Wall clock time and date at job start Tue Mar 31 2020 22:01:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50698 * 120.00095 * 2 1 4 4 C 1.50701 * 119.99472 * 179.97438 * 2 1 3 5 5 H 1.09001 * 109.47582 * 355.00322 * 4 2 1 6 6 C 1.53005 * 109.46825 * 115.00480 * 4 2 1 7 7 C 1.50698 * 109.47139 * 184.99582 * 6 4 2 8 8 O 1.21290 * 120.00009 * 0.02562 * 7 6 4 9 9 N 1.34772 * 120.00139 * 179.97438 * 7 6 4 10 10 C 1.48140 * 127.84010 * 359.97438 * 9 7 6 11 11 C 1.54392 * 104.62267 * 140.41666 * 10 9 7 12 12 H 1.08994 * 110.34182 * 142.73583 * 11 10 9 13 13 C 1.53004 * 110.43167 * 264.95307 * 11 10 9 14 14 C 1.54287 * 104.95570 * 23.87027 * 11 10 9 15 15 H 1.09004 * 110.33776 * 241.02917 * 14 11 10 16 16 C 1.52992 * 110.34599 * 118.87291 * 14 11 10 17 17 C 1.52997 * 109.47482 * 176.47191 * 16 14 11 18 18 N 1.46505 * 109.47212 * 179.97438 * 17 16 14 19 19 C 1.36936 * 119.99992 * 179.97438 * 18 17 16 20 20 H 1.08006 * 119.99834 * 0.02562 * 19 18 17 21 21 C 1.38801 * 120.00093 * 180.02562 * 19 18 17 22 22 N 1.31619 * 120.00176 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 120.00265 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.46968 * 0.02562 * 23 21 19 25 25 H 1.48497 * 109.47299 * 119.99957 * 23 21 19 26 26 H 1.48495 * 109.47075 * 240.00117 * 23 21 19 27 27 C 1.48313 * 127.77061 * 179.91265 * 9 7 6 28 28 O 1.42905 * 109.47091 * 234.99796 * 4 2 1 29 29 C 1.42907 * 113.99458 * 90.00303 * 28 4 2 30 30 C 1.52998 * 109.46703 * 180.02562 * 29 28 4 31 31 H 1.08005 * 120.00176 * 179.97438 * 1 2 3 32 32 H 1.08003 * 119.99779 * 0.02562 * 1 2 3 33 33 H 1.08996 * 109.46791 * 269.99579 * 3 2 1 34 34 H 1.08999 * 109.47383 * 30.00039 * 3 2 1 35 35 H 1.09000 * 109.46569 * 149.99825 * 3 2 1 36 36 H 1.09002 * 109.47314 * 65.00105 * 6 4 2 37 37 H 1.09000 * 109.47097 * 304.99582 * 6 4 2 38 38 H 1.09005 * 110.40853 * 21.63114 * 10 9 7 39 39 H 1.09003 * 110.41277 * 259.20537 * 10 9 7 40 40 H 1.08998 * 109.46640 * 175.58191 * 13 11 10 41 41 H 1.08995 * 109.46940 * 295.58963 * 13 11 10 42 42 H 1.09000 * 109.46544 * 55.58838 * 13 11 10 43 43 H 1.09002 * 109.47103 * 56.46944 * 16 14 11 44 44 H 1.08998 * 109.46862 * 296.47756 * 16 14 11 45 45 H 1.09002 * 109.47153 * 59.99783 * 17 16 14 46 46 H 1.09001 * 109.46832 * 299.99974 * 17 16 14 47 47 H 0.96996 * 119.99606 * 0.02562 * 18 17 16 48 48 H 0.97001 * 120.00803 * 179.97438 * 22 21 19 49 49 H 1.08997 * 110.38786 * 100.78736 * 27 9 7 50 50 H 1.09002 * 110.50737 * 338.30450 * 27 9 7 51 51 H 1.09000 * 109.46928 * 300.00200 * 29 28 4 52 52 H 1.09004 * 109.47148 * 60.00466 * 29 28 4 53 53 H 1.09007 * 109.47030 * 180.02562 * 30 29 28 54 54 H 1.09000 * 109.47552 * 299.99769 * 30 29 28 55 55 H 1.08996 * 109.47180 * 60.00078 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0634 -1.3052 0.0006 5 1 1.3585 -2.1317 0.0905 6 6 2.8464 -1.4426 -1.3067 7 6 3.5008 -2.7990 -1.3601 8 8 3.3549 -3.5793 -0.4430 9 7 4.2474 -3.1455 -2.4273 10 6 4.5379 -2.3371 -3.6342 11 6 6.0199 -2.6305 -3.9524 12 1 6.1738 -2.6777 -5.0304 13 6 6.9212 -1.5600 -3.3337 14 6 6.3006 -4.0048 -3.3099 15 1 7.0805 -3.9172 -2.5534 16 6 6.7103 -5.0186 -4.3800 17 6 7.0683 -6.3480 -3.7127 18 7 7.4600 -7.3190 -4.7375 19 6 7.8259 -8.5877 -4.3745 20 1 7.8252 -8.8726 -3.3327 21 6 8.1975 -9.5074 -5.3453 22 7 8.1988 -9.1600 -6.6149 23 14 8.6959 -11.2383 -4.8502 24 1 8.6101 -11.3749 -3.3740 25 1 7.7832 -12.2187 -5.4914 26 1 10.0898 -11.4974 -5.2917 27 6 4.9650 -4.4229 -2.6578 28 8 2.9709 -1.3309 1.1042 29 6 2.4137 -1.8757 2.3021 30 6 3.4677 -1.8531 3.4109 31 1 -0.5401 -0.9353 -0.0004 32 1 -0.5400 0.9354 -0.0004 33 1 2.2452 1.6196 -1.0276 34 1 1.4745 2.0648 0.5138 35 1 3.0159 1.1746 0.5139 36 1 3.6117 -0.6679 -1.3550 37 1 2.1657 -1.3341 -2.1511 38 1 4.3970 -1.2767 -3.4244 39 1 3.9023 -2.6491 -4.4629 40 1 7.9656 -1.8238 -3.5003 41 1 6.7113 -0.5961 -3.7973 42 1 6.7286 -1.4977 -2.2626 43 1 7.5752 -4.6414 -4.9257 44 1 5.8822 -5.1709 -5.0722 45 1 6.2034 -6.7252 -3.1670 46 1 7.8965 -6.1957 -3.0205 47 1 7.4610 -7.0629 -5.6730 48 1 8.4588 -9.8026 -7.2934 49 1 4.3958 -5.0616 -3.3332 50 1 5.1471 -4.9345 -1.7127 51 1 1.5536 -1.2794 2.6067 52 1 2.0979 -2.9032 2.1214 53 1 3.0429 -2.2691 4.3246 54 1 4.3281 -2.4491 3.1066 55 1 3.7831 -0.8255 3.5915 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001104255379.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:01:33 Heat of formation + Delta-G solvation = -88.753321 kcal Electronic energy + Delta-G solvation = -30075.575681 eV Core-core repulsion = 26111.909363 eV Total energy + Delta-G solvation = -3963.666318 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.31035 -39.88994 -38.70492 -36.85834 -36.10246 -34.55005 -33.35949 -32.67693 -31.84099 -31.04155 -28.50567 -28.17426 -27.39658 -26.18986 -24.71712 -23.88673 -23.68283 -22.09333 -20.88250 -20.14020 -19.80460 -19.17054 -18.05701 -17.81805 -16.96226 -16.72632 -16.66783 -16.55390 -16.02899 -15.48170 -15.30835 -15.23134 -15.09849 -14.96292 -14.58724 -14.42485 -14.25968 -14.06156 -13.90480 -13.64610 -13.36376 -13.16343 -13.12687 -12.97220 -12.90792 -12.80927 -12.77048 -12.58574 -12.49214 -12.35399 -12.23908 -12.10375 -12.00540 -11.90814 -11.80811 -11.57471 -11.51080 -11.26609 -10.95761 -10.86991 -10.49186 -10.08730 -9.71307 -9.02359 -7.97973 -5.26867 1.18945 1.45329 1.46126 1.56522 1.65073 1.96464 2.53738 2.76752 3.35197 3.36460 3.61737 3.65878 3.77162 3.89922 3.91053 4.06387 4.14704 4.19707 4.24103 4.30765 4.33944 4.39528 4.46585 4.46982 4.50226 4.52614 4.61054 4.66310 4.70109 4.72774 4.79777 4.81411 4.85285 4.91884 4.93287 4.94084 5.00218 5.04811 5.07215 5.11592 5.19825 5.21744 5.22121 5.30057 5.37226 5.39162 5.47446 5.56674 5.63962 5.82139 6.25355 6.31693 6.60445 7.16748 7.31250 8.07058 8.31331 9.25605 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.016300 B = 0.002067 C = 0.001944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1717.365417 B =13540.755794 C =14399.262790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.155 4.155 3 C -0.113 4.113 4 C 0.139 3.861 5 H 0.054 0.946 6 C -0.121 4.121 7 C 0.527 3.473 8 O -0.583 6.583 9 N -0.624 5.624 10 C 0.103 3.897 11 C -0.098 4.098 12 H 0.102 0.898 13 C -0.138 4.138 14 C -0.083 4.083 15 H 0.073 0.927 16 C -0.099 4.099 17 C 0.149 3.851 18 N -0.747 5.747 19 C -0.248 4.248 20 H 0.070 0.930 21 C -0.076 4.076 22 N -0.967 5.967 23 Si 0.974 3.026 24 H -0.270 1.270 25 H -0.291 1.291 26 H -0.290 1.290 27 C 0.110 3.890 28 O -0.385 6.385 29 C 0.062 3.938 30 C -0.145 4.145 31 H 0.096 0.904 32 H 0.119 0.881 33 H 0.081 0.919 34 H 0.069 0.931 35 H 0.058 0.942 36 H 0.119 0.881 37 H 0.131 0.869 38 H 0.108 0.892 39 H 0.088 0.912 40 H 0.054 0.946 41 H 0.079 0.921 42 H 0.043 0.957 43 H 0.070 0.930 44 H 0.067 0.933 45 H 0.014 0.986 46 H 0.013 0.987 47 H 0.376 0.624 48 H 0.253 0.747 49 H 0.068 0.932 50 H 0.054 0.946 51 H 0.056 0.944 52 H 0.033 0.967 53 H 0.086 0.914 54 H 0.044 0.956 55 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.955 28.021 11.649 33.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.155 4.155 3 C -0.169 4.169 4 C 0.081 3.919 5 H 0.073 0.927 6 C -0.160 4.160 7 C 0.318 3.682 8 O -0.463 6.463 9 N -0.357 5.357 10 C -0.019 4.019 11 C -0.118 4.118 12 H 0.120 0.880 13 C -0.196 4.196 14 C -0.103 4.103 15 H 0.092 0.908 16 C -0.137 4.137 17 C 0.022 3.978 18 N -0.389 5.389 19 C -0.380 4.380 20 H 0.088 0.912 21 C -0.268 4.268 22 N -0.618 5.618 23 Si 0.802 3.198 24 H -0.194 1.194 25 H -0.218 1.218 26 H -0.217 1.217 27 C -0.013 4.013 28 O -0.305 6.305 29 C -0.014 4.014 30 C -0.202 4.202 31 H 0.114 0.886 32 H 0.137 0.863 33 H 0.100 0.900 34 H 0.088 0.912 35 H 0.077 0.923 36 H 0.137 0.863 37 H 0.149 0.851 38 H 0.126 0.874 39 H 0.106 0.894 40 H 0.073 0.927 41 H 0.098 0.902 42 H 0.063 0.937 43 H 0.089 0.911 44 H 0.086 0.914 45 H 0.032 0.968 46 H 0.031 0.969 47 H 0.208 0.792 48 H 0.061 0.939 49 H 0.087 0.913 50 H 0.072 0.928 51 H 0.074 0.926 52 H 0.051 0.949 53 H 0.105 0.895 54 H 0.064 0.936 55 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -14.883 27.589 12.364 33.697 hybrid contribution 0.231 -1.757 -0.124 1.777 sum -14.652 25.831 12.240 32.121 Atomic orbital electron populations 1.23954 0.94828 1.02929 0.99717 1.22209 0.95700 0.96064 1.01564 1.20763 1.00114 0.93143 1.02895 1.20803 0.90593 0.94365 0.86164 0.92742 1.21806 1.01767 0.93578 0.98895 1.20830 0.77871 0.89709 0.79784 1.90690 1.62972 1.54772 1.37897 1.49162 1.49445 1.17619 1.19500 1.22756 0.95582 0.97214 0.86330 1.22190 0.94734 0.93285 1.01546 0.87962 1.21810 0.99105 0.98482 1.00156 1.22017 0.95935 0.95178 0.97149 0.90826 1.21639 1.01561 0.93070 0.97474 1.20851 0.95948 0.89500 0.91466 1.42587 1.81003 1.09737 1.05612 1.19650 1.36033 0.89438 0.92859 0.91154 1.25577 1.03371 1.02450 0.95393 1.69809 1.56224 1.35783 0.99974 0.85071 0.77163 0.79842 0.77675 1.19411 1.21764 1.21667 1.22355 0.92568 0.86609 0.99788 1.87867 1.39376 1.83317 1.19928 1.22458 0.96989 0.96700 0.85285 1.21711 0.98629 1.02791 0.97103 0.88577 0.86323 0.90018 0.91181 0.92261 0.86314 0.85082 0.87350 0.89420 0.92706 0.90175 0.93740 0.91130 0.91417 0.96847 0.96906 0.79234 0.93864 0.91335 0.92770 0.92556 0.94890 0.89519 0.93638 0.91410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.01 13.91 67.78 0.94 -1.07 16 2 C -0.15 -2.10 5.05 -16.49 -0.08 -2.18 16 3 C -0.11 -1.19 9.73 71.24 0.69 -0.50 16 4 C 0.14 2.62 1.87 29.85 0.06 2.67 16 5 H 0.05 1.19 7.25 -2.39 -0.02 1.17 16 6 C -0.12 -1.98 4.23 29.85 0.13 -1.85 16 7 C 0.53 13.41 7.79 87.66 0.68 14.09 16 8 O -0.58 -20.36 15.69 10.71 0.17 -20.19 16 9 N -0.62 -14.22 3.32 -807.50 -2.68 -16.90 16 10 C 0.10 1.50 6.47 86.54 0.56 2.05 16 11 C -0.10 -1.66 3.30 -9.88 -0.03 -1.69 16 12 H 0.10 1.55 7.71 -2.39 -0.02 1.53 16 13 C -0.14 -2.05 8.91 71.98 0.64 -1.41 16 14 C -0.08 -2.03 2.73 -9.89 -0.03 -2.06 16 15 H 0.07 1.94 7.71 -2.39 -0.02 1.93 16 16 C -0.10 -3.02 4.51 30.59 0.14 -2.88 16 17 C 0.15 6.14 6.12 86.38 0.53 6.67 16 18 N -0.75 -39.23 5.60 -343.45 -1.92 -41.16 16 19 C -0.25 -14.41 9.99 84.03 0.84 -13.57 16 20 H 0.07 3.99 7.83 -2.91 -0.02 3.97 16 21 C -0.08 -4.46 5.50 84.86 0.47 -3.99 16 22 N -0.97 -59.93 13.06 21.65 0.28 -59.64 16 23 Si 0.97 47.29 29.55 68.60 2.03 49.32 16 24 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 25 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 26 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 27 C 0.11 3.02 5.80 86.50 0.50 3.52 16 28 O -0.39 -8.96 8.76 -135.21 -1.18 -10.14 16 29 C 0.06 1.29 6.46 71.98 0.46 1.76 16 30 C -0.15 -2.61 10.28 71.98 0.74 -1.87 16 31 H 0.10 1.11 7.84 -2.91 -0.02 1.09 16 32 H 0.12 0.95 8.04 -2.91 -0.02 0.93 16 33 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 34 H 0.07 0.61 8.06 -2.39 -0.02 0.59 16 35 H 0.06 0.79 7.72 -2.39 -0.02 0.77 16 36 H 0.12 1.55 7.85 -2.39 -0.02 1.53 16 37 H 0.13 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.11 0.95 7.03 -2.38 -0.02 0.94 16 39 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 40 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 41 H 0.08 0.81 8.14 -2.39 -0.02 0.80 16 42 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 43 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 44 H 0.07 2.04 8.02 -2.39 -0.02 2.02 16 45 H 0.01 0.58 7.53 -2.39 -0.02 0.56 16 46 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 47 H 0.38 20.54 7.67 -92.71 -0.71 19.83 16 48 H 0.25 15.04 8.31 -92.71 -0.77 14.27 16 49 H 0.07 1.96 7.78 -2.39 -0.02 1.94 16 50 H 0.05 1.78 7.89 -2.39 -0.02 1.76 16 51 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 52 H 0.03 0.79 8.09 -2.38 -0.02 0.77 16 53 H 0.09 1.19 8.14 -2.38 -0.02 1.17 16 54 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 55 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 Total: -1.00 -75.47 439.95 4.04 -71.42 By element: Atomic # 1 Polarization: 29.49 SS G_CDS: 0.12 Total: 29.60 kcal Atomic # 6 Polarization: -9.54 SS G_CDS: 7.24 Total: -2.30 kcal Atomic # 7 Polarization: -113.38 SS G_CDS: -4.32 Total: -117.70 kcal Atomic # 8 Polarization: -29.32 SS G_CDS: -1.02 Total: -30.34 kcal Atomic # 14 Polarization: 47.29 SS G_CDS: 2.03 Total: 49.32 kcal Total: -75.47 4.04 -71.42 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001104255379.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.331 kcal (2) G-P(sol) polarization free energy of solvation -75.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds