Wall clock time and date at job start Tue Mar 31 2020 22:56:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42899 * 113.99629 * 2 1 4 4 H 1.08999 * 109.47444 * 29.99805 * 3 2 1 5 5 C 1.50700 * 109.47377 * 270.00006 * 3 2 1 6 6 O 1.21287 * 119.99933 * 354.99978 * 5 3 2 7 7 N 1.34776 * 120.00542 * 175.00114 * 5 3 2 8 8 C 1.45340 * 120.35160 * 359.72460 * 7 5 3 9 9 C 1.53047 * 108.62832 * 223.25239 * 8 7 5 10 10 C 1.52883 * 109.24354 * 77.97423 * 9 8 7 11 11 C 1.53972 * 109.71655 * 287.12417 * 10 9 8 12 12 C 1.52440 * 110.73177 * 315.64886 * 11 10 9 13 13 C 1.53801 * 109.42414 * 113.72874 * 12 11 10 14 14 H 1.09002 * 109.57367 * 42.06598 * 13 12 11 15 15 N 1.46499 * 109.52375 * 162.22008 * 13 12 11 16 16 C 1.36934 * 120.00044 * 274.68384 * 15 13 12 17 17 H 1.07994 * 119.99988 * 0.02562 * 16 15 13 18 18 C 1.38816 * 120.00066 * 179.97438 * 16 15 13 19 19 N 1.31610 * 120.00180 * 180.02562 * 18 16 15 20 20 Si 1.86805 * 119.99953 * 0.02562 * 18 16 15 21 21 H 1.48494 * 109.47186 * 89.99482 * 20 18 16 22 22 H 1.48501 * 109.47170 * 210.00084 * 20 18 16 23 23 H 1.48503 * 109.47014 * 329.99473 * 20 18 16 24 24 C 1.46955 * 120.35585 * 179.97438 * 7 5 3 25 25 C 1.53006 * 109.47213 * 150.00082 * 3 2 1 26 26 C 1.54263 * 110.03037 * 57.16459 * 25 3 2 27 27 C 1.54885 * 104.19714 * 217.10813 * 26 25 3 28 28 C 1.54889 * 102.75047 * 37.94028 * 27 26 25 29 29 C 1.53875 * 110.02904 * 300.00105 * 25 3 2 30 30 H 1.09002 * 109.47382 * 59.99956 * 1 2 3 31 31 H 1.09001 * 109.46938 * 299.99942 * 1 2 3 32 32 H 1.09004 * 109.46926 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.67451 * 343.07650 * 8 7 5 34 34 H 1.08998 * 109.67329 * 103.61333 * 8 7 5 35 35 H 1.09004 * 109.55402 * 318.05437 * 9 8 7 36 36 H 1.09000 * 109.58130 * 197.91255 * 9 8 7 37 37 H 1.08992 * 109.43070 * 167.05003 * 10 9 8 38 38 H 1.09004 * 109.43033 * 47.19800 * 10 9 8 39 39 H 1.08997 * 109.22426 * 195.32422 * 11 10 9 40 40 H 1.08999 * 109.18970 * 75.94583 * 11 10 9 41 41 H 1.09004 * 109.48416 * 353.74300 * 12 11 10 42 42 H 1.08998 * 109.47966 * 233.71269 * 12 11 10 43 43 H 0.97003 * 119.99954 * 94.68934 * 15 13 12 44 44 H 0.97004 * 120.00294 * 180.02562 * 19 18 16 45 45 H 1.08998 * 109.53716 * 188.26029 * 24 7 5 46 46 H 1.09000 * 109.53536 * 308.49751 * 24 7 5 47 47 H 1.09003 * 110.01733 * 178.60675 * 25 3 2 48 48 H 1.09008 * 110.48834 * 335.79046 * 26 25 3 49 49 H 1.09003 * 110.48819 * 98.42754 * 26 25 3 50 50 H 1.08997 * 110.75555 * 279.62637 * 27 26 25 51 51 H 1.09001 * 110.75888 * 156.26170 * 27 26 25 52 52 H 1.08992 * 110.49060 * 203.38136 * 28 27 26 53 53 H 1.09010 * 110.48249 * 80.73701 * 28 27 26 54 54 H 1.09005 * 110.02850 * 238.56362 * 29 25 3 55 55 H 1.08998 * 110.03242 * 359.97438 * 29 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 0.5138 5 6 2.2145 1.7645 -1.4208 6 8 1.9791 1.0107 -2.3414 7 7 2.6587 3.0125 -1.6686 8 6 2.9375 3.9242 -0.5716 9 6 2.3784 5.3035 -0.9281 10 6 0.8652 5.3057 -0.7097 11 6 0.1794 4.4844 -1.8168 12 6 0.7685 4.8210 -3.1819 13 6 1.5065 3.5914 -3.7378 14 1 0.9176 2.6944 -3.5458 15 7 1.7020 3.7489 -5.1811 16 6 0.7122 3.3760 -6.0509 17 1 -0.2127 2.9663 -5.6728 18 6 0.8972 3.5257 -7.4185 19 7 -0.0542 3.1679 -8.2544 20 14 2.4968 4.2352 -8.0724 21 1 3.4645 3.1349 -8.3130 22 1 2.2360 4.9525 -9.3463 23 1 3.0615 5.1823 -7.0777 24 6 2.8612 3.4679 -3.0511 25 6 3.3589 1.2634 0.7213 26 6 4.2869 0.2321 0.0467 27 6 5.0608 -0.4102 1.2246 28 6 3.9822 -0.5030 2.3322 29 6 3.1651 0.7960 2.1744 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 2.4612 3.5597 0.3386 34 1 4.0144 3.9965 -0.4191 35 1 2.5951 5.5262 -1.9729 36 1 2.8385 6.0598 -0.2921 37 1 0.4963 6.3309 -0.7375 38 1 0.6384 4.8657 0.2615 39 1 -0.8873 4.7082 -1.8212 40 1 0.3225 3.4226 -1.6161 41 1 1.4688 5.6503 -3.0812 42 1 -0.0332 5.1030 -3.8643 43 1 2.5326 4.1172 -5.5207 44 1 0.0752 3.2721 -9.2101 45 1 3.3570 4.4386 -3.0462 46 1 3.4773 2.7454 -3.5863 47 1 3.8217 2.2501 0.7049 48 1 3.7010 -0.5209 -0.4806 49 1 4.9757 0.7284 -0.6370 50 1 5.8846 0.2300 1.5403 51 1 5.4229 -1.4020 0.9538 52 1 4.4485 -0.5431 3.3165 53 1 3.3471 -1.3747 2.1741 54 1 3.5347 1.5555 2.8634 55 1 2.1102 0.5996 2.3659 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088419013.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:56:35 Heat of formation + Delta-G solvation = -88.088795 kcal Electronic energy + Delta-G solvation = -32914.965457 eV Core-core repulsion = 28951.327955 eV Total energy + Delta-G solvation = -3963.637502 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.99909 -39.88529 -38.49487 -37.62362 -36.83010 -35.11520 -34.07416 -32.10391 -31.64160 -29.56872 -29.20940 -27.63900 -27.34225 -26.40435 -25.04962 -23.88948 -22.36536 -21.64099 -21.05415 -20.56512 -20.39409 -19.54448 -18.29272 -17.83065 -17.35804 -16.87518 -16.69287 -16.35635 -16.13423 -15.99378 -15.55271 -15.28838 -15.07250 -14.99465 -14.73718 -14.69140 -14.20515 -14.11724 -14.00856 -13.71135 -13.66437 -13.26988 -13.08777 -12.80110 -12.71076 -12.49665 -12.35810 -12.14490 -12.07286 -11.92337 -11.91300 -11.86519 -11.81469 -11.72008 -11.62584 -11.57191 -11.44800 -11.40010 -11.30470 -11.13195 -10.96086 -10.18013 -9.55915 -9.28132 -8.05545 -5.39714 1.32414 1.39437 1.45767 1.62542 1.91649 2.45621 2.76065 3.24735 3.38342 3.57285 3.64775 3.73379 3.82938 3.91464 3.96259 4.03755 4.09004 4.12647 4.16830 4.32796 4.38614 4.40612 4.45323 4.48788 4.53429 4.62517 4.65519 4.66920 4.74465 4.76248 4.80237 4.84170 4.85494 4.91165 4.93130 5.02602 5.04041 5.13477 5.15942 5.19580 5.30210 5.35068 5.36779 5.42670 5.44143 5.49438 5.57585 5.58432 5.66559 5.73274 6.02209 6.17865 6.50964 7.03840 7.25905 7.78041 8.00092 9.16838 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.014128 B = 0.003584 C = 0.003390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1981.453181 B = 7811.139788 C = 8256.651276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.371 6.371 3 C 0.085 3.915 4 H 0.109 0.891 5 C 0.482 3.518 6 O -0.576 6.576 7 N -0.593 5.593 8 C 0.094 3.906 9 C -0.149 4.149 10 C -0.107 4.107 11 C -0.115 4.115 12 C -0.129 4.129 13 C 0.167 3.833 14 H 0.022 0.978 15 N -0.747 5.747 16 C -0.227 4.227 17 H 0.040 0.960 18 C -0.068 4.068 19 N -0.988 5.988 20 Si 0.962 3.038 21 H -0.282 1.282 22 H -0.292 1.292 23 H -0.242 1.242 24 C 0.119 3.881 25 C -0.085 4.085 26 C -0.123 4.123 27 C -0.118 4.118 28 C -0.120 4.120 29 C -0.108 4.108 30 H 0.016 0.984 31 H 0.073 0.927 32 H 0.096 0.904 33 H 0.104 0.896 34 H 0.094 0.906 35 H 0.071 0.929 36 H 0.109 0.891 37 H 0.070 0.930 38 H 0.081 0.919 39 H 0.045 0.955 40 H 0.039 0.961 41 H 0.084 0.916 42 H 0.026 0.974 43 H 0.366 0.634 44 H 0.258 0.742 45 H 0.114 0.886 46 H 0.046 0.954 47 H 0.117 0.883 48 H 0.042 0.958 49 H 0.052 0.948 50 H 0.082 0.918 51 H 0.057 0.943 52 H 0.081 0.919 53 H 0.051 0.949 54 H 0.093 0.907 55 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.895 3.316 31.069 33.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.288 6.288 3 C 0.023 3.977 4 H 0.127 0.873 5 C 0.271 3.729 6 O -0.454 6.454 7 N -0.327 5.327 8 C -0.027 4.027 9 C -0.186 4.186 10 C -0.145 4.145 11 C -0.153 4.153 12 C -0.169 4.169 13 C 0.058 3.942 14 H 0.040 0.960 15 N -0.391 5.391 16 C -0.358 4.358 17 H 0.058 0.942 18 C -0.259 4.259 19 N -0.638 5.638 20 Si 0.789 3.211 21 H -0.209 1.209 22 H -0.218 1.218 23 H -0.166 1.166 24 C -0.004 4.004 25 C -0.104 4.104 26 C -0.161 4.161 27 C -0.156 4.156 28 C -0.158 4.158 29 C -0.146 4.146 30 H 0.035 0.965 31 H 0.091 0.909 32 H 0.114 0.886 33 H 0.122 0.878 34 H 0.112 0.888 35 H 0.089 0.911 36 H 0.127 0.873 37 H 0.089 0.911 38 H 0.100 0.900 39 H 0.064 0.936 40 H 0.058 0.942 41 H 0.103 0.897 42 H 0.045 0.955 43 H 0.200 0.800 44 H 0.067 0.933 45 H 0.132 0.868 46 H 0.064 0.936 47 H 0.135 0.865 48 H 0.061 0.939 49 H 0.071 0.929 50 H 0.101 0.899 51 H 0.076 0.924 52 H 0.099 0.901 53 H 0.070 0.930 54 H 0.112 0.888 55 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 10.670 2.646 30.552 32.469 hybrid contribution -0.295 -0.073 -1.993 2.016 sum 10.375 2.574 28.559 30.494 Atomic orbital electron populations 1.22952 0.80139 1.03842 1.00028 1.87960 1.20624 1.26033 1.94208 1.22272 0.98514 0.86513 0.90384 0.87339 1.22042 0.76466 0.81438 0.92996 1.90770 1.51370 1.55245 1.48026 1.47822 1.65445 1.12567 1.06902 1.22111 1.02169 0.89391 0.89027 1.22286 0.95767 0.96874 1.03671 1.21740 0.95159 1.00109 0.97463 1.21636 0.99088 0.99720 0.94864 1.22294 0.99746 0.98938 0.95930 1.20787 0.95764 0.95650 0.81976 0.95964 1.42578 1.17268 1.77079 1.02167 1.18877 0.95593 1.33133 0.88187 0.94210 1.25588 1.01925 1.02569 0.95806 1.69907 1.35688 1.55928 1.02312 0.85306 0.79218 0.78672 0.77941 1.20867 1.21842 1.16641 1.21570 0.96102 1.00710 0.82047 1.22153 0.90929 1.01623 0.95664 1.22331 0.97590 0.98118 0.98062 1.22461 0.98015 1.00420 0.94681 1.22308 0.96860 0.97736 0.98851 1.22121 1.00924 0.97867 0.93663 0.96510 0.90889 0.88554 0.87754 0.88818 0.91089 0.87289 0.91092 0.90042 0.93605 0.94199 0.89733 0.95520 0.80035 0.93304 0.86839 0.93564 0.86510 0.93897 0.92887 0.89927 0.92383 0.90069 0.92994 0.88850 0.91518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.61 10.81 113.37 1.23 1.83 16 2 O -0.37 -9.92 8.34 -129.99 -1.08 -11.01 16 3 C 0.08 1.85 1.22 29.85 0.04 1.88 16 4 H 0.11 1.74 6.87 -2.39 -0.02 1.72 16 5 C 0.48 14.88 4.93 87.66 0.43 15.31 16 6 O -0.58 -25.62 15.25 15.94 0.24 -25.38 16 7 N -0.59 -14.90 1.69 -824.63 -1.39 -16.29 16 8 C 0.09 1.27 4.36 86.61 0.38 1.65 16 9 C -0.15 -1.97 5.45 30.57 0.17 -1.80 16 10 C -0.11 -1.73 5.75 30.88 0.18 -1.56 16 11 C -0.11 -3.13 5.40 30.74 0.17 -2.97 16 12 C -0.13 -4.51 5.09 30.68 0.16 -4.35 16 13 C 0.17 6.96 2.39 45.06 0.11 7.07 16 14 H 0.02 1.14 6.14 -2.39 -0.01 1.12 16 15 N -0.75 -37.65 4.93 -322.62 -1.59 -39.24 16 16 C -0.23 -14.08 10.38 84.03 0.87 -13.21 16 17 H 0.04 2.79 8.06 -2.91 -0.02 2.77 16 18 C -0.07 -4.26 5.50 84.86 0.47 -3.80 16 19 N -0.99 -67.01 13.97 21.65 0.30 -66.71 16 20 Si 0.96 47.54 27.74 68.60 1.90 49.44 16 21 H -0.28 -13.81 7.11 99.48 0.71 -13.10 16 22 H -0.29 -14.38 7.11 99.48 0.71 -13.67 16 23 H -0.24 -10.45 6.52 99.48 0.65 -9.80 16 24 C 0.12 3.82 4.65 86.09 0.40 4.22 16 25 C -0.09 -1.35 2.43 -10.07 -0.02 -1.38 16 26 C -0.12 -2.63 5.67 31.67 0.18 -2.45 16 27 C -0.12 -1.84 6.91 31.88 0.22 -1.62 16 28 C -0.12 -1.60 6.83 31.67 0.22 -1.39 16 29 C -0.11 -1.25 6.22 31.32 0.19 -1.06 16 30 H 0.02 0.47 8.14 -2.39 -0.02 0.45 16 31 H 0.07 1.14 8.08 -2.39 -0.02 1.13 16 32 H 0.10 1.99 8.14 -2.38 -0.02 1.97 16 33 H 0.10 0.95 4.92 -2.39 -0.01 0.94 16 34 H 0.09 0.83 7.80 -2.39 -0.02 0.81 16 35 H 0.07 1.25 3.35 -2.38 -0.01 1.24 16 36 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 37 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.08 0.96 7.85 -2.38 -0.02 0.94 16 39 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 40 H 0.04 1.21 5.38 -2.39 -0.01 1.20 16 41 H 0.08 2.46 5.47 -2.38 -0.01 2.45 16 42 H 0.03 1.12 8.10 -2.39 -0.02 1.10 16 43 H 0.37 17.11 5.66 -92.71 -0.52 16.59 16 44 H 0.26 16.55 8.31 -92.71 -0.77 15.78 16 45 H 0.11 2.82 6.07 -2.39 -0.01 2.80 16 46 H 0.05 1.73 8.09 -2.39 -0.02 1.71 16 47 H 0.12 1.26 5.44 -2.39 -0.01 1.24 16 48 H 0.04 1.25 7.12 -2.38 -0.02 1.24 16 49 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 50 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 51 H 0.06 0.96 8.14 -2.39 -0.02 0.95 16 52 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 53 H 0.05 0.86 8.14 -2.38 -0.02 0.84 16 54 H 0.09 0.59 8.14 -2.38 -0.02 0.57 16 55 H 0.07 0.82 7.42 -2.39 -0.02 0.80 16 Total: -1.00 -87.10 396.32 4.05 -83.06 By element: Atomic # 1 Polarization: 29.42 SS G_CDS: 0.30 Total: 29.71 kcal Atomic # 6 Polarization: -8.96 SS G_CDS: 5.37 Total: -3.59 kcal Atomic # 7 Polarization: -119.56 SS G_CDS: -2.68 Total: -122.24 kcal Atomic # 8 Polarization: -35.54 SS G_CDS: -0.84 Total: -36.38 kcal Atomic # 14 Polarization: 47.54 SS G_CDS: 1.90 Total: 49.44 kcal Total: -87.10 4.05 -83.06 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088419013.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.030 kcal (2) G-P(sol) polarization free energy of solvation -87.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds