Wall clock time and date at job start Tue Mar 31 2020 22:56:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42897 * 113.99835 * 2 1 4 4 H 1.09000 * 109.47367 * 37.97100 * 3 2 1 5 5 C 1.50707 * 109.47260 * 157.97102 * 3 2 1 6 6 O 1.21285 * 119.99452 * 47.93267 * 5 3 2 7 7 N 1.34771 * 120.00152 * 227.93747 * 5 3 2 8 8 C 1.47134 * 120.18621 * 357.74927 * 7 5 3 9 9 C 1.53625 * 107.51575 * 107.88355 * 8 7 5 10 10 C 1.53486 * 108.46452 * 69.77881 * 9 8 7 11 11 C 1.52475 * 109.15237 * 245.78684 * 10 9 8 12 12 C 1.53111 * 109.67102 * 43.92435 * 11 10 9 13 13 C 1.53436 * 109.34692 * 77.03719 * 12 11 10 14 14 H 1.09004 * 109.63253 * 47.55378 * 13 12 11 15 15 N 1.46504 * 109.63378 * 167.94843 * 13 12 11 16 16 C 1.36941 * 119.99717 * 302.47880 * 15 13 12 17 17 H 1.08002 * 120.00005 * 359.73112 * 16 15 13 18 18 C 1.38813 * 119.99676 * 179.71958 * 16 15 13 19 19 N 1.31615 * 120.00266 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99697 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47155 * 60.00943 * 20 18 16 22 22 H 1.48501 * 109.46904 * 180.02562 * 20 18 16 23 23 H 1.48496 * 109.47351 * 300.00627 * 20 18 16 24 24 C 1.46059 * 120.18463 * 177.78114 * 7 5 3 25 25 C 1.52997 * 109.47023 * 277.96854 * 3 2 1 26 26 C 1.54264 * 110.03422 * 289.57890 * 25 3 2 27 27 C 1.54960 * 104.16200 * 217.13448 * 26 25 3 28 28 C 1.54889 * 102.77637 * 37.89092 * 27 26 25 29 29 C 1.53877 * 110.03065 * 172.36268 * 25 3 2 30 30 H 1.08999 * 109.47232 * 303.91329 * 1 2 3 31 31 H 1.09003 * 109.46781 * 63.91178 * 1 2 3 32 32 H 1.08996 * 109.47386 * 183.90844 * 1 2 3 33 33 H 1.09001 * 109.85004 * 348.38542 * 8 7 5 34 34 H 1.08994 * 109.90568 * 227.41399 * 8 7 5 35 35 H 1.09001 * 109.63805 * 310.08705 * 9 8 7 36 36 H 1.08999 * 109.63721 * 189.47049 * 9 8 7 37 37 H 1.09000 * 109.52801 * 125.88420 * 10 9 8 38 38 H 1.09000 * 109.52344 * 5.68503 * 10 9 8 39 39 H 1.09005 * 109.43456 * 283.86661 * 11 10 9 40 40 H 1.08993 * 109.40429 * 163.96828 * 11 10 9 41 41 H 1.09006 * 109.49528 * 317.07617 * 12 11 10 42 42 H 1.09001 * 109.49143 * 196.99910 * 12 11 10 43 43 H 0.96993 * 120.00118 * 122.20632 * 15 13 12 44 44 H 0.96998 * 120.00089 * 180.02562 * 19 18 16 45 45 H 1.09003 * 109.36133 * 172.82739 * 24 7 5 46 46 H 1.08997 * 109.36419 * 53.22741 * 24 7 5 47 47 H 1.08996 * 110.01767 * 50.97703 * 25 3 2 48 48 H 1.08991 * 110.48703 * 335.78689 * 26 25 3 49 49 H 1.09006 * 110.48411 * 98.42842 * 26 25 3 50 50 H 1.09003 * 110.72248 * 279.57669 * 27 26 25 51 51 H 1.09005 * 110.76519 * 156.22382 * 27 26 25 52 52 H 1.09003 * 110.48553 * 203.40397 * 28 27 26 53 53 H 1.08999 * 110.49092 * 80.76188 * 28 27 26 54 54 H 1.09009 * 110.03071 * 238.56929 * 29 25 3 55 55 H 1.08997 * 110.03423 * 359.97438 * 29 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.4179 1.9669 0.6323 5 6 3.4178 1.2287 0.5329 6 8 4.1801 0.3843 0.1125 7 7 3.8294 2.0983 1.4767 8 6 2.9240 3.1553 1.9540 9 6 2.4857 2.7805 3.3779 10 6 3.6936 2.9284 4.3132 11 6 4.0840 1.5547 4.8472 12 6 4.0602 0.5327 3.7073 13 6 5.3175 0.7042 2.8446 14 1 6.1964 0.7656 3.4864 15 7 5.4504 -0.4372 1.9359 16 6 5.5180 -1.7089 2.4394 17 1 5.4777 -1.8701 3.5065 18 6 5.6380 -2.7909 1.5780 19 7 5.6874 -2.5945 0.2776 20 14 5.7295 -4.5257 2.2648 21 1 4.4956 -4.8178 3.0377 22 1 5.8546 -5.4947 1.1465 23 1 6.9115 -4.6436 3.1560 24 6 5.1770 1.9972 2.0309 25 6 2.0349 1.8527 -1.4286 26 6 3.0721 1.0825 -2.2716 27 6 3.6928 2.1649 -3.1906 28 6 3.7723 3.4002 -2.2596 29 6 2.4795 3.3258 -1.4211 30 1 -0.3633 0.5734 0.8528 31 1 -0.3633 0.4519 -0.9230 32 1 -0.3634 -1.0252 0.0700 33 1 2.0522 3.2178 1.3028 34 1 3.4453 4.1124 1.9673 35 1 2.1346 1.7487 3.3934 36 1 1.6870 3.4473 3.7028 37 1 3.4321 3.5819 5.1455 38 1 4.5309 3.3564 3.7619 39 1 3.3778 1.2520 5.6205 40 1 5.0872 1.6024 5.2707 41 1 3.1736 0.6928 3.0937 42 1 4.0387 -0.4749 4.1225 43 1 5.4865 -0.2925 0.9775 44 1 5.7709 -3.3506 -0.3243 45 1 5.3669 2.8536 2.6779 46 1 5.9028 1.9931 1.2178 47 1 1.0467 1.7633 -1.8795 48 1 3.8358 0.6439 -1.6294 49 1 2.5832 0.3108 -2.8662 50 1 3.0440 2.3650 -4.0434 51 1 4.6873 1.8664 -3.5222 52 1 3.7945 4.3189 -2.8458 53 1 4.6491 3.3365 -1.6152 54 1 1.7073 3.9512 -1.8692 55 1 2.6772 3.6510 -0.3997 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088419015.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:56:44 Heat of formation + Delta-G solvation = -48.616274 kcal Electronic energy + Delta-G solvation = -34150.907599 eV Core-core repulsion = 30188.981754 eV Total energy + Delta-G solvation = -3961.925845 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.99029 -39.87291 -38.09487 -37.81538 -36.42281 -34.90458 -33.70591 -31.63017 -31.02832 -29.51732 -28.81481 -27.84538 -27.56062 -25.97078 -25.08845 -24.06590 -22.27241 -21.59049 -21.24576 -20.49500 -19.43692 -18.91297 -18.11758 -17.95811 -17.41172 -16.70341 -16.42514 -16.34442 -16.12227 -15.88016 -15.60802 -15.17569 -14.94541 -14.92097 -14.62607 -14.41454 -14.17949 -13.89991 -13.77865 -13.29034 -13.23019 -13.08710 -12.86262 -12.75192 -12.64897 -12.54493 -12.32103 -12.22964 -12.10385 -11.95525 -11.87975 -11.82798 -11.79519 -11.71649 -11.51382 -11.30867 -11.29979 -11.11684 -10.89811 -10.72041 -10.51910 -9.96126 -9.25613 -8.68500 -7.71990 -4.97081 1.39525 1.44006 1.49700 1.71825 2.16283 2.62562 3.08355 3.53225 3.60280 3.65773 3.68637 3.87479 3.90259 3.93344 4.06512 4.15971 4.22479 4.29929 4.34592 4.37050 4.44128 4.49094 4.54066 4.59014 4.62285 4.70471 4.72992 4.74974 4.75417 4.81640 4.84028 4.86238 4.88828 4.96736 5.05901 5.06302 5.09880 5.15167 5.19726 5.25510 5.28071 5.40213 5.46411 5.47762 5.53510 5.58132 5.62156 5.70957 5.76515 5.90774 6.21989 6.44820 6.67027 7.44613 7.67271 8.49310 8.88160 9.48697 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.009367 B = 0.005849 C = 0.004513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2988.342034 B = 4785.634565 C = 6202.195417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.401 6.401 3 C 0.082 3.918 4 H 0.105 0.895 5 C 0.500 3.500 6 O -0.501 6.501 7 N -0.601 5.601 8 C 0.093 3.907 9 C -0.146 4.146 10 C -0.119 4.119 11 C -0.112 4.112 12 C -0.130 4.130 13 C 0.150 3.850 14 H 0.021 0.979 15 N -0.732 5.732 16 C -0.228 4.228 17 H 0.057 0.943 18 C -0.079 4.079 19 N -0.950 5.950 20 Si 0.957 3.043 21 H -0.287 1.287 22 H -0.298 1.298 23 H -0.279 1.279 24 C 0.121 3.879 25 C -0.101 4.101 26 C -0.153 4.153 27 C -0.120 4.120 28 C -0.117 4.117 29 C -0.117 4.117 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.083 0.917 33 H 0.100 0.900 34 H 0.109 0.891 35 H 0.053 0.947 36 H 0.101 0.899 37 H 0.083 0.917 38 H 0.076 0.924 39 H 0.057 0.943 40 H 0.057 0.943 41 H 0.067 0.933 42 H 0.014 0.986 43 H 0.395 0.605 44 H 0.238 0.762 45 H 0.129 0.871 46 H 0.038 0.962 47 H 0.094 0.906 48 H 0.075 0.925 49 H 0.039 0.961 50 H 0.078 0.922 51 H 0.045 0.955 52 H 0.087 0.913 53 H 0.044 0.956 54 H 0.097 0.903 55 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.173 22.594 1.628 26.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.320 6.320 3 C 0.022 3.978 4 H 0.123 0.877 5 C 0.288 3.712 6 O -0.374 6.374 7 N -0.336 5.336 8 C -0.028 4.028 9 C -0.184 4.184 10 C -0.156 4.156 11 C -0.150 4.150 12 C -0.169 4.169 13 C 0.041 3.959 14 H 0.038 0.962 15 N -0.387 5.387 16 C -0.361 4.361 17 H 0.075 0.925 18 C -0.272 4.272 19 N -0.601 5.601 20 Si 0.788 3.212 21 H -0.214 1.214 22 H -0.225 1.225 23 H -0.206 1.206 24 C -0.002 4.002 25 C -0.120 4.120 26 C -0.190 4.190 27 C -0.158 4.158 28 C -0.155 4.155 29 C -0.154 4.154 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.101 0.899 33 H 0.118 0.882 34 H 0.127 0.873 35 H 0.071 0.929 36 H 0.119 0.881 37 H 0.101 0.899 38 H 0.094 0.906 39 H 0.075 0.925 40 H 0.075 0.925 41 H 0.086 0.914 42 H 0.033 0.967 43 H 0.241 0.759 44 H 0.047 0.953 45 H 0.146 0.854 46 H 0.057 0.943 47 H 0.113 0.887 48 H 0.093 0.907 49 H 0.058 0.942 50 H 0.097 0.903 51 H 0.064 0.936 52 H 0.106 0.894 53 H 0.063 0.937 54 H 0.116 0.884 55 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -12.640 21.856 1.440 25.289 hybrid contribution 0.250 -2.095 -0.063 2.111 sum -12.390 19.760 1.377 23.364 Atomic orbital electron populations 1.23032 0.79189 1.03500 1.01530 1.88133 1.21655 1.27072 1.95148 1.22327 0.91802 0.85896 0.97801 0.87725 1.20696 0.89748 0.80921 0.79883 1.90450 1.55962 1.34961 1.56070 1.47922 1.14670 1.32037 1.38974 1.22554 0.94132 0.90579 0.95524 1.22475 0.99012 1.02142 0.94808 1.21848 0.98258 0.95783 0.99679 1.21468 1.01124 0.95769 0.96645 1.22344 0.99815 0.97245 0.97518 1.21091 0.94838 0.88156 0.91809 0.96201 1.43707 1.86739 1.00745 1.07480 1.19404 1.39416 0.86123 0.91169 0.92479 1.25426 1.05264 1.00777 0.95684 1.69965 1.59289 1.29033 1.01816 0.85449 0.77726 0.81522 0.76528 1.21358 1.22463 1.20568 1.21772 0.83358 0.98206 0.96818 1.22182 1.00448 0.96225 0.93193 1.22887 0.99677 0.97702 0.98769 1.22464 0.99855 0.95375 0.98067 1.22278 0.97543 0.97989 0.97652 1.22298 0.97954 0.93638 1.01490 0.91949 0.92068 0.89882 0.88183 0.87284 0.92858 0.88097 0.89857 0.90588 0.92463 0.92452 0.91427 0.96704 0.75883 0.95301 0.85374 0.94334 0.88749 0.90668 0.94176 0.90300 0.93589 0.89413 0.93728 0.88430 0.90349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.57 10.81 113.37 1.23 1.79 16 2 O -0.40 -14.89 10.19 -136.58 -1.39 -16.28 16 3 C 0.08 2.45 1.87 29.85 0.06 2.50 16 4 H 0.11 2.24 5.16 -2.39 -0.01 2.23 16 5 C 0.50 18.70 4.95 87.66 0.43 19.13 16 6 O -0.50 -25.70 9.86 9.36 0.09 -25.60 16 7 N -0.60 -17.35 1.70 -819.29 -1.40 -18.75 16 8 C 0.09 1.56 4.52 86.47 0.39 1.95 16 9 C -0.15 -2.47 5.60 30.97 0.17 -2.30 16 10 C -0.12 -2.10 5.48 30.58 0.17 -1.93 16 11 C -0.11 -2.95 5.67 30.46 0.17 -2.78 16 12 C -0.13 -4.97 4.85 30.78 0.15 -4.82 16 13 C 0.15 6.43 2.88 45.28 0.13 6.56 16 14 H 0.02 0.89 7.89 -2.39 -0.02 0.87 16 15 N -0.73 -41.71 4.44 -321.57 -1.43 -43.14 16 16 C -0.23 -14.29 9.18 84.03 0.77 -13.52 16 17 H 0.06 3.49 7.11 -2.91 -0.02 3.47 16 18 C -0.08 -5.13 5.50 84.86 0.47 -4.66 16 19 N -0.95 -65.87 13.06 21.65 0.28 -65.58 16 20 Si 0.96 51.93 29.55 68.60 2.03 53.96 16 21 H -0.29 -15.14 7.11 99.48 0.71 -14.43 16 22 H -0.30 -16.23 7.11 99.48 0.71 -15.52 16 23 H -0.28 -14.44 7.11 99.48 0.71 -13.73 16 24 C 0.12 3.98 4.86 86.60 0.42 4.40 16 25 C -0.10 -2.60 2.87 -10.07 -0.03 -2.63 16 26 C -0.15 -5.29 6.08 31.69 0.19 -5.10 16 27 C -0.12 -3.27 6.91 31.91 0.22 -3.05 16 28 C -0.12 -2.58 6.83 31.67 0.22 -2.36 16 29 C -0.12 -2.14 6.12 31.32 0.19 -1.95 16 30 H 0.06 1.18 8.01 -2.39 -0.02 1.16 16 31 H 0.06 1.18 7.29 -2.39 -0.02 1.16 16 32 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 33 H 0.10 1.32 4.21 -2.39 -0.01 1.31 16 34 H 0.11 1.18 7.97 -2.39 -0.02 1.16 16 35 H 0.05 1.28 5.45 -2.39 -0.01 1.27 16 36 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 38 H 0.08 1.26 4.49 -2.39 -0.01 1.25 16 39 H 0.06 1.43 8.14 -2.38 -0.02 1.41 16 40 H 0.06 1.51 7.85 -2.39 -0.02 1.49 16 41 H 0.07 2.63 3.69 -2.38 -0.01 2.62 16 42 H 0.01 0.67 6.81 -2.39 -0.02 0.65 16 43 H 0.39 24.39 4.21 -122.45 -0.52 23.87 16 44 H 0.24 16.19 8.31 -92.71 -0.77 15.42 16 45 H 0.13 2.98 5.07 -2.39 -0.01 2.97 16 46 H 0.04 1.47 8.05 -2.39 -0.02 1.45 16 47 H 0.09 2.05 7.24 -2.39 -0.02 2.03 16 48 H 0.08 3.46 4.32 -3.19 -0.01 3.45 16 49 H 0.04 1.45 8.14 -2.38 -0.02 1.43 16 50 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 51 H 0.05 1.38 8.14 -2.38 -0.02 1.37 16 52 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 53 H 0.04 1.16 8.14 -2.39 -0.02 1.15 16 54 H 0.10 1.21 8.14 -2.38 -0.02 1.19 16 55 H 0.08 1.26 4.77 -2.39 -0.01 1.25 16 Total: -1.00 -88.87 384.42 3.92 -84.95 By element: Atomic # 1 Polarization: 38.82 SS G_CDS: 0.38 Total: 39.20 kcal Atomic # 6 Polarization: -14.12 SS G_CDS: 5.35 Total: -8.76 kcal Atomic # 7 Polarization: -124.92 SS G_CDS: -2.54 Total: -127.47 kcal Atomic # 8 Polarization: -40.59 SS G_CDS: -1.30 Total: -41.89 kcal Atomic # 14 Polarization: 51.93 SS G_CDS: 2.03 Total: 53.96 kcal Total: -88.87 3.92 -84.95 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088419015.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.337 kcal (2) G-P(sol) polarization free energy of solvation -88.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds