Wall clock time and date at job start Tue Mar 31 2020 22:56:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42903 * 113.99921 * 2 1 4 4 H 1.08998 * 109.47099 * 29.99673 * 3 2 1 5 5 C 1.50701 * 109.46870 * 270.00059 * 3 2 1 6 6 O 1.21291 * 120.00112 * 344.20578 * 5 3 2 7 7 N 1.34776 * 119.99923 * 164.20835 * 5 3 2 8 8 C 1.45334 * 120.36704 * 354.95626 * 7 5 3 9 9 C 1.53435 * 108.44364 * 136.65834 * 8 7 5 10 10 C 1.52880 * 109.38295 * 282.26417 * 9 8 7 11 11 C 1.53952 * 109.73453 * 72.90294 * 10 9 8 12 12 C 1.52445 * 110.73330 * 44.36319 * 11 10 9 13 13 C 1.53800 * 109.40051 * 246.27513 * 12 11 10 14 14 H 1.08996 * 109.52565 * 317.93176 * 13 12 11 15 15 N 1.46491 * 109.52603 * 197.80018 * 13 12 11 16 16 C 1.36937 * 119.99960 * 85.00091 * 15 13 12 17 17 H 1.08001 * 120.00157 * 0.02562 * 16 15 13 18 18 C 1.38817 * 120.00057 * 180.02562 * 16 15 13 19 19 N 1.31614 * 120.00181 * 180.02562 * 18 16 15 20 20 Si 1.86798 * 119.99798 * 359.97438 * 18 16 15 21 21 H 1.48498 * 109.47179 * 90.00309 * 20 18 16 22 22 H 1.48505 * 109.47035 * 209.99995 * 20 18 16 23 23 H 1.48503 * 109.47431 * 329.99958 * 20 18 16 24 24 C 1.46984 * 120.38021 * 174.89497 * 7 5 3 25 25 C 1.52997 * 109.47283 * 150.00355 * 3 2 1 26 26 C 1.54264 * 110.03245 * 54.21879 * 25 3 2 27 27 C 1.54962 * 104.16180 * 217.14005 * 26 25 3 28 28 C 1.54880 * 102.77730 * 37.89323 * 27 26 25 29 29 C 1.53876 * 110.02714 * 297.00721 * 25 3 2 30 30 H 1.08992 * 109.47033 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47027 * 300.00424 * 1 2 3 32 32 H 1.08996 * 109.47008 * 60.00050 * 1 2 3 33 33 H 1.09001 * 109.67322 * 16.90517 * 8 7 5 34 34 H 1.09005 * 109.67399 * 256.40713 * 8 7 5 35 35 H 1.09001 * 109.49067 * 42.23840 * 9 8 7 36 36 H 1.09002 * 109.48991 * 162.29106 * 9 8 7 37 37 H 1.09008 * 109.42646 * 192.97942 * 10 9 8 38 38 H 1.08999 * 109.42810 * 312.86745 * 10 9 8 39 39 H 1.08996 * 109.22565 * 164.68838 * 11 10 9 40 40 H 1.09004 * 109.22060 * 284.04804 * 11 10 9 41 41 H 1.08994 * 109.48425 * 6.25620 * 12 11 10 42 42 H 1.08998 * 109.47973 * 126.28209 * 12 11 10 43 43 H 0.96997 * 120.00293 * 265.00141 * 15 13 12 44 44 H 0.96994 * 120.00555 * 179.97438 * 19 18 16 45 45 H 1.09000 * 109.53467 * 171.74864 * 24 7 5 46 46 H 1.09000 * 109.50957 * 51.53770 * 24 7 5 47 47 H 1.08990 * 110.01826 * 175.61994 * 25 3 2 48 48 H 1.08998 * 110.48944 * 335.79448 * 26 25 3 49 49 H 1.09002 * 110.48345 * 98.43323 * 26 25 3 50 50 H 1.09004 * 110.71912 * 279.57374 * 27 26 25 51 51 H 1.09004 * 110.92210 * 156.30544 * 27 26 25 52 52 H 1.09010 * 110.48832 * 203.40885 * 28 27 26 53 53 H 1.08997 * 110.48905 * 80.76226 * 28 27 26 54 54 H 1.09001 * 110.03223 * 238.56595 * 29 25 3 55 55 H 1.08995 * 110.03898 * 0.02562 * 29 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3450 1.9994 0.5138 5 6 2.2146 1.7643 -1.4208 6 8 2.1704 0.9622 -2.3295 7 7 2.4464 3.0661 -1.6818 8 6 2.3929 4.0504 -0.6139 9 6 3.5826 5.0060 -0.7745 10 6 4.8522 4.3263 -0.2615 11 6 5.2968 3.2376 -1.2551 12 6 5.2142 3.7491 -2.6888 13 6 4.1267 2.9697 -3.4474 14 1 4.1917 1.9120 -3.1923 15 7 4.3196 3.1382 -4.8897 16 6 5.1887 2.3228 -5.5642 17 1 5.7316 1.5551 -5.0328 18 6 5.3719 2.4828 -6.9308 19 7 6.2068 1.6987 -7.5792 20 14 4.4323 3.8101 -7.8500 21 1 5.2226 5.0673 -7.8483 22 1 4.2006 3.3731 -9.2502 23 1 3.1268 4.0451 -7.1823 24 6 2.7575 3.5061 -3.0493 25 6 3.3590 1.2633 0.7211 26 6 4.2604 0.1803 0.0932 27 6 5.0202 -0.4268 1.2996 28 6 3.9418 -0.4420 2.4111 29 6 3.1566 0.8682 2.1945 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 2.4533 3.5481 0.3515 34 1 1.4604 4.6112 -0.6781 35 1 3.7059 5.2594 -1.8275 36 1 3.3993 5.9145 -0.2008 37 1 5.6442 5.0682 -0.1583 38 1 4.6531 3.8713 0.7088 39 1 6.3248 2.9495 -1.0355 40 1 4.6498 2.3671 -1.1468 41 1 4.9637 4.8098 -2.6824 42 1 6.1755 3.6056 -3.1819 43 1 3.8318 3.8274 -5.3670 44 1 6.3346 1.8102 -8.5342 45 1 2.7676 4.5954 -3.0883 46 1 2.0025 3.1228 -3.7357 47 1 3.8458 2.2365 0.6591 48 1 3.6555 -0.5812 -0.3990 49 1 4.9597 0.6284 -0.6128 50 1 5.8601 0.2067 1.5847 51 1 5.3596 -1.4384 1.0767 52 1 4.4090 -0.4483 3.3960 53 1 3.2852 -1.3041 2.2939 54 1 3.5462 1.6492 2.8474 55 1 2.0977 0.7060 2.3956 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088419014.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:56:39 Heat of formation + Delta-G solvation = -86.399929 kcal Electronic energy + Delta-G solvation = -33423.452582 eV Core-core repulsion = 29459.888314 eV Total energy + Delta-G solvation = -3963.564268 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.07548 -39.77140 -38.63403 -37.57367 -36.82824 -35.09374 -34.08030 -32.10880 -31.69668 -29.63768 -29.09549 -27.63536 -27.41098 -26.38070 -25.07742 -23.82209 -22.39538 -21.77492 -20.94896 -20.65843 -20.32618 -19.45053 -18.44423 -17.82095 -17.24674 -17.10468 -16.55277 -16.37463 -16.30400 -15.88041 -15.51940 -15.29949 -15.13207 -14.95473 -14.72352 -14.67260 -14.16325 -14.10915 -13.96901 -13.83718 -13.59718 -13.30533 -13.03863 -12.77108 -12.65824 -12.46670 -12.29550 -12.19463 -12.17837 -11.99000 -11.93901 -11.91155 -11.80059 -11.63676 -11.58328 -11.54083 -11.44874 -11.39805 -11.29874 -11.02746 -10.94506 -10.19319 -9.56225 -9.28090 -8.05144 -5.39501 1.32719 1.39099 1.45823 1.57587 1.92486 2.45732 2.75940 3.25292 3.36882 3.58796 3.68107 3.70908 3.82889 3.86313 3.97544 4.05220 4.06215 4.13173 4.17955 4.32301 4.40737 4.43396 4.45018 4.50777 4.54243 4.58009 4.64845 4.65603 4.72199 4.77660 4.81394 4.83680 4.85493 4.91258 4.92467 4.98262 5.10963 5.12496 5.16590 5.20868 5.27770 5.34078 5.36890 5.44776 5.46042 5.53088 5.55995 5.60487 5.68572 5.74162 6.05164 6.18202 6.50128 7.04098 7.24086 7.78118 8.00211 9.17311 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.013489 B = 0.003881 C = 0.003801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2075.204409 B = 7213.673369 C = 7364.891009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.375 6.375 3 C 0.086 3.914 4 H 0.118 0.882 5 C 0.480 3.520 6 O -0.573 6.573 7 N -0.596 5.596 8 C 0.092 3.908 9 C -0.148 4.148 10 C -0.110 4.110 11 C -0.130 4.130 12 C -0.129 4.129 13 C 0.169 3.831 14 H 0.019 0.981 15 N -0.748 5.748 16 C -0.227 4.227 17 H 0.039 0.961 18 C -0.067 4.067 19 N -0.988 5.988 20 Si 0.963 3.037 21 H -0.269 1.269 22 H -0.296 1.296 23 H -0.252 1.252 24 C 0.118 3.882 25 C -0.088 4.088 26 C -0.124 4.124 27 C -0.122 4.122 28 C -0.116 4.116 29 C -0.106 4.106 30 H 0.095 0.905 31 H 0.075 0.925 32 H 0.025 0.975 33 H 0.104 0.896 34 H 0.093 0.907 35 H 0.071 0.929 36 H 0.109 0.891 37 H 0.072 0.928 38 H 0.083 0.917 39 H 0.043 0.957 40 H 0.062 0.938 41 H 0.084 0.916 42 H 0.025 0.975 43 H 0.366 0.634 44 H 0.258 0.742 45 H 0.115 0.885 46 H 0.045 0.955 47 H 0.109 0.891 48 H 0.046 0.954 49 H 0.039 0.961 50 H 0.075 0.925 51 H 0.055 0.945 52 H 0.082 0.918 53 H 0.056 0.944 54 H 0.093 0.907 55 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.939 8.434 28.933 32.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.292 6.292 3 C 0.025 3.975 4 H 0.136 0.864 5 C 0.268 3.732 6 O -0.452 6.452 7 N -0.330 5.330 8 C -0.029 4.029 9 C -0.185 4.185 10 C -0.147 4.147 11 C -0.168 4.168 12 C -0.169 4.169 13 C 0.060 3.940 14 H 0.037 0.963 15 N -0.391 5.391 16 C -0.358 4.358 17 H 0.058 0.942 18 C -0.258 4.258 19 N -0.638 5.638 20 Si 0.790 3.210 21 H -0.195 1.195 22 H -0.223 1.223 23 H -0.177 1.177 24 C -0.005 4.005 25 C -0.107 4.107 26 C -0.162 4.162 27 C -0.159 4.159 28 C -0.154 4.154 29 C -0.143 4.143 30 H 0.113 0.887 31 H 0.094 0.906 32 H 0.044 0.956 33 H 0.122 0.878 34 H 0.111 0.889 35 H 0.089 0.911 36 H 0.127 0.873 37 H 0.090 0.910 38 H 0.102 0.898 39 H 0.062 0.938 40 H 0.080 0.920 41 H 0.102 0.898 42 H 0.044 0.956 43 H 0.200 0.800 44 H 0.067 0.933 45 H 0.133 0.867 46 H 0.063 0.937 47 H 0.127 0.873 48 H 0.065 0.935 49 H 0.058 0.942 50 H 0.094 0.906 51 H 0.074 0.926 52 H 0.101 0.899 53 H 0.075 0.925 54 H 0.111 0.889 55 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -11.740 7.653 28.451 31.716 hybrid contribution -0.046 -0.047 -2.068 2.069 sum -11.786 7.606 26.384 29.881 Atomic orbital electron populations 1.23020 0.79781 1.03970 1.00504 1.88011 1.21065 1.25913 1.94227 1.22280 0.98276 0.86738 0.90226 0.86416 1.22113 0.76158 0.81969 0.92957 1.90761 1.51208 1.54371 1.48818 1.47885 1.68976 1.07126 1.09055 1.22145 1.00160 0.90459 0.90167 1.22336 0.93690 0.99097 1.03391 1.21780 0.97887 0.97173 0.97837 1.21898 1.00498 1.00086 0.94311 1.22285 0.98308 1.00806 0.95457 1.20750 0.94090 0.96796 0.82355 0.96271 1.42581 1.51285 1.40261 1.05011 1.18876 1.15496 1.10022 0.91423 0.94242 1.25578 1.00896 1.02166 0.97121 1.69908 1.41837 1.43335 1.08744 0.85293 0.79406 0.78955 0.77393 1.19511 1.22270 1.17674 1.21571 0.95009 1.00779 0.83191 1.22154 0.91480 1.00861 0.96169 1.22367 0.97742 0.98196 0.97894 1.22486 0.98295 1.00349 0.94804 1.22292 0.96736 0.97934 0.98402 1.22134 1.01437 0.97981 0.92776 0.88690 0.90628 0.95626 0.87799 0.88935 0.91051 0.87282 0.90977 0.89831 0.93806 0.91982 0.89753 0.95604 0.80031 0.93301 0.86749 0.93658 0.87329 0.93542 0.94248 0.90607 0.92580 0.89894 0.92468 0.88870 0.90577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.44 10.81 113.37 1.23 1.67 16 2 O -0.37 -9.69 8.39 -130.43 -1.09 -10.79 16 3 C 0.09 1.89 1.14 29.85 0.03 1.92 16 4 H 0.12 1.60 6.65 -2.39 -0.02 1.58 16 5 C 0.48 14.92 4.93 87.66 0.43 15.35 16 6 O -0.57 -25.57 15.53 15.48 0.24 -25.33 16 7 N -0.60 -15.20 1.69 -823.87 -1.39 -16.59 16 8 C 0.09 1.27 5.44 86.74 0.47 1.74 16 9 C -0.15 -1.97 5.45 30.70 0.17 -1.81 16 10 C -0.11 -1.77 5.30 30.88 0.16 -1.61 16 11 C -0.13 -3.56 5.08 30.73 0.16 -3.40 16 12 C -0.13 -4.52 5.09 30.68 0.16 -4.36 16 13 C 0.17 7.09 2.40 45.05 0.11 7.20 16 14 H 0.02 0.99 6.31 -2.39 -0.02 0.97 16 15 N -0.75 -37.90 4.93 -322.70 -1.59 -39.49 16 16 C -0.23 -14.16 10.36 84.03 0.87 -13.28 16 17 H 0.04 2.78 8.06 -2.91 -0.02 2.76 16 18 C -0.07 -4.19 5.50 84.86 0.47 -3.72 16 19 N -0.99 -67.15 13.97 21.65 0.30 -66.84 16 20 Si 0.96 47.67 27.73 68.60 1.90 49.57 16 21 H -0.27 -12.62 7.11 99.48 0.71 -11.92 16 22 H -0.30 -14.81 7.11 99.48 0.71 -14.11 16 23 H -0.25 -11.28 6.52 99.48 0.65 -10.63 16 24 C 0.12 3.82 4.64 86.07 0.40 4.22 16 25 C -0.09 -1.70 1.86 -10.07 -0.02 -1.72 16 26 C -0.12 -3.41 5.52 31.69 0.17 -3.24 16 27 C -0.12 -2.54 6.91 31.91 0.22 -2.32 16 28 C -0.12 -1.83 6.83 31.67 0.22 -1.61 16 29 C -0.11 -1.38 6.26 31.32 0.20 -1.19 16 30 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.08 0.87 8.09 -2.39 -0.02 0.85 16 32 H 0.02 0.56 8.14 -2.39 -0.02 0.54 16 33 H 0.10 0.98 4.41 -2.39 -0.01 0.97 16 34 H 0.09 0.85 8.14 -2.38 -0.02 0.83 16 35 H 0.07 1.26 3.35 -2.39 -0.01 1.25 16 36 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 37 H 0.07 1.07 8.14 -2.38 -0.02 1.05 16 38 H 0.08 0.97 6.20 -2.39 -0.01 0.96 16 39 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 40 H 0.06 1.85 1.69 -2.39 0.00 1.84 16 41 H 0.08 2.46 5.47 -2.39 -0.01 2.45 16 42 H 0.02 1.10 8.09 -2.39 -0.02 1.08 16 43 H 0.37 17.22 5.66 -92.71 -0.52 16.70 16 44 H 0.26 16.58 8.31 -92.71 -0.77 15.81 16 45 H 0.11 2.87 6.07 -2.39 -0.01 2.85 16 46 H 0.04 1.72 8.04 -2.39 -0.02 1.70 16 47 H 0.11 1.79 3.08 -2.39 -0.01 1.79 16 48 H 0.05 1.60 7.00 -2.39 -0.02 1.59 16 49 H 0.04 1.28 6.40 -2.39 -0.02 1.26 16 50 H 0.08 1.40 8.14 -2.38 -0.02 1.38 16 51 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 52 H 0.08 0.97 8.14 -2.38 -0.02 0.95 16 53 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 54 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 55 H 0.08 0.88 7.51 -2.39 -0.02 0.87 16 Total: -1.00 -87.86 386.45 4.13 -83.73 By element: Atomic # 1 Polarization: 31.58 SS G_CDS: 0.32 Total: 31.90 kcal Atomic # 6 Polarization: -11.61 SS G_CDS: 5.44 Total: -6.16 kcal Atomic # 7 Polarization: -120.24 SS G_CDS: -2.68 Total: -122.92 kcal Atomic # 8 Polarization: -35.26 SS G_CDS: -0.85 Total: -36.11 kcal Atomic # 14 Polarization: 47.67 SS G_CDS: 1.90 Total: 49.57 kcal Total: -87.86 4.13 -83.73 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088419014.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.672 kcal (2) G-P(sol) polarization free energy of solvation -87.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds