Wall clock time and date at job start Tue Mar 31 2020 22:01:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42895 * 109.46888 * 2 1 4 4 C 1.42900 * 114.00216 * 184.69527 * 3 2 1 5 5 H 1.09004 * 109.46826 * 22.33091 * 4 3 2 6 6 C 1.52996 * 109.47415 * 142.32868 * 4 3 2 7 7 C 1.50702 * 109.47084 * 295.00373 * 6 4 3 8 8 O 1.21277 * 120.00255 * 359.97438 * 7 6 4 9 9 N 1.34784 * 120.00161 * 180.02562 * 7 6 4 10 10 C 1.47217 * 126.69748 * 359.68099 * 9 7 6 11 11 C 1.54075 * 106.21880 * 148.66979 * 10 9 7 12 12 H 1.09002 * 112.45898 * 141.24802 * 11 10 9 13 13 C 1.55964 * 109.70353 * 267.41898 * 11 10 9 14 14 N 1.47221 * 106.44852 * 131.73573 * 13 11 10 15 15 C 1.36939 * 126.70011 * 148.26408 * 14 13 11 16 16 H 1.07996 * 119.99699 * 180.02562 * 15 14 13 17 17 C 1.38807 * 119.99974 * 359.97438 * 15 14 13 18 18 N 1.31615 * 120.00517 * 0.02562 * 17 15 14 19 19 Si 1.86806 * 119.99697 * 179.97438 * 17 15 14 20 20 H 1.48493 * 109.47081 * 90.00285 * 19 17 15 21 21 H 1.48498 * 109.46887 * 210.00155 * 19 17 15 22 22 H 1.48504 * 109.47106 * 329.99967 * 19 17 15 23 23 C 1.47208 * 106.59524 * 328.26218 * 14 13 11 24 24 C 1.53787 * 106.37698 * 31.27315 * 23 14 13 25 25 C 1.53006 * 111.85721 * 104.04038 * 24 23 14 26 26 C 1.47209 * 126.70287 * 180.02562 * 9 7 6 27 27 C 1.52995 * 109.47621 * 262.33300 * 4 3 2 28 28 C 1.52998 * 109.47657 * 177.39764 * 27 4 3 29 29 C 1.53001 * 109.47452 * 57.39877 * 27 4 3 30 30 H 1.09000 * 109.47718 * 59.99547 * 1 2 3 31 31 H 1.09008 * 109.46979 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47109 * 299.99583 * 1 2 3 33 33 H 1.08999 * 109.47109 * 240.00417 * 2 1 3 34 34 H 1.09000 * 109.47718 * 120.00453 * 2 1 3 35 35 H 1.08994 * 109.47264 * 55.00247 * 6 4 3 36 36 H 1.09007 * 109.47358 * 175.00735 * 6 4 3 37 37 H 1.08994 * 110.07447 * 267.98198 * 10 9 7 38 38 H 1.09002 * 110.07520 * 29.52519 * 10 9 7 39 39 H 1.09000 * 110.42833 * 12.27493 * 13 11 10 40 40 H 1.09003 * 109.70366 * 250.80120 * 13 11 10 41 41 H 0.96999 * 120.00461 * 179.97438 * 18 17 15 42 42 H 1.08998 * 110.07524 * 272.04867 * 23 14 13 43 43 H 1.08994 * 110.07599 * 150.49911 * 23 14 13 44 44 H 1.09001 * 109.46901 * 182.05065 * 25 24 23 45 45 H 1.08995 * 109.46757 * 302.04873 * 25 24 23 46 46 H 1.08999 * 109.46888 * 62.04765 * 25 24 23 47 47 H 1.08998 * 110.07371 * 330.47204 * 26 9 7 48 48 H 1.08993 * 110.07493 * 92.01706 * 26 9 7 49 49 H 1.09002 * 109.47105 * 297.40009 * 27 4 3 50 50 H 1.09006 * 109.47067 * 59.99896 * 28 27 4 51 51 H 1.08999 * 109.47307 * 179.97438 * 28 27 4 52 52 H 1.08992 * 109.47113 * 300.00159 * 28 27 4 53 53 H 1.09002 * 109.46748 * 54.53586 * 29 27 4 54 54 H 1.09002 * 109.47647 * 174.54533 * 29 27 4 55 55 H 1.09000 * 109.46895 * 294.54370 * 29 27 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3472 0.0000 4 6 3.4266 1.4617 -0.1069 5 1 3.8315 0.5542 -0.5549 6 6 3.7768 2.6642 -0.9855 7 6 3.2898 2.4186 -2.3904 8 8 2.7192 1.3835 -2.6622 9 7 3.4892 3.3489 -3.3451 10 6 4.1549 4.6514 -3.1789 11 6 4.8327 4.9633 -4.5269 12 1 4.7620 6.0176 -4.7944 13 6 6.3041 4.4466 -4.5076 14 7 6.4975 3.6923 -5.7570 15 6 7.6604 3.5747 -6.4704 16 1 7.6800 2.9908 -7.3787 17 6 8.8138 4.2069 -6.0266 18 7 8.7898 4.9189 -4.9199 19 14 10.4004 4.0459 -6.9995 20 1 10.4819 5.1417 -7.9982 21 1 11.5590 4.1319 -6.0746 22 1 10.4215 2.7360 -7.6989 23 6 5.1965 3.0890 -6.0896 24 6 4.1229 4.0547 -5.5606 25 6 3.4799 4.8647 -6.6882 26 6 3.0776 3.2639 -4.7559 27 6 4.0290 1.6552 1.2861 28 6 5.5542 1.7128 1.1789 29 6 3.6248 0.4841 2.1839 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 3.2977 3.5579 -0.5860 36 1 4.8578 2.8047 -0.9952 37 1 3.4195 5.4196 -2.9403 38 1 4.9033 4.5909 -2.3888 39 1 6.4676 3.7958 -3.6486 40 1 6.9904 5.2927 -4.4715 41 1 9.5959 5.3603 -4.6096 42 1 5.0989 2.1185 -5.6033 43 1 5.1006 2.9783 -7.1696 44 1 2.7534 5.5599 -6.2676 45 1 4.2507 5.4223 -7.2201 46 1 2.9776 4.1887 -7.3802 47 1 3.0650 2.2233 -5.0800 48 1 2.0909 3.7085 -4.8852 49 1 3.6596 2.5865 1.7155 50 1 5.8422 2.5471 0.5393 51 1 5.9833 1.8511 2.1712 52 1 5.9236 0.7816 0.7495 53 1 3.9088 -0.4540 1.7071 54 1 4.1315 0.5713 3.1451 55 1 2.5461 0.5008 2.3391 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001101267355.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:01:20 Heat of formation + Delta-G solvation = -84.211596 kcal Electronic energy + Delta-G solvation = -31798.327562 eV Core-core repulsion = 27834.858187 eV Total energy + Delta-G solvation = -3963.469374 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.63714 -40.30648 -38.98867 -36.57162 -36.02515 -34.49265 -32.77190 -32.36207 -31.56921 -31.00635 -28.04995 -27.88589 -27.38367 -26.65610 -24.94973 -23.87201 -23.55318 -21.98399 -21.07482 -20.45566 -19.86299 -18.79231 -18.03654 -17.95378 -17.01547 -16.85178 -16.67875 -16.41178 -15.68081 -15.53531 -15.23091 -15.19143 -14.96666 -14.88384 -14.54336 -13.99867 -13.91346 -13.83243 -13.49459 -13.43111 -13.31575 -13.20576 -13.03227 -12.98520 -12.95471 -12.91748 -12.71159 -12.68236 -12.60818 -12.28002 -12.17336 -12.01191 -11.88875 -11.81190 -11.64011 -11.53346 -11.50310 -11.46058 -11.10261 -10.85011 -10.75363 -10.26700 -9.62838 -8.91655 -7.74607 -5.22815 1.46955 1.47984 1.56456 1.65728 2.03684 2.48613 2.75939 3.29557 3.37025 3.54295 3.66780 3.73403 3.88225 3.92466 4.01364 4.10845 4.21910 4.24568 4.24988 4.32210 4.36817 4.41721 4.45534 4.48770 4.54553 4.63643 4.68299 4.72457 4.75166 4.77042 4.78743 4.83669 4.89563 4.91302 4.95799 4.98756 5.02191 5.07222 5.09770 5.19254 5.20590 5.21544 5.26866 5.33460 5.40153 5.41922 5.46214 5.53645 5.62505 5.83724 6.35556 6.37796 6.59470 7.11627 7.17823 7.76925 8.44992 9.23254 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.013259 B = 0.003166 C = 0.002763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2111.334614 B = 8840.980640 C =10132.715537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.055 3.945 3 O -0.386 6.386 4 C 0.114 3.886 5 H 0.046 0.954 6 C -0.136 4.136 7 C 0.528 3.472 8 O -0.579 6.579 9 N -0.617 5.617 10 C 0.115 3.885 11 C -0.108 4.108 12 H 0.104 0.896 13 C 0.151 3.849 14 N -0.617 5.617 15 C -0.237 4.237 16 H 0.076 0.924 17 C -0.062 4.062 18 N -0.942 5.942 19 Si 0.978 3.022 20 H -0.283 1.283 21 H -0.292 1.292 22 H -0.277 1.277 23 C 0.143 3.857 24 C -0.078 4.078 25 C -0.115 4.115 26 C 0.124 3.876 27 C -0.107 4.107 28 C -0.151 4.151 29 C -0.146 4.146 30 H 0.044 0.956 31 H 0.085 0.915 32 H 0.068 0.932 33 H 0.028 0.972 34 H 0.065 0.935 35 H 0.119 0.881 36 H 0.114 0.886 37 H 0.099 0.901 38 H 0.081 0.919 39 H -0.019 1.019 40 H 0.093 0.907 41 H 0.249 0.751 42 H -0.004 1.004 43 H 0.043 0.957 44 H 0.079 0.921 45 H 0.048 0.952 46 H 0.065 0.935 47 H 0.055 0.945 48 H 0.086 0.914 49 H 0.086 0.914 50 H 0.058 0.942 51 H 0.074 0.926 52 H 0.048 0.952 53 H 0.048 0.952 54 H 0.070 0.930 55 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.317 -2.013 12.245 18.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.021 4.021 3 O -0.306 6.306 4 C 0.055 3.945 5 H 0.065 0.935 6 C -0.175 4.175 7 C 0.318 3.682 8 O -0.459 6.459 9 N -0.350 5.350 10 C -0.007 4.007 11 C -0.129 4.129 12 H 0.122 0.878 13 C 0.026 3.974 14 N -0.341 5.341 15 C -0.366 4.366 16 H 0.094 0.906 17 C -0.254 4.254 18 N -0.592 5.592 19 Si 0.807 3.193 20 H -0.209 1.209 21 H -0.219 1.219 22 H -0.202 1.202 23 C 0.017 3.983 24 C -0.080 4.080 25 C -0.173 4.173 26 C 0.001 3.999 27 C -0.126 4.126 28 C -0.209 4.209 29 C -0.203 4.203 30 H 0.064 0.936 31 H 0.104 0.896 32 H 0.087 0.913 33 H 0.047 0.953 34 H 0.083 0.917 35 H 0.137 0.863 36 H 0.132 0.868 37 H 0.117 0.883 38 H 0.099 0.901 39 H -0.001 1.001 40 H 0.110 0.890 41 H 0.059 0.941 42 H 0.014 0.986 43 H 0.062 0.938 44 H 0.098 0.902 45 H 0.067 0.933 46 H 0.084 0.916 47 H 0.074 0.926 48 H 0.104 0.896 49 H 0.105 0.895 50 H 0.077 0.923 51 H 0.093 0.907 52 H 0.067 0.933 53 H 0.067 0.933 54 H 0.089 0.911 55 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -14.515 -2.436 12.172 19.099 hybrid contribution 1.433 -0.629 -0.816 1.765 sum -13.082 -3.064 11.356 17.592 Atomic orbital electron populations 1.21707 0.93107 1.02972 1.02312 1.22652 0.96124 0.83550 0.99761 1.87801 1.21065 1.27305 1.94416 1.21835 0.81748 0.96421 0.94477 0.93546 1.21985 1.03680 1.01751 0.90091 1.20743 0.78365 0.81751 0.87315 1.90628 1.44661 1.27540 1.83054 1.48600 1.57722 1.18877 1.09782 1.22253 0.96597 0.84221 0.97673 1.23414 0.95769 0.99850 0.93843 0.87757 1.22140 0.93617 0.96088 0.85596 1.44767 1.05671 1.57507 1.26125 1.19404 0.87078 1.25869 1.04273 0.90638 1.25532 1.00767 1.00308 0.98815 1.69837 1.27454 1.37920 1.23961 0.85081 0.78977 0.77809 0.77454 1.20943 1.21871 1.20193 1.21544 0.85743 0.93534 0.97461 1.22088 0.94253 0.95514 0.96133 1.21594 1.00010 0.99326 0.96364 1.21999 0.97484 0.99959 0.80464 1.21547 0.95970 1.00833 0.94245 1.21922 0.94180 1.01884 1.02884 1.21888 1.01741 0.97052 0.99620 0.93638 0.89595 0.91319 0.95318 0.91731 0.86277 0.86812 0.88289 0.90062 1.00116 0.88964 0.94121 0.98614 0.93848 0.90164 0.93314 0.91594 0.92620 0.89566 0.89543 0.92295 0.90734 0.93318 0.93289 0.91083 0.92123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.85 10.28 71.98 0.74 -2.11 16 2 C 0.06 1.32 6.01 71.98 0.43 1.75 16 3 O -0.39 -10.40 8.87 -135.21 -1.20 -11.60 16 4 C 0.11 2.84 1.42 30.59 0.04 2.88 16 5 H 0.05 1.35 7.45 -2.38 -0.02 1.33 16 6 C -0.14 -3.45 4.22 29.85 0.13 -3.33 16 7 C 0.53 17.48 7.76 87.66 0.68 18.16 16 8 O -0.58 -22.93 15.65 10.75 0.17 -22.76 16 9 N -0.62 -19.37 3.32 -814.54 -2.70 -22.07 16 10 C 0.12 3.17 6.21 86.61 0.54 3.70 16 11 C -0.11 -3.67 3.80 -8.77 -0.03 -3.71 16 12 H 0.10 3.24 7.88 -2.39 -0.02 3.22 16 13 C 0.15 7.09 5.76 87.27 0.50 7.59 16 14 N -0.62 -31.71 3.39 -690.97 -2.34 -34.06 16 15 C -0.24 -13.30 10.34 84.03 0.87 -12.43 16 16 H 0.08 4.12 7.83 -2.91 -0.02 4.10 16 17 C -0.06 -3.43 5.49 84.86 0.47 -2.96 16 18 N -0.94 -54.14 10.08 21.65 0.22 -53.92 16 19 Si 0.98 45.15 29.55 68.60 2.03 47.18 16 20 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 21 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 22 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 23 C 0.14 6.13 6.37 86.51 0.55 6.68 16 24 C -0.08 -2.57 1.08 -51.01 -0.06 -2.62 16 25 C -0.12 -3.08 8.43 71.98 0.61 -2.47 16 26 C 0.12 3.86 5.97 86.51 0.52 4.37 16 27 C -0.11 -2.03 2.71 -10.80 -0.03 -2.06 16 28 C -0.15 -2.78 8.91 71.98 0.64 -2.14 16 29 C -0.15 -2.43 7.75 71.98 0.56 -1.88 16 30 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.09 1.32 8.14 -2.38 -0.02 1.30 16 32 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.03 0.81 8.00 -2.39 -0.02 0.79 16 34 H 0.06 1.27 5.55 -2.39 -0.01 1.26 16 35 H 0.12 2.52 8.14 -2.39 -0.02 2.50 16 36 H 0.11 2.76 5.98 -2.38 -0.01 2.75 16 37 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 38 H 0.08 2.20 6.78 -2.39 -0.02 2.18 16 39 H -0.02 -0.97 7.52 -2.39 -0.02 -0.99 16 40 H 0.09 4.92 5.44 -2.39 -0.01 4.91 16 41 H 0.25 13.85 8.31 -92.71 -0.77 13.08 16 42 H 0.00 -0.18 7.38 -2.39 -0.02 -0.20 16 43 H 0.04 1.80 7.82 -2.39 -0.02 1.79 16 44 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 45 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 46 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 47 H 0.06 1.96 7.26 -2.39 -0.02 1.95 16 48 H 0.09 2.25 7.87 -2.39 -0.02 2.23 16 49 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 50 H 0.06 1.12 6.39 -2.38 -0.02 1.10 16 51 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 52 H 0.05 0.96 8.14 -2.39 -0.02 0.95 16 53 H 0.05 0.85 7.91 -2.39 -0.02 0.83 16 54 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 55 H 0.06 1.02 6.57 -2.39 -0.02 1.00 16 Total: -1.00 -69.83 414.31 4.16 -65.67 By element: Atomic # 1 Polarization: 21.29 SS G_CDS: 0.84 Total: 22.13 kcal Atomic # 6 Polarization: 2.29 SS G_CDS: 7.15 Total: 9.44 kcal Atomic # 7 Polarization: -105.22 SS G_CDS: -4.83 Total: -110.05 kcal Atomic # 8 Polarization: -33.33 SS G_CDS: -1.03 Total: -34.36 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.18 kcal Total: -69.83 4.16 -65.67 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101267355.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.546 kcal (2) G-P(sol) polarization free energy of solvation -69.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds