Wall clock time and date at job start Tue Mar 31 2020 22:50:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42906 * 113.99821 * 2 1 4 4 C 1.50706 * 109.46699 * 179.97438 * 3 2 1 5 5 O 1.21274 * 120.00042 * 359.71986 * 4 3 2 6 6 N 1.34777 * 119.99766 * 179.97438 * 4 3 2 7 7 C 1.46929 * 120.63091 * 359.72591 * 6 4 3 8 8 C 1.52765 * 109.00690 * 233.58011 * 7 6 4 9 9 C 1.53032 * 109.38265 * 305.58660 * 8 7 6 10 10 C 1.53041 * 109.53897 * 61.24115 * 9 8 7 11 11 H 1.09000 * 109.52837 * 58.60129 * 10 9 8 12 12 C 1.52998 * 109.49851 * 178.68604 * 10 9 8 13 13 C 1.53000 * 109.47275 * 184.83742 * 12 10 9 14 14 H 1.09001 * 109.47448 * 54.99830 * 13 12 10 15 15 N 1.46505 * 109.47016 * 294.99845 * 13 12 10 16 16 C 1.36937 * 120.00016 * 155.00160 * 15 13 12 17 17 H 1.07998 * 119.99910 * 359.97438 * 16 15 13 18 18 C 1.38810 * 119.99850 * 179.97438 * 16 15 13 19 19 N 1.31625 * 119.99932 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 119.99918 * 179.97438 * 18 16 15 21 21 H 1.48494 * 109.47123 * 90.00350 * 20 18 16 22 22 H 1.48506 * 109.47050 * 210.00194 * 20 18 16 23 23 H 1.48501 * 109.46962 * 329.99896 * 20 18 16 24 24 C 1.53003 * 109.47242 * 174.99638 * 13 12 10 25 25 C 1.54258 * 110.03479 * 297.90649 * 24 13 12 26 26 C 1.54964 * 104.16529 * 217.13672 * 25 24 13 27 27 C 1.54898 * 102.77411 * 37.88645 * 26 25 24 28 28 C 1.53872 * 110.03102 * 180.68986 * 24 13 12 29 29 C 1.46923 * 120.63281 * 179.97438 * 6 4 3 30 30 H 1.09000 * 109.46841 * 59.99911 * 1 2 3 31 31 H 1.08993 * 109.47448 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47367 * 300.00715 * 1 2 3 33 33 H 1.09000 * 109.47490 * 59.99859 * 3 2 1 34 34 H 1.09001 * 109.47232 * 299.99213 * 3 2 1 35 35 H 1.09004 * 109.58660 * 353.40881 * 7 6 4 36 36 H 1.09001 * 109.59243 * 113.83779 * 7 6 4 37 37 H 1.09001 * 109.56725 * 185.54838 * 8 7 6 38 38 H 1.09006 * 109.38446 * 65.51568 * 8 7 6 39 39 H 1.08995 * 109.46188 * 301.21903 * 9 8 7 40 40 H 1.09004 * 109.44897 * 181.25245 * 9 8 7 41 41 H 1.09004 * 109.46780 * 304.83135 * 12 10 9 42 42 H 1.08998 * 109.47878 * 64.83523 * 12 10 9 43 43 H 0.97001 * 119.99320 * 334.99853 * 15 13 12 44 44 H 0.97005 * 119.99555 * 179.97438 * 19 18 16 45 45 H 1.08999 * 110.01672 * 59.29823 * 24 13 12 46 46 H 1.09006 * 110.48830 * 335.78316 * 25 24 13 47 47 H 1.09002 * 110.48853 * 98.42605 * 25 24 13 48 48 H 1.09001 * 110.71837 * 279.57791 * 26 25 24 49 49 H 1.08999 * 110.76731 * 156.21929 * 26 25 24 50 50 H 1.08996 * 110.48293 * 203.40888 * 27 26 25 51 51 H 1.09002 * 110.59392 * 80.81807 * 27 26 25 52 52 H 1.09002 * 110.03203 * 238.57170 * 28 24 13 53 53 H 1.08998 * 110.03781 * 359.94816 * 28 24 13 54 54 H 1.08998 * 109.58754 * 246.16009 * 29 6 4 55 55 H 1.08998 * 109.58450 * 6.58545 * 29 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 0.0006 5 8 4.0340 0.0916 0.0062 6 7 4.2765 2.2968 0.0002 7 6 3.6593 3.6302 -0.0069 8 6 4.2335 4.4380 -1.1694 9 6 5.7606 4.4525 -1.0724 10 6 6.2931 3.0208 -1.1673 11 1 5.9738 2.5750 -2.1093 12 6 7.8217 3.0392 -1.1032 13 6 8.3583 1.6227 -1.3188 14 1 7.9673 1.2246 -2.2552 15 7 7.9341 0.7656 -0.2089 16 6 7.8290 -0.5876 -0.3903 17 1 8.0585 -1.0230 -1.3517 18 6 7.4276 -1.3997 0.6614 19 7 7.1475 -0.8690 1.8329 20 14 7.2836 -3.2456 0.4138 21 1 8.5812 -3.8912 0.7373 22 1 6.2266 -3.7840 1.3073 23 1 6.9284 -3.5292 -0.9999 24 6 9.8866 1.6600 -1.3792 25 6 10.3475 2.5172 -2.5760 26 6 11.6010 1.7793 -3.1106 27 6 11.2172 0.2879 -2.9447 28 6 10.4396 0.2432 -1.6131 29 6 5.7423 2.1970 0.0014 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.6886 1.8465 0.8900 34 1 1.6887 1.8464 -0.8901 35 1 2.5805 3.5328 -0.1291 36 1 3.8783 4.1393 0.9317 37 1 3.8564 5.4598 -1.1253 38 1 3.9330 3.9797 -2.1117 39 1 6.0599 4.8888 -0.1195 40 1 6.1705 5.0472 -1.8888 41 1 8.2100 3.6971 -1.8807 42 1 8.1401 3.4035 -0.1265 43 1 7.7277 1.1568 0.6544 44 1 6.8667 -1.4365 2.5678 45 1 10.2868 2.0685 -0.4513 46 1 9.5714 2.5535 -3.3406 47 1 10.6075 3.5233 -2.2470 48 1 12.4770 2.0219 -2.5091 49 1 11.7727 2.0196 -4.1598 50 1 12.1118 -0.3318 -2.8851 51 1 10.5822 -0.0385 -3.7684 52 1 11.1088 -0.0356 -0.7991 53 1 9.6192 -0.4711 -1.6828 54 1 6.1344 2.5871 0.9406 55 1 6.0376 1.1543 -0.1152 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098797573.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:50:43 Heat of formation + Delta-G solvation = -94.051314 kcal Electronic energy + Delta-G solvation = -32263.803985 eV Core-core repulsion = 28299.907928 eV Total energy + Delta-G solvation = -3963.896057 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.22392 -39.91751 -38.80249 -37.95054 -36.44594 -34.77637 -33.32326 -31.98508 -30.76410 -29.79353 -29.16620 -27.67345 -27.01766 -25.77578 -25.54648 -23.42393 -22.26037 -21.48161 -21.11270 -20.46234 -19.79744 -18.91285 -18.28539 -17.45077 -17.20836 -16.80892 -16.44962 -16.37285 -16.02568 -15.79947 -15.58224 -15.33855 -15.16160 -15.05336 -14.64440 -14.16403 -14.05679 -13.89402 -13.83064 -13.69435 -13.41584 -13.06755 -12.92823 -12.87789 -12.56054 -12.48435 -12.35240 -12.26190 -12.07518 -11.85139 -11.79389 -11.77483 -11.73925 -11.57943 -11.40796 -11.31779 -11.25396 -11.01926 -10.91977 -10.75845 -10.57983 -10.44532 -9.43013 -8.69482 -7.82633 -5.01869 1.38406 1.44936 1.48022 1.76893 1.93849 2.62192 3.07065 3.55753 3.66010 3.76381 3.85461 3.94679 4.01177 4.04645 4.10340 4.12172 4.18613 4.25861 4.30508 4.42641 4.47762 4.53959 4.55728 4.58875 4.65720 4.72450 4.74574 4.81180 4.82885 4.89380 4.92137 4.93797 5.01263 5.04482 5.11024 5.12892 5.16330 5.20456 5.25752 5.30422 5.35110 5.41597 5.48530 5.56685 5.59276 5.61592 5.74617 5.77788 5.82400 5.89035 6.12874 6.39178 6.65248 7.43278 7.49230 8.24319 8.45527 9.40070 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.009527 B = 0.004648 C = 0.003370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2938.384463 B = 6022.568400 C = 8306.780813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.414 6.414 3 C 0.055 3.945 4 C 0.483 3.517 5 O -0.563 6.563 6 N -0.609 5.609 7 C 0.094 3.906 8 C -0.127 4.127 9 C -0.111 4.111 10 C -0.082 4.082 11 H 0.049 0.951 12 C -0.107 4.107 13 C 0.178 3.822 14 H 0.030 0.970 15 N -0.719 5.719 16 C -0.210 4.210 17 H 0.066 0.934 18 C -0.056 4.056 19 N -0.950 5.950 20 Si 0.940 3.060 21 H -0.287 1.287 22 H -0.310 1.310 23 H -0.281 1.281 24 C -0.099 4.099 25 C -0.110 4.110 26 C -0.116 4.116 27 C -0.123 4.123 28 C -0.125 4.125 29 C 0.095 3.905 30 H 0.064 0.936 31 H 0.090 0.910 32 H 0.060 0.940 33 H 0.104 0.896 34 H 0.110 0.890 35 H 0.105 0.895 36 H 0.075 0.925 37 H 0.107 0.893 38 H 0.061 0.939 39 H 0.065 0.935 40 H 0.083 0.917 41 H 0.096 0.904 42 H 0.057 0.943 43 H 0.374 0.626 44 H 0.239 0.761 45 H 0.047 0.953 46 H 0.068 0.932 47 H 0.077 0.923 48 H 0.066 0.934 49 H 0.079 0.921 50 H 0.061 0.939 51 H 0.058 0.942 52 H 0.031 0.969 53 H 0.058 0.942 54 H 0.035 0.965 55 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.146 18.011 -8.947 21.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.333 6.333 3 C -0.024 4.024 4 C 0.271 3.729 5 O -0.440 6.440 6 N -0.344 5.344 7 C -0.027 4.027 8 C -0.165 4.165 9 C -0.148 4.148 10 C -0.102 4.102 11 H 0.068 0.932 12 C -0.146 4.146 13 C 0.070 3.930 14 H 0.048 0.952 15 N -0.360 5.360 16 C -0.342 4.342 17 H 0.084 0.916 18 C -0.249 4.249 19 N -0.601 5.601 20 Si 0.773 3.227 21 H -0.214 1.214 22 H -0.238 1.238 23 H -0.207 1.207 24 C -0.120 4.120 25 C -0.148 4.148 26 C -0.154 4.154 27 C -0.161 4.161 28 C -0.162 4.162 29 C -0.028 4.028 30 H 0.083 0.917 31 H 0.108 0.892 32 H 0.079 0.921 33 H 0.121 0.879 34 H 0.128 0.872 35 H 0.123 0.877 36 H 0.094 0.906 37 H 0.126 0.874 38 H 0.079 0.921 39 H 0.084 0.916 40 H 0.101 0.899 41 H 0.114 0.886 42 H 0.076 0.924 43 H 0.208 0.792 44 H 0.048 0.952 45 H 0.066 0.934 46 H 0.086 0.914 47 H 0.096 0.904 48 H 0.085 0.915 49 H 0.098 0.902 50 H 0.079 0.921 51 H 0.077 0.923 52 H 0.050 0.950 53 H 0.076 0.924 54 H 0.053 0.947 55 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -6.787 17.079 -9.018 20.472 hybrid contribution -0.240 -1.612 0.936 1.879 sum -7.028 15.468 -8.082 18.814 Atomic orbital electron populations 1.23037 0.78279 1.03990 1.01790 1.88028 1.22326 1.27196 1.95730 1.22374 0.89066 0.86365 1.04575 1.21211 0.90459 0.84336 0.76890 1.90873 1.75440 1.28485 1.49176 1.48267 1.07099 1.06207 1.72807 1.22023 0.98852 0.81674 1.00157 1.21828 0.95525 1.01365 0.97783 1.21593 0.95850 0.94508 1.02871 1.21334 0.95373 0.96440 0.97019 0.93211 1.21820 0.94027 0.96335 1.02392 1.20585 0.91862 0.90368 0.90204 0.95221 1.42800 1.79439 1.03090 1.10686 1.19177 1.35110 0.84781 0.95138 0.91580 1.25060 1.03596 0.99927 0.96345 1.69722 1.54430 1.34006 1.01974 0.85614 0.76290 0.84179 0.76611 1.21423 1.23769 1.20718 1.22295 0.97138 0.94747 0.97827 1.22410 0.97309 0.98453 0.96605 1.22473 0.97732 0.93936 1.01236 1.22379 0.99131 0.97827 0.96742 1.22243 0.99133 0.98437 0.96416 1.22446 0.77926 1.05839 0.96564 0.91721 0.89198 0.92104 0.87859 0.87234 0.87669 0.90634 0.87426 0.92053 0.91596 0.89885 0.88600 0.92443 0.79177 0.95197 0.93431 0.91368 0.90442 0.91540 0.90235 0.92054 0.92334 0.95018 0.92359 0.94690 0.86801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.50 11.01 113.37 1.25 1.75 16 2 O -0.41 -13.90 10.24 -129.94 -1.33 -15.24 16 3 C 0.06 1.53 4.77 71.24 0.34 1.87 16 4 C 0.48 19.57 7.78 87.66 0.68 20.26 16 5 O -0.56 -31.62 15.91 16.03 0.26 -31.37 16 6 N -0.61 -20.77 2.98 -819.65 -2.44 -23.21 16 7 C 0.09 1.92 6.31 86.22 0.54 2.46 16 8 C -0.13 -2.12 6.06 30.53 0.19 -1.93 16 9 C -0.11 -2.27 5.17 30.62 0.16 -2.11 16 10 C -0.08 -2.51 2.34 -10.70 -0.03 -2.54 16 11 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 12 C -0.11 -3.23 4.28 30.59 0.13 -3.10 16 13 C 0.18 6.86 1.76 44.99 0.08 6.94 16 14 H 0.03 1.25 8.07 -2.39 -0.02 1.23 16 15 N -0.72 -35.80 2.74 -322.93 -0.88 -36.69 16 16 C -0.21 -12.06 7.85 84.03 0.66 -11.40 16 17 H 0.07 3.80 6.24 -2.91 -0.02 3.78 16 18 C -0.06 -3.46 5.50 84.86 0.47 -2.99 16 19 N -0.95 -61.71 13.06 21.65 0.28 -61.43 16 20 Si 0.94 52.18 29.55 68.60 2.03 54.20 16 21 H -0.29 -15.24 7.11 99.48 0.71 -14.53 16 22 H -0.31 -17.93 7.11 99.48 0.71 -17.22 16 23 H -0.28 -15.26 7.11 99.48 0.71 -14.56 16 24 C -0.10 -3.42 2.69 -10.07 -0.03 -3.45 16 25 C -0.11 -2.79 5.22 31.69 0.17 -2.63 16 26 C -0.12 -2.78 6.91 31.91 0.22 -2.56 16 27 C -0.12 -3.65 6.83 31.67 0.22 -3.44 16 28 C -0.12 -4.78 5.98 31.32 0.19 -4.59 16 29 C 0.09 3.79 4.26 86.38 0.37 4.16 16 30 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.10 2.15 7.95 -2.39 -0.02 2.13 16 34 H 0.11 2.12 7.68 -2.39 -0.02 2.10 16 35 H 0.11 1.45 5.93 -2.38 -0.01 1.44 16 36 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.06 1.10 8.14 -2.38 -0.02 1.08 16 39 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 40 H 0.08 1.37 8.14 -2.38 -0.02 1.35 16 41 H 0.10 2.26 7.08 -2.38 -0.02 2.24 16 42 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 43 H 0.37 20.17 6.12 -92.71 -0.57 19.60 16 44 H 0.24 15.61 8.31 -92.70 -0.77 14.84 16 45 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 46 H 0.07 1.67 7.74 -2.38 -0.02 1.65 16 47 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 48 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 49 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 50 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 51 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 52 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 53 H 0.06 2.65 4.44 -2.39 -0.01 2.64 16 54 H 0.03 1.47 7.92 -2.39 -0.02 1.45 16 55 H 0.11 5.97 3.90 -2.39 -0.01 5.96 16 Total: -1.00 -83.86 410.31 3.80 -80.06 By element: Atomic # 1 Polarization: 36.70 SS G_CDS: 0.29 Total: 36.99 kcal Atomic # 6 Polarization: -8.93 SS G_CDS: 5.60 Total: -3.33 kcal Atomic # 7 Polarization: -118.29 SS G_CDS: -3.04 Total: -121.33 kcal Atomic # 8 Polarization: -45.53 SS G_CDS: -1.08 Total: -46.60 kcal Atomic # 14 Polarization: 52.18 SS G_CDS: 2.03 Total: 54.20 kcal Total: -83.86 3.80 -80.06 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098797573.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.989 kcal (2) G-P(sol) polarization free energy of solvation -83.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds