Wall clock time and date at job start Tue Mar 31 2020 22:04:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50692 * 120.00180 * 2 1 4 4 C 1.50701 * 119.99830 * 180.02562 * 2 1 3 5 5 H 1.09006 * 109.47429 * 355.00110 * 4 2 1 6 6 C 1.52997 * 109.47323 * 114.99976 * 4 2 1 7 7 C 1.50706 * 109.47357 * 184.99927 * 6 4 2 8 8 O 1.21274 * 119.99686 * 0.02562 * 7 6 4 9 9 N 1.34773 * 119.99709 * 179.97438 * 7 6 4 10 10 C 1.46505 * 119.99807 * 180.02562 * 9 7 6 11 11 C 1.52997 * 109.47454 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.47224 * 179.97438 * 11 10 9 13 13 H 1.09004 * 110.63526 * 51.86113 * 12 11 10 14 14 C 1.54327 * 110.85377 * 288.69638 * 12 11 10 15 15 N 1.47023 * 107.26742 * 219.67414 * 14 12 11 16 16 C 1.36931 * 125.65252 * 178.84820 * 15 14 12 17 17 H 1.08002 * 120.00098 * 359.71187 * 16 15 14 18 18 C 1.38812 * 120.00429 * 179.71302 * 16 15 14 19 19 N 1.31624 * 119.99535 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00484 * 179.97438 * 18 16 15 21 21 H 1.48490 * 109.47339 * 180.02562 * 20 18 16 22 22 H 1.48493 * 109.47239 * 300.00542 * 20 18 16 23 23 H 1.48504 * 109.46636 * 60.00101 * 20 18 16 24 24 C 1.47429 * 108.69980 * 358.58082 * 15 14 12 25 25 C 1.54908 * 104.83070 * 24.35768 * 24 15 14 26 26 H 1.09000 * 111.00222 * 81.06850 * 25 24 15 27 27 C 1.53005 * 111.00525 * 204.87278 * 25 24 15 28 28 O 1.42895 * 109.47174 * 235.00089 * 4 2 1 29 29 C 1.42901 * 114.00002 * 89.99864 * 28 4 2 30 30 C 1.53007 * 109.47059 * 180.02562 * 29 28 4 31 31 H 1.08002 * 120.00154 * 179.97438 * 1 2 3 32 32 H 1.08001 * 120.00083 * 0.02562 * 1 2 3 33 33 H 1.08999 * 109.47311 * 180.02562 * 3 2 1 34 34 H 1.08997 * 109.47261 * 299.99713 * 3 2 1 35 35 H 1.08999 * 109.47105 * 59.99788 * 3 2 1 36 36 H 1.08996 * 109.47366 * 64.99717 * 6 4 2 37 37 H 1.08999 * 109.47231 * 305.00036 * 6 4 2 38 38 H 0.96999 * 120.00579 * 0.02562 * 9 7 6 39 39 H 1.08996 * 109.47071 * 59.99534 * 10 9 7 40 40 H 1.08999 * 109.46925 * 300.00221 * 10 9 7 41 41 H 1.09000 * 109.46906 * 59.99905 * 11 10 9 42 42 H 1.08999 * 109.47231 * 300.00029 * 11 10 9 43 43 H 1.08998 * 109.99759 * 100.19689 * 14 12 11 44 44 H 1.08998 * 109.77715 * 339.02679 * 14 12 11 45 45 H 0.97005 * 119.99717 * 179.97438 * 19 18 16 46 46 H 1.09000 * 110.36756 * 143.19419 * 24 15 14 47 47 H 1.08993 * 110.36856 * 265.52140 * 24 15 14 48 48 H 1.09002 * 109.46455 * 58.54793 * 27 25 24 49 49 H 1.08995 * 109.47373 * 178.54653 * 27 25 24 50 50 H 1.08994 * 109.47241 * 298.55284 * 27 25 24 51 51 H 1.08999 * 109.47347 * 299.99947 * 29 28 4 52 52 H 1.08995 * 109.47366 * 60.00586 * 29 28 4 53 53 H 1.08999 * 109.46822 * 300.00053 * 30 29 28 54 54 H 1.08999 * 109.47432 * 59.99854 * 30 29 28 55 55 H 1.08997 * 109.47302 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 2.0634 -1.3051 -0.0006 5 1 1.3585 -2.1318 0.0886 6 6 2.8464 -1.4415 -1.3079 7 6 3.5008 -2.7979 -1.3625 8 8 3.3549 -3.5788 -0.4462 9 7 4.2473 -3.1435 -2.4301 10 6 4.8830 -4.4623 -2.4834 11 6 5.6661 -4.5986 -3.7907 12 6 6.3305 -5.9757 -3.8461 13 1 5.6003 -6.7624 -3.6562 14 6 7.4987 -6.0628 -2.8415 15 7 8.5836 -6.8076 -3.4972 16 6 9.8075 -7.0833 -2.9487 17 1 10.0423 -6.7400 -1.9519 18 6 10.7467 -7.8040 -3.6736 19 7 10.4608 -8.2219 -4.8885 20 14 12.4166 -8.1796 -2.9255 21 1 13.2304 -8.9554 -3.8955 22 1 13.1117 -6.9077 -2.6026 23 1 12.2354 -8.9737 -1.6838 24 6 8.1330 -7.2140 -4.8409 25 6 7.0289 -6.1936 -5.2143 26 1 7.4639 -5.2648 -5.5832 27 6 6.0584 -6.7858 -6.2383 28 8 2.9708 -1.3318 1.1030 29 6 2.4137 -1.8776 2.3004 30 6 3.4678 -1.8560 3.4093 31 1 -0.5400 -0.9353 -0.0004 32 1 -0.5400 0.9353 -0.0004 33 1 3.1351 1.1058 -0.0005 34 1 1.8002 1.8766 -0.8900 35 1 1.8001 1.8766 0.8900 36 1 3.6116 -0.6667 -1.3557 37 1 2.1657 -1.3323 -2.1522 38 1 4.3637 -2.5190 -3.1632 39 1 4.1176 -5.2368 -2.4355 40 1 5.5639 -4.5718 -1.6394 41 1 6.4315 -3.8241 -3.8382 42 1 4.9855 -4.4890 -4.6351 43 1 7.1786 -6.5891 -1.9422 44 1 7.8400 -5.0599 -2.5849 45 1 11.1172 -8.7253 -5.3953 46 1 8.9580 -7.1571 -5.5510 47 1 7.7232 -8.2236 -4.8143 48 1 5.6053 -7.6889 -5.8293 49 1 5.2789 -6.0581 -6.4634 50 1 6.5998 -7.0326 -7.1515 51 1 1.5536 -1.2817 2.6056 52 1 2.0980 -2.9049 2.1189 53 1 4.3281 -2.4517 3.1044 54 1 3.7832 -0.8286 3.5908 55 1 3.0431 -2.2727 4.3225 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001103053035.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:04:14 Heat of formation + Delta-G solvation = -82.980071 kcal Electronic energy + Delta-G solvation = -29702.300739 eV Core-core repulsion = 25738.884767 eV Total energy + Delta-G solvation = -3963.415971 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.96996 -39.82379 -39.18046 -36.40585 -36.08569 -34.98683 -32.92917 -32.54380 -32.25639 -30.92269 -28.46791 -28.19797 -27.40280 -25.86334 -24.69452 -23.67348 -23.32158 -21.56693 -21.28531 -20.59488 -19.76738 -18.87359 -17.95589 -17.81664 -17.12098 -16.96605 -16.57503 -16.49714 -16.00868 -15.69777 -15.45488 -15.09625 -14.95336 -14.68215 -14.60755 -14.36232 -14.12339 -13.94256 -13.69413 -13.63947 -13.38242 -13.32136 -13.15341 -12.86156 -12.80597 -12.74528 -12.71935 -12.60885 -12.47684 -12.39693 -12.18108 -11.97809 -11.96749 -11.78804 -11.77537 -11.43157 -11.26405 -11.09503 -10.80157 -10.72251 -10.45908 -10.06977 -10.02870 -8.88230 -7.77770 -5.22515 1.20104 1.43885 1.47450 1.53934 1.72519 2.24858 2.48475 2.80977 3.30175 3.64832 3.71968 3.74679 3.91832 3.92872 3.93849 4.07452 4.13731 4.20411 4.30158 4.33943 4.36505 4.47305 4.49029 4.52356 4.57427 4.63212 4.73739 4.75071 4.80030 4.82914 4.84373 4.86110 4.93937 5.01328 5.01722 5.05519 5.08287 5.13172 5.19149 5.20659 5.23068 5.29468 5.40365 5.45226 5.51053 5.54887 5.65207 5.76862 5.82818 5.85446 6.32095 6.34915 6.63741 7.11130 7.34671 7.78996 8.43110 9.23189 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.015199 B = 0.002024 C = 0.001855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1841.779375 B =13829.504506 C =15094.694483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.156 4.156 3 C -0.112 4.112 4 C 0.137 3.863 5 H 0.058 0.942 6 C -0.129 4.129 7 C 0.507 3.493 8 O -0.581 6.581 9 N -0.719 5.719 10 C 0.126 3.874 11 C -0.099 4.099 12 C -0.078 4.078 13 H 0.075 0.925 14 C 0.134 3.866 15 N -0.630 5.630 16 C -0.242 4.242 17 H 0.075 0.925 18 C -0.068 4.068 19 N -0.947 5.947 20 Si 0.981 3.019 21 H -0.290 1.290 22 H -0.276 1.276 23 H -0.281 1.281 24 C 0.159 3.841 25 C -0.100 4.100 26 H 0.072 0.928 27 C -0.126 4.126 28 O -0.387 6.387 29 C 0.063 3.937 30 C -0.147 4.147 31 H 0.098 0.902 32 H 0.117 0.883 33 H 0.058 0.942 34 H 0.080 0.920 35 H 0.065 0.935 36 H 0.117 0.883 37 H 0.137 0.863 38 H 0.417 0.583 39 H 0.059 0.941 40 H 0.041 0.959 41 H 0.072 0.928 42 H 0.100 0.900 43 H 0.008 0.992 44 H 0.024 0.976 45 H 0.247 0.753 46 H 0.069 0.931 47 H -0.018 1.018 48 H 0.047 0.953 49 H 0.081 0.919 50 H 0.051 0.949 51 H 0.056 0.944 52 H 0.035 0.965 53 H 0.044 0.956 54 H 0.065 0.935 55 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.887 20.273 4.816 30.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.156 4.156 3 C -0.168 4.168 4 C 0.079 3.921 5 H 0.076 0.924 6 C -0.168 4.168 7 C 0.295 3.705 8 O -0.460 6.460 9 N -0.371 5.371 10 C 0.002 3.998 11 C -0.137 4.137 12 C -0.098 4.098 13 H 0.094 0.906 14 C 0.009 3.991 15 N -0.356 5.356 16 C -0.372 4.372 17 H 0.093 0.907 18 C -0.261 4.261 19 N -0.597 5.597 20 Si 0.808 3.192 21 H -0.216 1.216 22 H -0.202 1.202 23 H -0.207 1.207 24 C 0.034 3.966 25 C -0.120 4.120 26 H 0.091 0.909 27 C -0.184 4.184 28 O -0.307 6.307 29 C -0.014 4.014 30 C -0.204 4.204 31 H 0.117 0.883 32 H 0.135 0.865 33 H 0.077 0.923 34 H 0.099 0.901 35 H 0.084 0.916 36 H 0.135 0.865 37 H 0.155 0.845 38 H 0.254 0.746 39 H 0.077 0.923 40 H 0.060 0.940 41 H 0.091 0.909 42 H 0.118 0.882 43 H 0.026 0.974 44 H 0.042 0.958 45 H 0.057 0.943 46 H 0.087 0.913 47 H -0.001 1.001 48 H 0.066 0.934 49 H 0.100 0.900 50 H 0.070 0.930 51 H 0.074 0.926 52 H 0.053 0.947 53 H 0.063 0.937 54 H 0.084 0.916 55 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -22.595 19.678 5.417 30.448 hybrid contribution 1.113 -0.828 0.330 1.426 sum -21.482 18.849 5.747 29.151 Atomic orbital electron populations 1.23923 0.94833 1.02956 0.99688 1.22226 0.95729 0.96083 1.01561 1.20731 1.00015 0.93550 1.02522 1.20840 0.90679 0.94291 0.86267 0.92421 1.21850 1.02078 0.93948 0.98960 1.21139 0.78447 0.89683 0.81236 1.90692 1.62662 1.54427 1.38247 1.45920 1.51229 1.17831 1.22164 1.21205 0.95808 0.84682 0.98099 1.21624 0.99375 0.95819 0.96855 1.22050 0.95225 0.97913 0.94602 0.90626 1.21563 0.88670 0.94170 0.94693 1.44862 1.11932 1.63718 1.15057 1.19404 0.90219 1.28669 0.98864 0.90713 1.25648 1.02301 1.00786 0.97320 1.70067 1.35012 1.43050 1.11566 0.85122 0.79157 0.77848 0.77035 1.21602 1.20179 1.20702 1.21796 0.95150 0.92446 0.87178 1.22473 0.95937 0.98868 0.94713 0.90938 1.21593 0.98385 1.00734 0.97676 1.87875 1.39464 1.83323 1.20027 1.22446 0.96861 0.96788 0.85270 1.21720 0.98715 1.02705 0.97234 0.88322 0.86494 0.92307 0.90090 0.91595 0.86460 0.84535 0.74592 0.92252 0.94029 0.90888 0.88207 0.97447 0.95759 0.94303 0.91261 1.00051 0.93420 0.89982 0.93035 0.92586 0.94650 0.93701 0.91571 0.89501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.93 13.95 67.78 0.95 -0.98 16 2 C -0.16 -2.07 5.05 -16.49 -0.08 -2.16 16 3 C -0.11 -1.24 9.69 71.23 0.69 -0.55 16 4 C 0.14 2.49 1.78 29.85 0.05 2.54 16 5 H 0.06 1.18 7.25 -2.38 -0.02 1.17 16 6 C -0.13 -1.91 5.24 29.85 0.16 -1.75 16 7 C 0.51 11.65 7.71 87.66 0.68 12.33 16 8 O -0.58 -19.04 15.42 10.76 0.17 -18.87 16 9 N -0.72 -13.81 5.56 -463.07 -2.57 -16.39 16 10 C 0.13 3.12 5.56 86.38 0.48 3.60 16 11 C -0.10 -2.28 4.73 30.59 0.14 -2.13 16 12 C -0.08 -2.56 2.39 -9.61 -0.02 -2.59 16 13 H 0.08 2.44 8.01 -2.39 -0.02 2.42 16 14 C 0.13 5.80 6.24 86.73 0.54 6.34 16 15 N -0.63 -34.03 3.39 -691.99 -2.35 -36.38 16 16 C -0.24 -14.26 10.27 84.03 0.86 -13.40 16 17 H 0.07 4.26 7.83 -2.91 -0.02 4.24 16 18 C -0.07 -3.99 5.49 84.86 0.47 -3.53 16 19 N -0.95 -57.83 10.09 21.65 0.22 -57.61 16 20 Si 0.98 47.09 29.55 68.60 2.03 49.11 16 21 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 22 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 23 H -0.28 -13.15 7.11 99.48 0.71 -12.45 16 24 C 0.16 8.02 5.36 86.85 0.47 8.49 16 25 C -0.10 -3.59 3.09 -9.40 -0.03 -3.62 16 26 H 0.07 2.55 8.05 -2.39 -0.02 2.53 16 27 C -0.13 -3.56 9.30 71.98 0.67 -2.89 16 28 O -0.39 -9.03 9.01 -135.20 -1.22 -10.25 16 29 C 0.06 1.31 6.46 71.98 0.46 1.77 16 30 C -0.15 -2.74 10.28 71.98 0.74 -2.00 16 31 H 0.10 1.05 7.84 -2.91 -0.02 1.02 16 32 H 0.12 0.91 8.05 -2.91 -0.02 0.89 16 33 H 0.06 0.77 7.50 -2.39 -0.02 0.75 16 34 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 35 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 36 H 0.12 1.44 7.66 -2.39 -0.02 1.42 16 37 H 0.14 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.42 4.91 8.47 -92.71 -0.79 4.12 16 39 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 40 H 0.04 1.28 7.68 -2.39 -0.02 1.26 16 41 H 0.07 1.69 7.94 -2.39 -0.02 1.68 16 42 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 43 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 44 H 0.02 1.04 7.69 -2.39 -0.02 1.02 16 45 H 0.25 14.61 8.31 -92.70 -0.77 13.84 16 46 H 0.07 3.98 5.87 -2.39 -0.01 3.97 16 47 H -0.02 -1.01 8.04 -2.39 -0.02 -1.03 16 48 H 0.05 1.37 8.11 -2.39 -0.02 1.36 16 49 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 50 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 51 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 52 H 0.04 0.84 8.08 -2.39 -0.02 0.82 16 53 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 54 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 55 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 Total: -1.00 -77.17 437.02 3.54 -73.63 By element: Atomic # 1 Polarization: 17.22 SS G_CDS: 0.04 Total: 17.26 kcal Atomic # 6 Polarization: -7.74 SS G_CDS: 7.22 Total: -0.52 kcal Atomic # 7 Polarization: -105.67 SS G_CDS: -4.70 Total: -110.37 kcal Atomic # 8 Polarization: -28.07 SS G_CDS: -1.05 Total: -29.12 kcal Atomic # 14 Polarization: 47.09 SS G_CDS: 2.03 Total: 49.11 kcal Total: -77.17 3.54 -73.63 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001103053035.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.346 kcal (2) G-P(sol) polarization free energy of solvation -77.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds