Wall clock time and date at job start Tue Mar 31 2020 22:01:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42899 * 109.46880 * 2 1 4 4 C 1.42899 * 114.00095 * 184.69501 * 3 2 1 5 5 H 1.09002 * 109.47502 * 329.06417 * 4 3 2 6 6 C 1.52996 * 109.47530 * 209.06040 * 4 3 2 7 7 C 1.50693 * 109.47278 * 64.99945 * 6 4 3 8 8 O 1.21282 * 119.99903 * 0.02562 * 7 6 4 9 9 N 1.34783 * 120.00365 * 180.02562 * 7 6 4 10 10 C 1.48673 * 126.63440 * 0.26420 * 9 7 6 11 11 C 1.53744 * 105.68762 * 211.40538 * 10 9 7 12 12 H 1.08999 * 112.28743 * 103.83410 * 11 10 9 13 13 C 1.54455 * 109.01351 * 228.93639 * 11 10 9 14 14 N 1.48338 * 104.32488 * 137.92399 * 13 11 10 15 15 C 1.36934 * 128.19909 * 138.15255 * 14 13 11 16 16 H 1.07998 * 119.99821 * 338.13826 * 15 14 13 17 17 C 1.38812 * 120.00285 * 158.13070 * 15 14 13 18 18 N 1.31621 * 119.99635 * 336.97680 * 17 15 14 19 19 Si 1.86795 * 119.99960 * 156.69260 * 17 15 14 20 20 H 1.48495 * 109.47299 * 90.00660 * 19 17 15 21 21 H 1.48504 * 109.47010 * 210.00227 * 19 17 15 22 22 H 1.48500 * 109.47349 * 329.99988 * 19 17 15 23 23 C 1.48337 * 103.60106 * 318.41504 * 14 13 11 24 24 C 1.54088 * 104.50197 * 41.55242 * 23 14 13 25 25 C 1.53000 * 112.14667 * 97.17178 * 24 23 14 26 26 C 1.47195 * 126.70348 * 180.02562 * 9 7 6 27 27 C 1.53004 * 109.46906 * 89.06050 * 4 3 2 28 28 C 1.53000 * 109.47123 * 64.85602 * 27 4 3 29 29 C 1.53004 * 109.47138 * 184.85862 * 27 4 3 30 30 H 1.09002 * 109.47346 * 60.00683 * 1 2 3 31 31 H 1.08999 * 109.47235 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47586 * 299.99876 * 1 2 3 33 33 H 1.08995 * 109.47389 * 239.99607 * 2 1 3 34 34 H 1.09004 * 109.46612 * 119.99394 * 2 1 3 35 35 H 1.09001 * 109.46952 * 304.99954 * 6 4 3 36 36 H 1.09001 * 109.47245 * 185.00521 * 6 4 3 37 37 H 1.08994 * 110.86303 * 92.17055 * 10 9 7 38 38 H 1.09001 * 109.98344 * 330.17268 * 10 9 7 39 39 H 1.08996 * 110.46241 * 19.20991 * 13 11 10 40 40 H 1.09006 * 110.56562 * 256.68585 * 13 11 10 41 41 H 0.97003 * 120.00104 * 354.06308 * 18 17 15 42 42 H 1.09000 * 110.46049 * 160.29337 * 23 14 13 43 43 H 1.08995 * 110.46306 * 282.87060 * 23 14 13 44 44 H 1.09001 * 109.47603 * 302.40830 * 25 24 23 45 45 H 1.09004 * 109.47626 * 62.40540 * 25 24 23 46 46 H 1.09007 * 109.47419 * 182.40286 * 25 24 23 47 47 H 1.09000 * 110.06157 * 29.38982 * 26 9 7 48 48 H 1.08991 * 110.06353 * 267.87107 * 26 9 7 49 49 H 1.08998 * 109.47230 * 304.85423 * 27 4 3 50 50 H 1.09006 * 109.46813 * 185.74728 * 28 27 4 51 51 H 1.08998 * 109.47298 * 305.74802 * 28 27 4 52 52 H 1.09000 * 109.46855 * 65.75275 * 28 27 4 53 53 H 1.08998 * 109.46867 * 59.99991 * 29 27 4 54 54 H 1.08998 * 109.47094 * 180.02562 * 29 27 4 55 55 H 1.08998 * 109.46702 * 299.99885 * 29 27 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4266 1.4617 -0.1069 5 1 3.8972 0.5980 0.3632 6 6 3.8897 2.7397 0.5953 7 6 3.6085 2.6318 2.0718 8 8 3.0892 1.6310 2.5186 9 7 3.9340 3.6475 2.8959 10 6 4.5667 4.9360 2.5088 11 6 5.4219 5.3579 3.7148 12 1 6.4849 5.1830 3.5492 13 6 5.1168 6.8330 4.0566 14 7 5.0433 6.8589 5.5379 15 6 5.5518 7.7983 6.3946 16 1 6.3595 8.4399 6.0748 17 6 5.0291 7.9260 7.6742 18 7 3.8074 7.5088 7.9307 19 14 6.0624 8.6827 9.0340 20 1 5.8407 10.1507 9.0655 21 1 5.6695 8.0947 10.3398 22 1 7.4984 8.4043 8.7778 23 6 4.2941 5.6229 5.8716 24 6 4.8708 4.5542 4.9233 25 6 5.9487 3.7044 5.5992 26 6 3.7280 3.6992 4.3524 27 6 3.8241 1.5183 -1.5833 28 6 3.2635 2.7947 -2.2138 29 6 5.3496 1.5186 -1.7012 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.8934 -0.5139 -0.8899 34 1 1.8932 -0.5138 0.8901 35 1 3.3528 3.5948 0.1846 36 1 4.9600 2.8732 0.4380 37 1 3.8105 5.6935 2.3033 38 1 5.2001 4.7919 1.6335 39 1 4.1639 7.1355 3.6223 40 1 5.9186 7.4816 3.7034 41 1 3.2416 7.1919 7.2092 42 1 4.4663 5.3418 6.9106 43 1 3.2291 5.7606 5.6847 44 1 6.7473 4.3516 5.9618 45 1 5.5114 3.1625 6.4378 46 1 6.3554 2.9936 4.8798 47 1 3.7678 2.6938 4.7716 48 1 2.7669 4.1611 4.5780 49 1 3.4198 0.6490 -2.1020 50 1 3.4584 2.7860 -3.2862 51 1 2.1886 2.8439 -2.0402 52 1 3.7444 3.6634 -1.7642 53 1 5.7488 0.6092 -1.2520 54 1 5.6327 1.5593 -2.7530 55 1 5.7538 2.3878 -1.1825 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001101267354.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:01:15 Heat of formation + Delta-G solvation = -88.346413 kcal Electronic energy + Delta-G solvation = -31432.339034 eV Core-core repulsion = 27468.690361 eV Total energy + Delta-G solvation = -3963.648674 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.66987 -40.39094 -39.03067 -36.70203 -36.26594 -34.40205 -33.09857 -32.23860 -31.19227 -30.75980 -28.12700 -27.99323 -27.35443 -26.65096 -25.18867 -23.89173 -23.67684 -22.26974 -20.85312 -20.24726 -19.82137 -19.29339 -18.13139 -17.83354 -17.12181 -16.71115 -16.45603 -16.29279 -15.95361 -15.60372 -15.43305 -15.20222 -15.06318 -14.84139 -14.71402 -14.43106 -14.01984 -13.96521 -13.76132 -13.65046 -13.26336 -13.16379 -13.12022 -12.98847 -12.79138 -12.65161 -12.64181 -12.52653 -12.44673 -12.22632 -12.09159 -11.90331 -11.86917 -11.73213 -11.69921 -11.67166 -11.52439 -11.43101 -11.37166 -10.81495 -10.57320 -10.30661 -9.74315 -9.02863 -8.33104 -5.37054 1.57705 1.64512 1.66653 1.82979 1.93016 2.63909 2.77652 3.19801 3.27073 3.38301 3.60612 3.72240 3.81985 3.84238 4.00824 4.08887 4.13596 4.17722 4.19939 4.25735 4.30336 4.33986 4.41889 4.42988 4.49558 4.49838 4.60240 4.65875 4.69457 4.71393 4.83081 4.85113 4.85271 4.89068 4.90898 4.92290 5.00034 5.05040 5.05313 5.07989 5.11372 5.18102 5.23499 5.23581 5.26148 5.33362 5.40923 5.47571 5.49468 5.67836 6.29217 6.36726 6.55465 6.84075 7.15718 7.66946 8.36832 9.02486 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.021239 B = 0.002502 C = 0.002385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.986521 B =11189.440123 C =11737.665647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.060 3.940 3 O -0.393 6.393 4 C 0.109 3.891 5 H 0.053 0.947 6 C -0.129 4.129 7 C 0.527 3.473 8 O -0.580 6.580 9 N -0.618 5.618 10 C 0.113 3.887 11 C -0.095 4.095 12 H 0.105 0.895 13 C 0.127 3.873 14 N -0.623 5.623 15 C -0.329 4.329 16 H 0.064 0.936 17 C -0.083 4.083 18 N -0.952 5.952 19 Si 1.120 2.880 20 H -0.282 1.282 21 H -0.293 1.293 22 H -0.272 1.272 23 C 0.157 3.843 24 C -0.078 4.078 25 C -0.112 4.112 26 C 0.125 3.875 27 C -0.111 4.111 28 C -0.144 4.144 29 C -0.149 4.149 30 H 0.065 0.935 31 H 0.087 0.913 32 H 0.043 0.957 33 H 0.060 0.940 34 H 0.032 0.968 35 H 0.114 0.886 36 H 0.135 0.865 37 H 0.077 0.923 38 H 0.117 0.883 39 H 0.027 0.973 40 H 0.059 0.941 41 H 0.253 0.747 42 H 0.029 0.971 43 H 0.007 0.993 44 H 0.049 0.951 45 H 0.049 0.951 46 H 0.069 0.931 47 H 0.068 0.932 48 H 0.050 0.950 49 H 0.072 0.928 50 H 0.063 0.937 51 H 0.047 0.953 52 H 0.065 0.935 53 H 0.054 0.946 54 H 0.069 0.931 55 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.805 -13.170 -22.862 26.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.016 4.016 3 O -0.312 6.312 4 C 0.051 3.949 5 H 0.071 0.929 6 C -0.168 4.168 7 C 0.318 3.682 8 O -0.459 6.459 9 N -0.351 5.351 10 C -0.009 4.009 11 C -0.116 4.116 12 H 0.123 0.877 13 C 0.002 3.998 14 N -0.348 5.348 15 C -0.457 4.457 16 H 0.082 0.918 17 C -0.278 4.278 18 N -0.595 5.595 19 Si 0.944 3.056 20 H -0.208 1.208 21 H -0.220 1.220 22 H -0.198 1.198 23 C 0.031 3.969 24 C -0.081 4.081 25 C -0.169 4.169 26 C 0.001 3.999 27 C -0.129 4.129 28 C -0.201 4.201 29 C -0.206 4.206 30 H 0.084 0.916 31 H 0.106 0.894 32 H 0.062 0.938 33 H 0.078 0.922 34 H 0.051 0.949 35 H 0.133 0.867 36 H 0.153 0.847 37 H 0.095 0.905 38 H 0.135 0.865 39 H 0.045 0.955 40 H 0.077 0.923 41 H 0.063 0.937 42 H 0.048 0.952 43 H 0.024 0.976 44 H 0.068 0.932 45 H 0.068 0.932 46 H 0.088 0.912 47 H 0.087 0.913 48 H 0.069 0.931 49 H 0.091 0.909 50 H 0.082 0.918 51 H 0.066 0.934 52 H 0.084 0.916 53 H 0.073 0.927 54 H 0.088 0.912 55 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 2.489 -13.134 -20.993 24.888 hybrid contribution -0.559 -0.340 -0.896 1.109 sum 1.930 -13.475 -21.888 25.776 Atomic orbital electron populations 1.21720 0.93355 1.03030 1.02217 1.22472 0.95926 0.83574 0.99652 1.87865 1.21621 1.27132 1.94608 1.21882 0.81603 0.96461 0.94934 0.92915 1.21982 1.05286 1.00962 0.88604 1.20952 0.76949 0.80879 0.89441 1.90665 1.45018 1.31768 1.78485 1.49051 1.61136 1.17496 1.07438 1.22604 0.96223 0.84065 0.97976 1.22970 1.00469 0.94983 0.93147 0.87700 1.22060 0.98444 0.94819 0.84464 1.45388 1.65811 1.21749 1.01813 1.20012 1.13772 1.15055 0.96908 0.91822 1.27233 0.97562 1.01179 1.01817 1.70863 1.06807 1.45943 1.35869 0.82806 0.74143 0.75529 0.73152 1.20825 1.21964 1.19760 1.21579 0.92723 0.86181 0.96443 1.22136 0.95337 0.94653 0.95963 1.21512 0.97223 0.98420 0.99793 1.21845 0.97044 0.99764 0.81246 1.21562 0.97344 0.99900 0.94142 1.21805 1.00829 0.96780 1.00693 1.21900 0.93287 1.02470 1.02952 0.91563 0.89440 0.93763 0.92163 0.94929 0.86746 0.84710 0.90527 0.86526 0.95535 0.92295 0.93722 0.95188 0.97574 0.93175 0.93178 0.91189 0.91331 0.93148 0.90928 0.91836 0.93391 0.91634 0.92672 0.91165 0.91355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.67 10.28 71.98 0.74 -1.93 16 2 C 0.06 1.26 6.44 71.98 0.46 1.73 16 3 O -0.39 -9.57 8.66 -135.21 -1.17 -10.74 16 4 C 0.11 2.13 1.42 30.59 0.04 2.17 16 5 H 0.05 1.16 7.65 -2.39 -0.02 1.14 16 6 C -0.13 -2.39 3.61 29.84 0.11 -2.28 16 7 C 0.53 14.81 7.76 87.65 0.68 15.49 16 8 O -0.58 -20.99 15.65 10.74 0.17 -20.82 16 9 N -0.62 -17.26 3.35 -811.61 -2.72 -19.98 16 10 C 0.11 2.59 6.48 86.21 0.56 3.14 16 11 C -0.10 -2.81 3.70 -9.28 -0.03 -2.84 16 12 H 0.10 2.77 7.93 -2.39 -0.02 2.75 16 13 C 0.13 4.79 6.76 86.52 0.58 5.37 16 14 N -0.62 -30.72 3.21 -687.62 -2.21 -32.93 16 15 C -0.33 -18.24 10.22 84.03 0.86 -17.38 16 16 H 0.06 3.46 7.93 -2.91 -0.02 3.43 16 17 C -0.08 -4.73 5.15 84.86 0.44 -4.29 16 18 N -0.95 -59.10 12.79 21.65 0.28 -58.83 16 19 Si 1.12 51.00 29.98 68.60 2.06 53.05 16 20 H -0.28 -12.17 7.11 99.48 0.71 -11.47 16 21 H -0.29 -13.63 7.11 99.48 0.71 -12.93 16 22 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 23 C 0.16 7.28 4.31 86.39 0.37 7.66 16 24 C -0.08 -2.73 1.07 -50.80 -0.05 -2.79 16 25 C -0.11 -3.64 8.55 71.98 0.62 -3.03 16 26 C 0.12 4.17 6.23 86.49 0.54 4.71 16 27 C -0.11 -1.49 2.88 -10.79 -0.03 -1.52 16 28 C -0.14 -1.83 8.47 71.98 0.61 -1.22 16 29 C -0.15 -1.49 8.95 71.98 0.64 -0.84 16 30 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.06 0.99 7.64 -2.39 -0.02 0.97 16 34 H 0.03 0.79 8.14 -2.38 -0.02 0.77 16 35 H 0.11 1.90 6.78 -2.39 -0.02 1.89 16 36 H 0.14 1.66 6.07 -2.39 -0.01 1.65 16 37 H 0.08 1.77 7.11 -2.39 -0.02 1.75 16 38 H 0.12 1.69 7.35 -2.39 -0.02 1.67 16 39 H 0.03 1.00 7.18 -2.39 -0.02 0.99 16 40 H 0.06 2.10 8.14 -2.38 -0.02 2.08 16 41 H 0.25 15.99 6.42 -92.71 -0.60 15.39 16 42 H 0.03 1.58 7.16 -2.39 -0.02 1.56 16 43 H 0.01 0.32 6.83 -2.39 -0.02 0.30 16 44 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 45 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 46 H 0.07 1.93 8.14 -2.38 -0.02 1.91 16 47 H 0.07 2.37 7.61 -2.39 -0.02 2.36 16 48 H 0.05 1.85 7.15 -2.39 -0.02 1.83 16 49 H 0.07 0.99 7.65 -2.39 -0.02 0.97 16 50 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 51 H 0.05 0.77 7.67 -2.39 -0.02 0.75 16 52 H 0.06 0.72 6.81 -2.39 -0.02 0.70 16 53 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 54 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 55 H 0.07 0.57 6.46 -2.39 -0.02 0.56 16 Total: -1.00 -73.97 416.23 4.55 -69.42 By element: Atomic # 1 Polarization: 17.68 SS G_CDS: 1.01 Total: 18.69 kcal Atomic # 6 Polarization: -5.00 SS G_CDS: 7.14 Total: 2.13 kcal Atomic # 7 Polarization: -107.09 SS G_CDS: -4.65 Total: -111.74 kcal Atomic # 8 Polarization: -30.56 SS G_CDS: -1.00 Total: -31.56 kcal Atomic # 14 Polarization: 51.00 SS G_CDS: 2.06 Total: 53.05 kcal Total: -73.97 4.55 -69.42 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101267354.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.927 kcal (2) G-P(sol) polarization free energy of solvation -73.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds