Wall clock time and date at job start Tue Mar 31 2020 22:56:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42898 * 114.00078 * 2 1 4 4 H 1.08991 * 109.47118 * 35.76219 * 3 2 1 5 5 C 1.50701 * 109.46886 * 155.76905 * 3 2 1 6 6 O 1.21278 * 119.99799 * 144.64716 * 5 3 2 7 7 N 1.34772 * 120.00001 * 324.64027 * 5 3 2 8 8 C 1.46965 * 120.36732 * 4.76861 * 7 5 3 9 9 C 1.51800 * 109.40016 * 291.90221 * 8 7 5 10 10 C 1.53806 * 109.05613 * 287.19155 * 9 8 7 11 11 C 1.52443 * 109.40591 * 77.78740 * 10 9 8 12 12 C 1.53949 * 110.73235 * 246.27479 * 11 10 9 13 13 C 1.52879 * 109.73175 * 44.36248 * 12 11 10 14 14 H 1.08995 * 109.48838 * 312.92758 * 13 12 11 15 15 N 1.46502 * 109.50519 * 192.87827 * 13 12 11 16 16 C 1.36933 * 119.99547 * 85.07522 * 15 13 12 17 17 H 1.07995 * 120.00812 * 0.02562 * 16 15 13 18 18 C 1.38819 * 119.99894 * 180.02562 * 16 15 13 19 19 N 1.31623 * 119.99843 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 120.00111 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47244 * 60.00109 * 20 18 16 22 22 H 1.48500 * 109.46926 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.47122 * 300.00084 * 20 18 16 24 24 C 1.45339 * 120.36511 * 185.04552 * 7 5 3 25 25 C 1.53001 * 109.46867 * 275.76691 * 3 2 1 26 26 C 1.54271 * 110.03151 * 293.30989 * 25 3 2 27 27 C 1.54970 * 104.15642 * 217.13789 * 26 25 3 28 28 C 1.54885 * 102.77865 * 37.89019 * 27 26 25 29 29 C 1.53875 * 110.03018 * 176.09233 * 25 3 2 30 30 H 1.09001 * 109.46870 * 185.64332 * 1 2 3 31 31 H 1.08999 * 109.46707 * 305.64373 * 1 2 3 32 32 H 1.09003 * 109.46931 * 65.64318 * 1 2 3 33 33 H 1.08999 * 109.52908 * 51.52360 * 8 7 5 34 34 H 1.08996 * 109.53502 * 171.74862 * 8 7 5 35 35 H 1.08993 * 109.61434 * 167.29058 * 9 8 7 36 36 H 1.09000 * 109.58950 * 47.06788 * 9 8 7 37 37 H 1.09006 * 109.47826 * 317.80969 * 10 9 8 38 38 H 1.08996 * 109.48199 * 197.77089 * 10 9 8 39 39 H 1.09000 * 109.22547 * 125.94826 * 11 10 9 40 40 H 1.08998 * 109.22371 * 6.59465 * 11 10 9 41 41 H 1.09000 * 109.42840 * 284.28391 * 12 11 10 42 42 H 1.08997 * 109.38690 * 164.41895 * 12 11 10 43 43 H 0.97000 * 120.00061 * 265.08852 * 15 13 12 44 44 H 0.97004 * 119.99889 * 179.97438 * 19 18 16 45 45 H 1.09000 * 109.67200 * 256.39201 * 24 7 5 46 46 H 1.09003 * 109.67137 * 16.89152 * 24 7 5 47 47 H 1.08998 * 110.02073 * 54.70075 * 25 3 2 48 48 H 1.09000 * 110.48559 * 335.78301 * 26 25 3 49 49 H 1.08997 * 110.48717 * 98.43004 * 26 25 3 50 50 H 1.08998 * 110.71785 * 279.56728 * 27 26 25 51 51 H 1.09006 * 110.92231 * 156.29399 * 27 26 25 52 52 H 1.09004 * 110.48341 * 203.40450 * 28 27 26 53 53 H 1.08998 * 110.49280 * 80.76006 * 28 27 26 54 54 H 1.09000 * 110.03128 * 238.56592 * 29 25 3 55 55 H 1.08994 * 110.03510 * 359.97438 * 29 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3964 1.9765 0.6005 5 6 3.3983 1.2373 0.5831 6 8 4.2752 1.9521 0.1464 7 7 3.6649 0.3820 1.5900 8 6 2.6382 -0.5608 2.0555 9 6 1.5162 0.2078 2.7299 10 6 2.0074 0.7187 4.0950 11 6 2.8893 1.9450 3.8894 12 6 4.3430 1.6455 4.2982 13 6 4.7633 0.2823 3.7486 14 1 3.9851 -0.4509 3.9606 15 7 6.0152 -0.1364 4.3839 16 6 5.9878 -0.7806 5.5920 17 1 5.0435 -0.9803 6.0763 18 6 7.1741 -1.1769 6.1942 19 7 8.3252 -0.9330 5.6043 20 14 7.1368 -2.0562 7.8419 21 1 6.3615 -3.3162 7.7131 22 1 8.5247 -2.3696 8.2672 23 1 6.4947 -1.1813 8.8555 24 6 4.9690 0.3861 2.2315 25 6 2.0853 1.8302 -1.4352 26 6 3.0836 0.9866 -2.2549 27 6 3.7800 2.0165 -3.1800 28 6 3.9237 3.2574 -2.2643 29 6 2.6188 3.2735 -1.4414 30 1 -0.3633 -1.0227 0.1011 31 1 -0.3633 0.5989 0.8351 32 1 -0.3633 0.4238 -0.9362 33 1 2.2348 -1.1097 1.2045 34 1 3.0803 -1.2601 2.7651 35 1 0.6580 -0.4484 2.8738 36 1 1.2271 1.0542 2.1068 37 1 2.5823 -0.0637 4.5904 38 1 1.1502 0.9867 4.7126 39 1 2.5081 2.7669 4.4955 40 1 2.8641 2.2332 2.8385 41 1 4.4196 1.6374 5.3855 42 1 4.9986 2.4170 3.8944 43 1 6.8635 0.0428 3.9489 44 1 9.1542 -1.2096 6.0254 45 1 5.5530 -0.4650 1.8812 46 1 5.4919 1.3126 1.9941 47 1 1.0989 1.7948 -1.8975 48 1 3.8114 0.5114 -1.5972 49 1 2.5556 0.2380 -2.8454 50 1 3.1549 2.2438 -4.0435 51 1 4.7583 1.6555 -3.4976 52 1 4.0088 4.1649 -2.8622 53 1 4.7872 3.1495 -1.6081 54 1 1.8917 3.9384 -1.9076 55 1 2.8239 3.6002 -0.4220 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088419016.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:56:48 Heat of formation + Delta-G solvation = -74.608684 kcal Electronic energy + Delta-G solvation = -33156.850854 eV Core-core repulsion = 29193.797893 eV Total energy + Delta-G solvation = -3963.052961 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.11411 -39.82920 -38.59267 -37.76618 -36.27107 -34.92534 -33.95163 -31.59706 -31.53334 -29.55162 -28.96514 -27.77227 -27.21131 -26.22662 -25.13824 -23.55630 -22.93553 -21.67287 -21.42656 -20.11753 -19.96617 -19.28848 -18.25729 -17.59766 -17.25740 -17.00013 -16.55095 -16.45202 -16.10578 -15.69354 -15.51793 -15.35116 -15.13396 -14.84290 -14.64240 -14.49337 -14.15434 -14.12023 -13.80247 -13.53711 -13.36564 -13.03344 -12.91196 -12.75749 -12.58059 -12.44023 -12.36897 -12.17697 -12.03816 -11.93620 -11.88776 -11.83416 -11.77619 -11.69897 -11.64257 -11.50685 -11.39662 -11.27172 -11.20569 -10.85096 -10.73626 -10.13858 -9.39577 -8.99260 -7.92866 -5.22517 1.47153 1.50353 1.53554 1.56302 2.06747 2.58285 2.84811 3.40027 3.49541 3.63472 3.68882 3.81055 3.87811 4.03348 4.07412 4.09179 4.16499 4.20309 4.32194 4.36636 4.42299 4.53990 4.59542 4.62048 4.66494 4.67522 4.72657 4.77609 4.78069 4.84781 4.88428 4.91736 4.93597 4.94960 5.02534 5.08202 5.11594 5.12494 5.20497 5.25731 5.29649 5.33836 5.38557 5.41828 5.48134 5.51469 5.54345 5.57464 5.63930 5.77169 6.12611 6.27944 6.55239 7.25845 7.33381 8.07446 8.31404 9.30624 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.016772 B = 0.003370 C = 0.003087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1669.010589 B = 8305.507394 C = 9069.109331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.377 6.377 3 C 0.090 3.910 4 H 0.104 0.896 5 C 0.517 3.483 6 O -0.556 6.556 7 N -0.588 5.588 8 C 0.098 3.902 9 C -0.124 4.124 10 C -0.128 4.128 11 C -0.105 4.105 12 C -0.126 4.126 13 C 0.161 3.839 14 H 0.077 0.923 15 N -0.737 5.737 16 C -0.234 4.234 17 H 0.078 0.922 18 C -0.076 4.076 19 N -0.972 5.972 20 Si 0.972 3.028 21 H -0.275 1.275 22 H -0.299 1.299 23 H -0.279 1.279 24 C 0.120 3.880 25 C -0.096 4.096 26 C -0.108 4.108 27 C -0.119 4.119 28 C -0.119 4.119 29 C -0.105 4.105 30 H 0.103 0.897 31 H 0.059 0.941 32 H 0.052 0.948 33 H 0.115 0.885 34 H 0.067 0.933 35 H 0.100 0.900 36 H 0.072 0.928 37 H 0.056 0.944 38 H 0.076 0.924 39 H 0.058 0.942 40 H 0.052 0.948 41 H 0.041 0.959 42 H 0.032 0.968 43 H 0.369 0.631 44 H 0.250 0.750 45 H 0.045 0.955 46 H 0.063 0.937 47 H 0.104 0.896 48 H 0.037 0.963 49 H 0.071 0.929 50 H 0.080 0.920 51 H 0.051 0.949 52 H 0.064 0.936 53 H 0.049 0.951 54 H 0.076 0.924 55 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.198 4.789 -15.318 28.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.296 6.296 3 C 0.029 3.971 4 H 0.121 0.879 5 C 0.305 3.695 6 O -0.435 6.435 7 N -0.320 5.320 8 C -0.023 4.023 9 C -0.162 4.162 10 C -0.165 4.165 11 C -0.143 4.143 12 C -0.166 4.166 13 C 0.052 3.948 14 H 0.094 0.906 15 N -0.377 5.377 16 C -0.366 4.366 17 H 0.096 0.904 18 C -0.268 4.268 19 N -0.622 5.622 20 Si 0.801 3.199 21 H -0.201 1.201 22 H -0.225 1.225 23 H -0.205 1.205 24 C -0.005 4.005 25 C -0.115 4.115 26 C -0.145 4.145 27 C -0.157 4.157 28 C -0.156 4.156 29 C -0.143 4.143 30 H 0.121 0.879 31 H 0.077 0.923 32 H 0.071 0.929 33 H 0.132 0.868 34 H 0.086 0.914 35 H 0.118 0.882 36 H 0.090 0.910 37 H 0.075 0.925 38 H 0.094 0.906 39 H 0.077 0.923 40 H 0.071 0.929 41 H 0.060 0.940 42 H 0.051 0.949 43 H 0.200 0.800 44 H 0.058 0.942 45 H 0.063 0.937 46 H 0.081 0.919 47 H 0.122 0.878 48 H 0.056 0.944 49 H 0.090 0.910 50 H 0.099 0.901 51 H 0.070 0.930 52 H 0.082 0.918 53 H 0.068 0.932 54 H 0.095 0.905 55 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -22.705 4.884 -15.380 27.855 hybrid contribution 1.322 -0.082 1.118 1.733 sum -21.384 4.802 -14.261 26.148 Atomic orbital electron populations 1.23157 0.79077 1.04483 1.01399 1.88049 1.21871 1.24861 1.94848 1.22305 0.90676 0.87221 0.96887 0.87911 1.20775 0.90460 0.79215 0.79009 1.90698 1.47751 1.44142 1.60936 1.47782 1.13413 1.36795 1.34000 1.22077 0.87931 0.91617 1.00639 1.22105 0.98046 1.00882 0.95126 1.21852 0.99064 0.97341 0.98252 1.21609 0.93760 0.98442 1.00512 1.22255 0.96548 0.98028 0.99776 1.21063 0.89018 0.94925 0.89766 0.90579 1.42567 1.03608 1.69239 1.22277 1.19528 0.92791 1.27822 0.96441 0.90373 1.25564 0.95103 1.03554 1.02610 1.69834 0.97170 1.54158 1.41065 0.85231 0.76033 0.78761 0.79866 1.20052 1.22520 1.20478 1.21391 0.85380 1.00914 0.92805 1.22135 1.00658 0.95260 0.93431 1.22283 0.97291 0.97451 0.97512 1.22449 0.99926 0.95451 0.97834 1.22268 0.98287 0.97639 0.97443 1.22027 0.96823 0.95312 1.00089 0.87855 0.92283 0.92899 0.86774 0.91423 0.88172 0.90987 0.92539 0.90554 0.92288 0.92902 0.94019 0.94896 0.80007 0.94151 0.93691 0.91872 0.87771 0.94374 0.91044 0.90141 0.93046 0.91759 0.93246 0.90501 0.93169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.12 10.10 113.37 1.14 1.27 16 2 O -0.38 -6.11 5.79 -148.98 -0.86 -6.97 16 3 C 0.09 1.73 1.05 29.85 0.03 1.76 16 4 H 0.10 1.64 6.43 -2.39 -0.02 1.63 16 5 C 0.52 14.64 4.58 87.66 0.40 15.05 16 6 O -0.56 -19.29 10.72 -3.02 -0.03 -19.32 16 7 N -0.59 -17.26 1.70 -824.95 -1.40 -18.66 16 8 C 0.10 2.30 4.83 85.90 0.41 2.71 16 9 C -0.12 -2.22 4.07 30.47 0.12 -2.10 16 10 C -0.13 -2.96 5.49 30.68 0.17 -2.80 16 11 C -0.10 -2.94 5.40 30.73 0.17 -2.77 16 12 C -0.13 -4.72 5.33 30.87 0.16 -4.56 16 13 C 0.16 6.43 2.29 45.10 0.10 6.53 16 14 H 0.08 2.93 3.28 -2.39 -0.01 2.92 16 15 N -0.74 -37.95 5.12 -322.42 -1.65 -39.60 16 16 C -0.23 -12.95 9.90 84.04 0.83 -12.12 16 17 H 0.08 4.09 7.83 -2.91 -0.02 4.07 16 18 C -0.08 -4.40 5.50 84.86 0.47 -3.94 16 19 N -0.97 -60.52 13.06 21.65 0.28 -60.24 16 20 Si 0.97 46.24 29.55 68.60 2.03 48.26 16 21 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 22 H -0.30 -14.46 7.11 99.48 0.71 -13.75 16 23 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 24 C 0.12 4.49 5.46 86.75 0.47 4.96 16 25 C -0.10 -1.74 2.86 -10.07 -0.03 -1.77 16 26 C -0.11 -2.35 5.74 31.70 0.18 -2.17 16 27 C -0.12 -2.48 6.91 31.91 0.22 -2.26 16 28 C -0.12 -2.76 6.29 31.67 0.20 -2.56 16 29 C -0.10 -2.11 5.63 31.32 0.18 -1.94 16 30 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.06 0.38 6.85 -2.39 -0.02 0.37 16 32 H 0.05 0.36 7.52 -2.39 -0.02 0.34 16 33 H 0.11 2.38 5.53 -2.39 -0.01 2.36 16 34 H 0.07 1.82 6.06 -2.39 -0.01 1.81 16 35 H 0.10 1.25 8.14 -2.39 -0.02 1.24 16 36 H 0.07 1.16 3.57 -2.39 -0.01 1.16 16 37 H 0.06 1.60 5.47 -2.38 -0.01 1.58 16 38 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 39 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 40 H 0.05 1.48 5.38 -2.39 -0.01 1.47 16 41 H 0.04 1.73 8.11 -2.39 -0.02 1.71 16 42 H 0.03 1.32 7.87 -2.39 -0.02 1.30 16 43 H 0.37 20.85 7.80 -92.71 -0.72 20.13 16 44 H 0.25 15.16 8.31 -92.71 -0.77 14.39 16 45 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 46 H 0.06 2.61 6.85 -2.39 -0.02 2.59 16 47 H 0.10 1.35 7.48 -2.39 -0.02 1.33 16 48 H 0.04 1.09 6.05 -2.39 -0.01 1.08 16 49 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 50 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 51 H 0.05 1.15 8.14 -2.38 -0.02 1.13 16 52 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 53 H 0.05 1.50 6.51 -2.39 -0.02 1.48 16 54 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 55 H 0.05 1.20 6.66 -2.39 -0.02 1.19 16 Total: -1.00 -68.83 383.70 3.78 -65.05 By element: Atomic # 1 Polarization: 37.99 SS G_CDS: 0.17 Total: 38.16 kcal Atomic # 6 Polarization: -11.94 SS G_CDS: 5.24 Total: -6.69 kcal Atomic # 7 Polarization: -115.73 SS G_CDS: -2.77 Total: -118.49 kcal Atomic # 8 Polarization: -25.39 SS G_CDS: -0.89 Total: -26.29 kcal Atomic # 14 Polarization: 46.24 SS G_CDS: 2.03 Total: 48.26 kcal Total: -68.83 3.78 -65.05 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088419016.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.554 kcal (2) G-P(sol) polarization free energy of solvation -68.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds