Wall clock time and date at job start Tue Mar 31 2020 22:50:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42894 * 114.00137 * 2 1 4 4 C 1.50706 * 109.47263 * 179.97438 * 3 2 1 5 5 O 1.21283 * 119.99503 * 359.97438 * 4 3 2 6 6 N 1.34773 * 120.00081 * 179.72605 * 4 3 2 7 7 C 1.46924 * 120.63180 * 359.97438 * 6 4 3 8 8 C 1.53191 * 108.77693 * 126.37172 * 7 6 4 9 9 C 1.53045 * 109.31061 * 54.63266 * 8 7 6 10 10 C 1.53036 * 109.53995 * 298.63600 * 9 8 7 11 11 H 1.09003 * 109.49961 * 301.41683 * 10 9 8 12 12 C 1.53001 * 109.50031 * 181.34724 * 10 9 8 13 13 C 1.52996 * 109.47291 * 174.99846 * 12 10 9 14 14 H 1.08997 * 109.46788 * 55.00956 * 13 12 10 15 15 N 1.46500 * 109.47377 * 295.00441 * 13 12 10 16 16 C 1.36933 * 120.00125 * 155.00147 * 15 13 12 17 17 H 1.08003 * 119.99764 * 359.97438 * 16 15 13 18 18 C 1.38810 * 120.00133 * 179.97438 * 16 15 13 19 19 N 1.31615 * 120.00129 * 359.97438 * 18 16 15 20 20 Si 1.86805 * 119.99987 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.46914 * 60.00007 * 20 18 16 22 22 H 1.48502 * 109.47036 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.47321 * 300.00165 * 20 18 16 24 24 C 1.53000 * 109.47017 * 174.99925 * 13 12 10 25 25 C 1.54258 * 110.03763 * 297.17175 * 24 13 12 26 26 C 1.54886 * 104.20004 * 217.10278 * 25 24 13 27 27 C 1.54891 * 102.74673 * 37.94018 * 26 25 24 28 28 C 1.53868 * 110.03346 * 180.02562 * 24 13 12 29 29 C 1.46931 * 120.62624 * 179.72207 * 6 4 3 30 30 H 1.08994 * 109.46942 * 59.99884 * 1 2 3 31 31 H 1.08997 * 109.46916 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46459 * 300.00527 * 1 2 3 33 33 H 1.09001 * 109.47678 * 60.00187 * 3 2 1 34 34 H 1.08998 * 109.47532 * 300.00132 * 3 2 1 35 35 H 1.08999 * 109.58559 * 246.15685 * 7 6 4 36 36 H 1.08998 * 109.58764 * 6.58017 * 7 6 4 37 37 H 1.08990 * 109.50136 * 174.58614 * 8 7 6 38 38 H 1.09004 * 109.49678 * 294.65407 * 8 7 6 39 39 H 1.09002 * 109.45861 * 58.66126 * 9 8 7 40 40 H 1.09001 * 109.45861 * 178.61544 * 9 8 7 41 41 H 1.08997 * 109.47280 * 295.00503 * 12 10 9 42 42 H 1.09008 * 109.46306 * 54.99996 * 12 10 9 43 43 H 0.96998 * 119.99682 * 334.99844 * 15 13 12 44 44 H 0.96996 * 120.00118 * 179.97438 * 19 18 16 45 45 H 1.09008 * 110.01460 * 58.61625 * 24 13 12 46 46 H 1.09003 * 110.48284 * 335.78389 * 25 24 13 47 47 H 1.09004 * 110.49101 * 98.42422 * 25 24 13 48 48 H 1.08999 * 110.76096 * 279.62686 * 26 25 24 49 49 H 1.08999 * 110.75891 * 156.25201 * 26 25 24 50 50 H 1.08995 * 110.48896 * 203.37972 * 27 26 25 51 51 H 1.09004 * 110.48502 * 80.73307 * 27 26 25 52 52 H 1.09007 * 110.03646 * 238.57470 * 28 24 13 53 53 H 1.08998 * 110.03362 * 359.95414 * 28 24 13 54 54 H 1.08995 * 109.59030 * 353.41460 * 29 6 4 55 55 H 1.08998 * 109.58220 * 113.84237 * 29 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1864 0.0006 5 8 4.0341 0.0914 0.0015 6 7 4.2766 2.2967 -0.0048 7 6 3.6594 3.6300 -0.0120 8 6 4.2324 4.4448 1.1518 9 6 5.7598 4.4586 1.0564 10 6 6.2921 3.0276 1.1605 11 1 5.9712 2.5878 2.1048 12 6 7.8207 3.0456 1.0987 13 6 8.3571 1.6311 1.3275 14 1 7.9012 0.9492 0.6097 15 7 8.0292 1.1986 2.6883 16 6 7.9276 -0.1361 2.9767 17 1 8.0888 -0.8700 2.2009 18 6 7.6175 -0.5459 4.2662 19 7 7.4215 0.3484 5.2117 20 14 7.4782 -2.3668 4.6595 21 1 8.7726 -3.0357 4.3720 22 1 7.1398 -2.5386 6.0952 23 1 6.4112 -2.9736 3.8238 24 6 9.8758 1.6254 1.1425 25 6 10.2330 2.0106 -0.3079 26 6 11.4528 1.1188 -0.6484 27 6 11.1034 -0.2191 0.0496 28 6 10.4292 0.2077 1.3692 29 6 5.7425 2.1967 0.0018 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3632 0.5139 0.8900 33 1 1.6888 1.8464 0.8900 34 1 1.6887 1.8464 -0.8899 35 1 3.8830 4.1311 -0.9538 36 1 2.5801 3.5337 0.1057 37 1 3.8554 5.4662 1.1012 38 1 3.9305 3.9921 2.0963 39 1 6.0600 4.8893 0.1011 40 1 6.1690 5.0583 1.8694 41 1 8.1406 3.4015 0.1194 42 1 8.2077 3.7103 1.8711 43 1 7.8841 1.8578 3.3849 44 1 7.2044 0.0621 6.1127 45 1 10.3392 2.3234 1.8399 46 1 9.4010 1.7907 -0.9769 47 1 10.5030 3.0650 -0.3672 48 1 12.3683 1.5423 -0.2355 49 1 11.5415 0.9806 -1.7260 50 1 12.0085 -0.7919 0.2512 51 1 10.4120 -0.7991 -0.5617 52 1 11.1618 0.2174 2.1763 53 1 9.6158 -0.4762 1.6119 54 1 6.0372 1.1551 0.1288 55 1 6.1390 2.5787 -0.9388 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098797575.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:50:47 Heat of formation + Delta-G solvation = -108.250091 kcal Electronic energy + Delta-G solvation = -31798.752039 eV Core-core repulsion = 27834.240277 eV Total energy + Delta-G solvation = -3964.511762 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.35030 -39.94127 -38.86789 -38.05797 -36.40862 -34.91044 -33.42180 -32.26317 -30.62229 -29.87808 -29.18673 -27.75925 -27.04630 -25.86224 -25.58248 -23.85478 -22.18981 -21.47802 -20.98550 -20.49585 -20.04330 -19.00921 -18.46392 -17.54113 -17.27984 -16.85242 -16.55659 -16.37835 -15.99560 -15.96127 -15.65811 -15.33039 -15.28719 -15.20954 -14.70880 -14.22724 -14.12119 -14.03404 -13.93037 -13.55838 -13.37884 -13.33298 -13.13768 -12.89472 -12.76273 -12.52748 -12.37878 -12.20037 -12.08142 -11.96393 -11.90825 -11.82988 -11.76755 -11.63098 -11.48191 -11.41393 -11.25708 -11.00151 -10.88860 -10.80194 -10.78313 -10.63271 -9.60731 -8.88392 -7.90696 -5.12523 1.37910 1.41820 1.46166 1.54812 1.79484 2.55693 2.98665 3.42628 3.54408 3.73502 3.82645 3.91453 3.97804 3.99817 4.05921 4.08902 4.13640 4.22120 4.27530 4.37273 4.42361 4.47688 4.52333 4.55692 4.62270 4.69521 4.70870 4.75476 4.83860 4.86656 4.88556 4.90339 4.92894 4.95556 5.01214 5.04118 5.07871 5.18077 5.21008 5.24618 5.33241 5.38721 5.41286 5.46467 5.51346 5.56403 5.60480 5.67098 5.75624 5.84690 6.05967 6.33269 6.43557 7.18125 7.39792 8.19015 8.40430 9.32917 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.008177 B = 0.004268 C = 0.003430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3423.528041 B = 6559.250531 C = 8161.721436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.413 6.413 3 C 0.052 3.948 4 C 0.494 3.506 5 O -0.584 6.584 6 N -0.606 5.606 7 C 0.101 3.899 8 C -0.134 4.134 9 C -0.109 4.109 10 C -0.090 4.090 11 H 0.035 0.965 12 C -0.104 4.104 13 C 0.179 3.821 14 H 0.029 0.971 15 N -0.724 5.724 16 C -0.204 4.204 17 H 0.065 0.935 18 C -0.075 4.075 19 N -0.967 5.967 20 Si 0.946 3.054 21 H -0.278 1.278 22 H -0.293 1.293 23 H -0.294 1.294 24 C -0.100 4.100 25 C -0.110 4.110 26 C -0.116 4.116 27 C -0.124 4.124 28 C -0.126 4.126 29 C 0.124 3.876 30 H 0.068 0.932 31 H 0.091 0.909 32 H 0.057 0.943 33 H 0.101 0.899 34 H 0.120 0.880 35 H 0.101 0.899 36 H 0.106 0.894 37 H 0.110 0.890 38 H 0.042 0.958 39 H 0.088 0.912 40 H 0.064 0.936 41 H 0.094 0.906 42 H 0.060 0.940 43 H 0.371 0.629 44 H 0.246 0.754 45 H 0.049 0.951 46 H 0.066 0.934 47 H 0.080 0.920 48 H 0.068 0.932 49 H 0.079 0.921 50 H 0.062 0.938 51 H 0.055 0.945 52 H 0.032 0.968 53 H 0.055 0.945 54 H 0.047 0.953 55 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.344 14.463 -16.679 23.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.332 6.332 3 C -0.027 4.027 4 C 0.283 3.717 5 O -0.463 6.463 6 N -0.340 5.340 7 C -0.020 4.020 8 C -0.172 4.172 9 C -0.146 4.146 10 C -0.109 4.109 11 H 0.054 0.946 12 C -0.143 4.143 13 C 0.071 3.929 14 H 0.047 0.953 15 N -0.363 5.363 16 C -0.336 4.336 17 H 0.083 0.917 18 C -0.267 4.267 19 N -0.620 5.620 20 Si 0.777 3.223 21 H -0.204 1.204 22 H -0.219 1.219 23 H -0.221 1.221 24 C -0.121 4.121 25 C -0.148 4.148 26 C -0.153 4.153 27 C -0.162 4.162 28 C -0.164 4.164 29 C 0.002 3.998 30 H 0.086 0.914 31 H 0.109 0.891 32 H 0.075 0.925 33 H 0.119 0.881 34 H 0.137 0.863 35 H 0.119 0.881 36 H 0.124 0.876 37 H 0.128 0.872 38 H 0.061 0.939 39 H 0.107 0.893 40 H 0.082 0.918 41 H 0.113 0.887 42 H 0.079 0.921 43 H 0.202 0.798 44 H 0.055 0.945 45 H 0.068 0.932 46 H 0.085 0.915 47 H 0.099 0.901 48 H 0.087 0.913 49 H 0.098 0.902 50 H 0.081 0.919 51 H 0.074 0.926 52 H 0.051 0.949 53 H 0.073 0.927 54 H 0.066 0.934 55 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -7.997 13.531 -16.706 22.937 hybrid contribution -0.137 -1.382 1.555 2.085 sum -8.134 12.149 -15.150 21.054 Atomic orbital electron populations 1.23047 0.78130 1.04106 1.01823 1.88000 1.22410 1.27066 1.95769 1.22404 0.88691 0.86614 1.05002 1.21193 0.90693 0.83924 0.75880 1.90740 1.75821 1.28869 1.50881 1.48197 1.06655 1.06770 1.72410 1.22168 0.98793 0.80645 1.00414 1.21940 0.95777 1.01675 0.97791 1.21565 0.95581 0.94200 1.03256 1.21255 0.95648 0.96728 0.97281 0.94615 1.21771 0.93786 0.96034 1.02684 1.20577 0.92247 0.94370 0.85711 0.95307 1.42506 1.83432 1.03364 1.06967 1.19335 1.35797 0.85298 0.93217 0.91728 1.25223 1.04850 1.00001 0.96640 1.69757 1.57887 1.32804 1.01535 0.85596 0.77770 0.82547 0.76353 1.20436 1.21876 1.22120 1.22311 0.97385 0.95572 0.96852 1.22399 0.97809 0.99949 0.94632 1.22460 0.98063 0.94494 1.00295 1.22377 0.99523 0.98238 0.96037 1.22245 0.99292 0.98176 0.96642 1.21498 0.79004 1.00437 0.98909 0.91377 0.89068 0.92454 0.88122 0.86274 0.88056 0.87564 0.87216 0.93869 0.89307 0.91770 0.88723 0.92080 0.79763 0.94516 0.93243 0.91529 0.90125 0.91311 0.90210 0.91918 0.92611 0.94916 0.92666 0.93392 0.89368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.42 11.01 113.37 1.25 1.67 16 2 O -0.41 -12.09 10.24 -129.94 -1.33 -13.42 16 3 C 0.05 1.19 4.76 71.24 0.34 1.53 16 4 C 0.49 16.80 7.78 87.66 0.68 17.49 16 5 O -0.58 -27.95 15.91 16.00 0.25 -27.69 16 6 N -0.61 -16.62 2.98 -819.65 -2.44 -19.06 16 7 C 0.10 1.53 6.34 86.36 0.55 2.08 16 8 C -0.13 -2.26 6.08 30.67 0.19 -2.07 16 9 C -0.11 -2.22 5.17 30.62 0.16 -2.07 16 10 C -0.09 -2.74 2.27 -10.85 -0.02 -2.76 16 11 H 0.04 1.49 7.62 -2.39 -0.02 1.48 16 12 C -0.10 -3.16 4.11 30.59 0.13 -3.03 16 13 C 0.18 7.07 1.66 44.99 0.07 7.14 16 14 H 0.03 1.27 6.39 -2.39 -0.02 1.25 16 15 N -0.72 -37.01 4.42 -322.95 -1.43 -38.44 16 16 C -0.20 -11.90 8.28 84.03 0.70 -11.20 16 17 H 0.06 3.81 6.26 -2.91 -0.02 3.79 16 18 C -0.08 -4.61 5.50 84.86 0.47 -4.15 16 19 N -0.97 -61.80 13.06 21.65 0.28 -61.52 16 20 Si 0.95 50.62 29.55 68.60 2.03 52.64 16 21 H -0.28 -14.27 7.11 99.48 0.71 -13.56 16 22 H -0.29 -15.52 7.11 99.48 0.71 -14.81 16 23 H -0.29 -15.96 7.11 99.48 0.71 -15.25 16 24 C -0.10 -3.55 2.69 -10.07 -0.03 -3.57 16 25 C -0.11 -2.86 5.23 31.67 0.17 -2.70 16 26 C -0.12 -2.85 6.91 31.88 0.22 -2.63 16 27 C -0.12 -3.84 6.83 31.65 0.22 -3.62 16 28 C -0.13 -4.99 5.98 31.30 0.19 -4.80 16 29 C 0.12 3.88 5.31 86.23 0.46 4.34 16 30 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.10 1.80 7.71 -2.39 -0.02 1.79 16 34 H 0.12 1.63 7.93 -2.39 -0.02 1.61 16 35 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.11 1.03 5.93 -2.39 -0.01 1.02 16 37 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.04 0.97 8.14 -2.38 -0.02 0.95 16 39 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 40 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 41 H 0.09 2.21 7.13 -2.39 -0.02 2.20 16 42 H 0.06 1.88 8.14 -2.38 -0.02 1.86 16 43 H 0.37 20.43 7.80 -92.71 -0.72 19.71 16 44 H 0.25 15.43 8.31 -92.71 -0.77 14.65 16 45 H 0.05 1.83 8.14 -2.38 -0.02 1.82 16 46 H 0.07 1.69 7.77 -2.39 -0.02 1.67 16 47 H 0.08 1.73 8.14 -2.38 -0.02 1.71 16 48 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 49 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 50 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 51 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 52 H 0.03 1.35 8.14 -2.38 -0.02 1.33 16 53 H 0.05 2.61 4.39 -2.39 -0.01 2.60 16 54 H 0.05 2.03 5.61 -2.39 -0.01 2.02 16 55 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 Total: -1.00 -84.64 414.64 3.22 -81.42 By element: Atomic # 1 Polarization: 34.29 SS G_CDS: 0.13 Total: 34.43 kcal Atomic # 6 Polarization: -14.07 SS G_CDS: 5.72 Total: -8.35 kcal Atomic # 7 Polarization: -115.43 SS G_CDS: -3.59 Total: -119.02 kcal Atomic # 8 Polarization: -40.04 SS G_CDS: -1.08 Total: -41.12 kcal Atomic # 14 Polarization: 50.62 SS G_CDS: 2.03 Total: 52.64 kcal Total: -84.64 3.22 -81.42 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098797575.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.829 kcal (2) G-P(sol) polarization free energy of solvation -84.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds