Wall clock time and date at job start Tue Mar 31 2020 22:50:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42902 * 113.99774 * 2 1 4 4 C 1.50699 * 109.47582 * 179.97438 * 3 2 1 5 5 O 1.21283 * 119.99440 * 359.97438 * 4 3 2 6 6 N 1.34770 * 120.00421 * 179.97438 * 4 3 2 7 7 C 1.46922 * 120.62979 * 0.02683 * 6 4 3 8 8 C 1.53196 * 108.77465 * 233.57971 * 7 6 4 9 9 C 1.53035 * 109.31340 * 305.36454 * 8 7 6 10 10 C 1.53042 * 109.53579 * 61.36605 * 9 8 7 11 11 H 1.08998 * 109.52471 * 58.60445 * 10 9 8 12 12 C 1.53008 * 109.49399 * 178.68049 * 10 9 8 13 13 C 1.53002 * 109.46679 * 184.83386 * 12 10 9 14 14 H 1.08994 * 109.47420 * 305.00073 * 13 12 10 15 15 N 1.46506 * 109.47006 * 65.00592 * 13 12 10 16 16 C 1.36929 * 119.99807 * 204.99521 * 15 13 12 17 17 H 1.08004 * 120.00341 * 0.27647 * 16 15 13 18 18 C 1.38815 * 120.00031 * 179.97438 * 16 15 13 19 19 N 1.31617 * 119.99916 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99958 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47093 * 60.00562 * 20 18 16 22 22 H 1.48495 * 109.47002 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47239 * 300.00281 * 20 18 16 24 24 C 1.53007 * 109.46926 * 184.99945 * 13 12 10 25 25 C 1.54265 * 110.03043 * 297.17195 * 24 13 12 26 26 C 1.54897 * 104.19287 * 217.10378 * 25 24 13 27 27 C 1.54890 * 102.74882 * 37.94268 * 26 25 24 28 28 C 1.53870 * 110.03135 * 180.02562 * 24 13 12 29 29 C 1.46927 * 120.63364 * 179.97438 * 6 4 3 30 30 H 1.09002 * 109.46893 * 60.00822 * 1 2 3 31 31 H 1.09004 * 109.46511 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.47390 * 300.00311 * 1 2 3 33 33 H 1.09000 * 109.47385 * 59.99386 * 3 2 1 34 34 H 1.09004 * 109.46826 * 299.99686 * 3 2 1 35 35 H 1.08994 * 109.58954 * 353.37139 * 7 6 4 36 36 H 1.09003 * 109.58815 * 113.79514 * 7 6 4 37 37 H 1.08999 * 109.49388 * 65.31925 * 8 7 6 38 38 H 1.08998 * 109.49922 * 185.37821 * 8 7 6 39 39 H 1.08991 * 109.46093 * 301.34346 * 9 8 7 40 40 H 1.09002 * 109.45961 * 181.38326 * 9 8 7 41 41 H 1.09000 * 109.47005 * 64.84123 * 12 10 9 42 42 H 1.09002 * 109.47114 * 304.83498 * 12 10 9 43 43 H 0.96999 * 120.00076 * 24.99584 * 15 13 12 44 44 H 0.97000 * 120.00284 * 179.97438 * 19 18 16 45 45 H 1.08999 * 110.01139 * 58.61238 * 24 13 12 46 46 H 1.08995 * 110.48700 * 335.77988 * 25 24 13 47 47 H 1.09007 * 110.48877 * 98.43007 * 25 24 13 48 48 H 1.08997 * 110.75362 * 279.62965 * 26 25 24 49 49 H 1.08993 * 110.75348 * 156.25957 * 26 25 24 50 50 H 1.08996 * 110.48417 * 203.38382 * 27 26 25 51 51 H 1.08994 * 110.48258 * 80.73306 * 27 26 25 52 52 H 1.08991 * 110.03252 * 238.56873 * 28 24 13 53 53 H 1.09003 * 110.03195 * 0.02562 * 28 24 13 54 54 H 1.09006 * 109.58538 * 6.63666 * 29 6 4 55 55 H 1.08997 * 109.59430 * 246.20605 * 29 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5124 1.1867 0.0006 5 8 4.0340 0.0918 0.0015 6 7 4.2763 2.2970 0.0002 7 6 3.6590 3.6303 -0.0003 8 6 4.2333 4.4391 -1.1677 9 6 5.7605 4.4536 -1.0706 10 6 6.2930 3.0220 -1.1666 11 1 5.9738 2.5771 -2.1090 12 6 7.8216 3.0405 -1.1024 13 6 8.3582 1.6241 -1.3191 14 1 7.9010 0.9479 -0.5968 15 7 8.0327 1.1810 -2.6771 16 6 7.9315 -0.1559 -2.9551 17 1 8.0873 -0.8837 -2.1724 18 6 7.6225 -0.5758 -4.2417 19 7 7.4273 0.3111 -5.1943 20 14 7.4838 -2.3997 -4.6209 21 1 6.4160 -3.0000 -3.7815 22 1 7.1479 -2.5828 -6.0557 23 1 8.7780 -3.0662 -4.3270 24 6 9.8767 1.6199 -1.1316 25 6 10.5428 2.5185 -2.1939 26 6 11.8504 1.7719 -2.5572 27 6 11.4138 0.2860 -2.5324 28 6 10.4305 0.2006 -1.3474 29 6 5.7422 2.1973 0.0014 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3632 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.6884 1.8465 0.8899 34 1 1.6885 1.8464 -0.8901 35 1 2.5799 3.5333 -0.1187 36 1 3.8815 4.1363 0.9392 37 1 3.9329 3.9810 -2.1101 38 1 3.8557 5.4606 -1.1232 39 1 6.0596 4.8891 -0.1173 40 1 6.1706 5.0490 -1.8863 41 1 8.1399 3.4040 -0.1254 42 1 8.2099 3.6990 -1.8794 43 1 7.8888 1.8347 -3.3791 44 1 7.2118 0.0178 -6.0934 45 1 10.1301 1.9719 -0.1316 46 1 9.9015 2.6130 -3.0701 47 1 10.7675 3.5002 -1.7766 48 1 12.6226 1.9600 -1.8113 49 1 12.1945 2.0569 -3.5513 50 1 12.2738 -0.3615 -2.3621 51 1 10.9130 0.0201 -3.4633 52 1 10.9533 -0.1363 -0.4524 53 1 9.6174 -0.4851 -1.5861 54 1 6.0376 1.1546 -0.1162 55 1 6.1343 2.5866 0.9409 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098797565.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:50:38 Heat of formation + Delta-G solvation = -103.799318 kcal Electronic energy + Delta-G solvation = -31931.413730 eV Core-core repulsion = 27967.094968 eV Total energy + Delta-G solvation = -3964.318762 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.33627 -39.97446 -38.87312 -38.04819 -36.16068 -34.86392 -33.40061 -32.18611 -30.51858 -29.83973 -29.37405 -27.67930 -27.03503 -25.77731 -25.54723 -23.95711 -22.32651 -21.60546 -20.83173 -20.08199 -19.97231 -19.07442 -18.45933 -17.53977 -17.27949 -16.80741 -16.54156 -16.40676 -15.98766 -15.87136 -15.64544 -15.31418 -15.23302 -15.17527 -14.59425 -14.32920 -14.02833 -13.93435 -13.92218 -13.75594 -13.40732 -13.21064 -13.13680 -12.86916 -12.70982 -12.44343 -12.36134 -12.25060 -12.07964 -11.88493 -11.87705 -11.73838 -11.68717 -11.59161 -11.44345 -11.39793 -11.26950 -10.90405 -10.79968 -10.78627 -10.77071 -10.58247 -9.59747 -8.82518 -7.85821 -5.05401 1.39068 1.42275 1.46378 1.55181 1.80178 2.58819 2.98846 3.48457 3.54830 3.76239 3.90413 3.94547 4.00910 4.03182 4.07678 4.12645 4.14593 4.22295 4.25963 4.39689 4.45817 4.47726 4.55056 4.55568 4.65247 4.71934 4.76790 4.80481 4.83685 4.88375 4.92123 4.93898 4.96907 5.00521 5.04413 5.07923 5.11855 5.20414 5.22488 5.31939 5.36921 5.38107 5.43090 5.51716 5.53556 5.63416 5.68539 5.69316 5.75318 5.95604 6.06044 6.37854 6.43954 7.18626 7.45466 8.24883 8.46601 9.37749 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.009839 B = 0.004097 C = 0.003266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2845.225805 B = 6832.681496 C = 8571.081445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.413 6.413 3 C 0.052 3.948 4 C 0.495 3.505 5 O -0.584 6.584 6 N -0.607 5.607 7 C 0.101 3.899 8 C -0.134 4.134 9 C -0.108 4.108 10 C -0.089 4.089 11 H 0.037 0.963 12 C -0.103 4.103 13 C 0.174 3.826 14 H 0.027 0.973 15 N -0.712 5.712 16 C -0.193 4.193 17 H 0.062 0.938 18 C -0.072 4.072 19 N -0.966 5.966 20 Si 0.938 3.062 21 H -0.297 1.297 22 H -0.296 1.296 23 H -0.280 1.280 24 C -0.101 4.101 25 C -0.103 4.103 26 C -0.114 4.114 27 C -0.115 4.115 28 C -0.124 4.124 29 C 0.123 3.877 30 H 0.057 0.943 31 H 0.091 0.909 32 H 0.067 0.933 33 H 0.119 0.881 34 H 0.101 0.899 35 H 0.106 0.894 36 H 0.100 0.900 37 H 0.043 0.957 38 H 0.109 0.891 39 H 0.087 0.913 40 H 0.064 0.936 41 H 0.090 0.910 42 H 0.065 0.935 43 H 0.372 0.628 44 H 0.244 0.756 45 H 0.078 0.922 46 H 0.045 0.955 47 H 0.074 0.926 48 H 0.079 0.921 49 H 0.053 0.947 50 H 0.059 0.941 51 H 0.031 0.969 52 H 0.055 0.945 53 H 0.054 0.946 54 H 0.048 0.952 55 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.996 15.199 14.577 22.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.332 6.332 3 C -0.027 4.027 4 C 0.283 3.717 5 O -0.463 6.463 6 N -0.341 5.341 7 C -0.020 4.020 8 C -0.172 4.172 9 C -0.146 4.146 10 C -0.108 4.108 11 H 0.055 0.945 12 C -0.142 4.142 13 C 0.066 3.934 14 H 0.045 0.955 15 N -0.351 5.351 16 C -0.325 4.325 17 H 0.080 0.920 18 C -0.264 4.264 19 N -0.618 5.618 20 Si 0.770 3.230 21 H -0.224 1.224 22 H -0.222 1.222 23 H -0.207 1.207 24 C -0.122 4.122 25 C -0.141 4.141 26 C -0.152 4.152 27 C -0.152 4.152 28 C -0.162 4.162 29 C 0.001 3.999 30 H 0.076 0.924 31 H 0.109 0.891 32 H 0.086 0.914 33 H 0.136 0.864 34 H 0.119 0.881 35 H 0.124 0.876 36 H 0.118 0.882 37 H 0.062 0.938 38 H 0.127 0.873 39 H 0.106 0.894 40 H 0.083 0.917 41 H 0.109 0.891 42 H 0.084 0.916 43 H 0.204 0.796 44 H 0.053 0.947 45 H 0.096 0.904 46 H 0.063 0.937 47 H 0.093 0.907 48 H 0.098 0.902 49 H 0.071 0.929 50 H 0.078 0.922 51 H 0.050 0.950 52 H 0.074 0.926 53 H 0.072 0.928 54 H 0.067 0.933 55 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -7.649 14.266 14.620 21.812 hybrid contribution -0.246 -1.524 -1.329 2.037 sum -7.895 12.741 13.291 20.033 Atomic orbital electron populations 1.23045 0.78146 1.04102 1.01815 1.88001 1.22399 1.27068 1.95766 1.22405 0.88753 0.86602 1.04968 1.21176 0.90667 0.83934 0.75901 1.90741 1.75805 1.28862 1.50884 1.48198 1.06724 1.06735 1.72406 1.22159 0.98760 0.80708 1.00382 1.21935 0.95861 1.01632 0.97735 1.21559 0.95505 0.94317 1.03204 1.21331 0.95736 0.96590 0.97165 0.94458 1.21748 0.93654 0.96139 1.02632 1.20529 0.92540 0.94258 0.86117 0.95534 1.42373 1.83083 1.03083 1.06556 1.19255 1.35074 0.85306 0.92913 0.92027 1.25086 1.05266 0.99265 0.96745 1.69739 1.58287 1.32569 1.01254 0.85710 0.77623 0.83458 0.76173 1.22414 1.22183 1.20680 1.22333 0.96966 0.94514 0.98390 1.22219 0.95664 0.97819 0.98368 1.22410 0.97661 0.94495 1.00622 1.22150 0.97644 0.97312 0.98124 1.22238 0.98565 0.98455 0.96892 1.21608 0.78902 1.00547 0.98885 0.92439 0.89073 0.91406 0.86355 0.88113 0.87631 0.88159 0.93843 0.87299 0.89438 0.91718 0.89122 0.91620 0.79597 0.94735 0.90381 0.93658 0.90735 0.90245 0.92861 0.92208 0.95044 0.92587 0.92784 0.93296 0.89457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.42 11.01 113.37 1.25 1.67 16 2 O -0.41 -12.10 10.24 -129.94 -1.33 -13.43 16 3 C 0.05 1.19 4.76 71.24 0.34 1.53 16 4 C 0.49 16.76 7.77 87.66 0.68 17.44 16 5 O -0.58 -27.86 15.91 16.00 0.25 -27.61 16 6 N -0.61 -16.55 2.97 -818.85 -2.43 -18.98 16 7 C 0.10 1.53 6.34 86.36 0.55 2.08 16 8 C -0.13 -2.23 6.08 30.67 0.19 -2.04 16 9 C -0.11 -2.18 5.17 30.62 0.16 -2.02 16 10 C -0.09 -2.66 2.28 -10.70 -0.02 -2.68 16 11 H 0.04 1.53 7.62 -2.39 -0.02 1.51 16 12 C -0.10 -3.03 3.94 30.60 0.12 -2.91 16 13 C 0.17 6.65 1.97 44.99 0.09 6.74 16 14 H 0.03 1.14 6.41 -2.39 -0.02 1.12 16 15 N -0.71 -34.86 3.55 -322.92 -1.15 -36.00 16 16 C -0.19 -10.95 8.27 84.04 0.69 -10.25 16 17 H 0.06 3.57 6.27 -2.91 -0.02 3.55 16 18 C -0.07 -4.33 5.50 84.86 0.47 -3.86 16 19 N -0.97 -60.75 13.06 21.65 0.28 -60.47 16 20 Si 0.94 50.32 29.55 68.60 2.03 52.35 16 21 H -0.30 -16.22 7.11 99.48 0.71 -15.52 16 22 H -0.30 -15.82 7.11 99.48 0.71 -15.11 16 23 H -0.28 -14.48 7.11 99.48 0.71 -13.77 16 24 C -0.10 -3.43 2.82 -10.07 -0.03 -3.46 16 25 C -0.10 -3.36 5.30 31.67 0.17 -3.19 16 26 C -0.11 -3.62 6.91 31.89 0.22 -3.40 16 27 C -0.11 -4.32 6.83 31.65 0.22 -4.10 16 28 C -0.12 -4.73 5.98 31.30 0.19 -4.54 16 29 C 0.12 3.81 5.33 86.37 0.46 4.27 16 30 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.09 1.49 8.14 -2.38 -0.02 1.47 16 32 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.12 1.64 7.94 -2.39 -0.02 1.62 16 34 H 0.10 1.80 7.69 -2.38 -0.02 1.78 16 35 H 0.11 1.03 5.93 -2.39 -0.01 1.02 16 36 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 38 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 39 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 40 H 0.06 1.33 8.14 -2.39 -0.02 1.32 16 41 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 42 H 0.07 1.94 7.44 -2.39 -0.02 1.92 16 43 H 0.37 19.77 7.39 -92.71 -0.69 19.08 16 44 H 0.24 15.18 8.31 -92.71 -0.77 14.41 16 45 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 46 H 0.04 1.79 6.69 -2.39 -0.02 1.77 16 47 H 0.07 1.97 8.14 -2.38 -0.02 1.95 16 48 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 49 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 50 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 51 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 52 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 53 H 0.05 2.48 4.39 -2.39 -0.01 2.47 16 54 H 0.05 2.05 5.61 -2.38 -0.01 2.04 16 55 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 Total: -1.00 -82.61 412.97 3.56 -79.05 By element: Atomic # 1 Polarization: 33.66 SS G_CDS: 0.17 Total: 33.83 kcal Atomic # 6 Polarization: -14.47 SS G_CDS: 5.73 Total: -8.74 kcal Atomic # 7 Polarization: -112.16 SS G_CDS: -3.30 Total: -115.45 kcal Atomic # 8 Polarization: -39.96 SS G_CDS: -1.08 Total: -41.04 kcal Atomic # 14 Polarization: 50.32 SS G_CDS: 2.03 Total: 52.35 kcal Total: -82.61 3.56 -79.05 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098797565.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.748 kcal (2) G-P(sol) polarization free energy of solvation -82.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds