4.074 23 N -0.969 5.969 24 Si 0.967 3.033 25 H -0.265 1.265 26 H -0.301 1.301 27 H -0.295 1.295 28 C -0.115 4.115 29 C -0.131 4.131 30 H 0.051 0.949 31 H 0.039 0.961 32 H 0.098 0.902 33 H 0.065 0.935 34 H 0.064 0.936 35 H 0.080 0.920 36 H 0.090 0.910 37 H 0.072 0.928 38 H 0.066 0.934 39 H 0.122 0.878 40 H 0.096 0.904 41 H 0.407 0.593 42 H 0.078 0.922 43 H 0.056 0.944 44 H 0.050 0.950 45 H 0.086 0.914 46 H 0.071 0.929 47 H 0.072 0.928 48 H 0.038 0.962 49 H 0.049 0.951 50 H 0.368 0.632 51 H 0.247 0.753 52 H 0.055 0.945 53 H 0.053 0.947 54 H 0.058 0.942 55 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.555 -15.059 6.610 18.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.326 6.326 3 C 0.031 3.969 4 C -0.148 4.148 5 C -0.142 4.142 6 C -0.083 4.083 7 C -0.171 4.171 8 C 0.295 3.705 9 O -0.463 6.463 10 N -0.359 5.359 11 C 0.044 3.956 12 H 0.066 0.934 13 C -0.152 4.152 14 C -0.149 4.149 15 C -0.147 4.147 16 C -0.170 4.170 17 C 0.064 3.936 18 H 0.076 0.924 19 N -0.369 5.369 20 C -0.360 4.360 21 H 0.096 0.904 22 C -0.266 4.266 23 N -0.620 5.620 24 Si 0.797 3.203 25 H -0.189 1.189 26 H -0.229 1.229 27 H -0.223 1.223 28 C -0.153 4.153 29 C -0.169 4.169 30 H 0.069 0.931 31 H 0.058 0.942 32 H 0.117 0.883 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.099 0.901 36 H 0.109 0.891 37 H 0.090 0.910 38 H 0.085 0.915 39 H 0.140 0.860 40 H 0.115 0.885 41 H 0.242 0.758 42 H 0.097 0.903 43 H 0.075 0.925 44 H 0.069 0.931 45 H 0.105 0.895 46 H 0.090 0.910 47 H 0.091 0.909 48 H 0.057 0.943 49 H 0.068 0.932 50 H 0.199 0.801 51 H 0.056 0.944 52 H 0.074 0.926 53 H 0.072 0.928 54 H 0.076 0.924 55 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 7.552 -15.562 6.041 18.322 hybrid contribution -1.352 1.472 0.055 2.000 sum 6.200 -14.090 6.096 16.557 Atomic orbital electron populations 1.22940 0.80119 1.03673 1.00445 1.87859 1.20933 1.28659 1.95166 1.22250 0.95711 0.83960 0.94997 1.21546 0.94497 0.97861 1.00868 1.21545 1.02229 0.95545 0.94891 1.20855 0.95968 0.94749 0.96715 1.21776 1.04186 0.98713 0.92461 1.21246 0.75734 0.80954 0.92555 1.90618 1.54437 1.53217 1.47980 1.45979 1.62562 1.17963 1.09346 1.21066 0.96934 0.94411 0.83208 0.93406 1.21790 0.95446 1.00101 0.97896 1.21480 1.02125 0.95873 0.95436 1.21511 0.96053 0.95240 1.01928 1.22097 0.97245 1.00103 0.97527 1.20663 0.87791 0.90468 0.94726 0.92404 1.42581 1.04073 1.13359 1.76930 1.19601 0.92986 0.90849 1.32534 0.90366 1.25465 0.95537 1.01687 1.03937 1.69845 0.98085 1.37681 1.56386 0.85164 0.77635 0.80518 0.76978 1.18880 1.22922 1.22265 1.21582 0.96474 0.96108 1.01142 1.21910 1.00525 0.96885 0.97551 0.93069 0.94227 0.88345 0.91661 0.91691 0.90122 0.89126 0.90964 0.91546 0.86019 0.88520 0.75754 0.90312 0.92525 0.93088 0.89549 0.91000 0.90898 0.94334 0.93238 0.80068 0.94386 0.92634 0.92784 0.92360 0.92701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.41 10.82 113.37 1.23 1.64 16 2 O -0.41 -9.22 10.35 -148.98 -1.54 -10.76 16 3 C 0.09 1.88 2.61 30.60 0.08 1.96 16 4 C -0.11 -2.01 5.57 30.60 0.17 -1.84 16 5 C -0.10 -1.77 5.20 30.59 0.16 -1.61 16 6 C -0.06 -1.47 1.84 -10.80 -0.02 -1.49 16 7 C -0.13 -3.05 5.17 29.85 0.15 -2.89 16 8 C 0.51 16.06 7.51 87.66 0.66 16.72 16 9 O -0.58 -22.41 13.63 -3.04 -0.04 -22.45 16 10 N -0.71 -22.24 4.91 -442.54 -2.17 -24.41 16 11 C 0.15 5.01 1.98 44.99 0.09 5.10 16 12 H 0.05 1.94 7.58 -2.39 -0.02 1.92 16 13 C -0.11 -3.01 5.49 30.60 0.17 -2.84 16 14 C -0.11 -2.65 5.92 30.60 0.18 -2.47 16 15 C -0.11 -2.72 5.92 30.59 0.18 -2.53 16 16 C -0.13 -4.40 5.50 30.59 0.17 -4.23 16 17 C 0.17 6.35 2.29 44.99 0.10 6.45 16 18 H 0.06 2.06 8.08 -2.39 -0.02 2.04 16 19 N -0.73 -34.94 4.95 -322.95 -1.60 -36.54 16 20 C -0.23 -11.92 9.93 84.03 0.83 -11.09 16 21 H 0.08 3.91 7.83 -2.91 -0.02 3.89 16 22 C -0.07 -4.11 5.50 84.86 0.47 -3.64 16 23 N -0.97 -58.31 13.06 21.65 0.28 -58.03 16 24 Si 0.97 44.90 29.55 68.60 2.03 46.93 16 25 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 26 H -0.30 -14.34 7.11 99.48 0.71 -13.63 16 27 H -0.30 -13.74 7.11 99.48 0.71 -13.03 16 28 C -0.12 -3.18 4.94 30.58 0.15 -3.03 16 29 C -0.13 -3.28 5.54 30.58 0.17 -3.11 16 30 H 0.05 0.74 8.08 -2.39 -0.02 0.72 16 31 H 0.04 0.67 7.87 -2.39 -0.02 0.65 16 32 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.07 1.31 7.79 -2.39 -0.02 1.29 16 34 H 0.06 1.26 8.14 -2.39 -0.02 1.25 16 35 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.07 1.70 7.96 -2.38 -0.02 1.68 16 39 H 0.12 2.03 8.14 -2.39 -0.02 2.01 16 40 H 0.10 2.26 8.14 -2.39 -0.02 2.24 16 41 H 0.41 11.82 8.60 -92.71 -0.80 11.03 16 42 H 0.08 1.83 8.14 -2.38 -0.02 1.81 16 43 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 44 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 45 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 46 H 0.07 1.59 8.14 -2.38 -0.02 1.57 16 47 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 48 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 49 H 0.05 1.82 8.14 -2.38 -0.02 1.80 16 50 H 0.37 19.93 7.80 -92.71 -0.72 19.21 16 51 H 0.25 14.57 8.31 -92.71 -0.77 13.80 16 52 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 53 H 0.05 1.88 5.95 -2.39 -0.01 1.87 16 54 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 55 H 0.05 1.38 7.87 -2.39 -0.02 1.37 16 Total: -1.00 -67.21 421.64 1.23 -65.98 By element: Atomic # 1 Polarization: 48.83 SS G_CDS: -0.67 Total: 48.16 kcal Atomic # 6 Polarization: -13.84 SS G_CDS: 4.94 Total: -8.90 kcal Atomic # 7 Polarization: -115.48 SS G_CDS: -3.49 Total: -118.97 kcal Atomic # 8 Polarization: -31.62 SS G_CDS: -1.58 Total: -33.21 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.93 kcal Total: -67.21 1.23 -65.98 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085440899.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.477 kcal (2) G-P(sol) polarization free energy of solvation -67.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds