Wall clock time and date at job start Tue Mar 31 2020 22:01:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50701 * 120.00065 * 2 1 4 4 C 1.50702 * 119.99682 * 180.02562 * 2 1 3 5 5 H 1.08996 * 109.47392 * 4.99437 * 4 2 1 6 6 C 1.52999 * 109.46850 * 244.99515 * 4 2 1 7 7 C 1.50703 * 109.47169 * 175.00115 * 6 4 2 8 8 O 1.21285 * 119.99797 * 0.02562 * 7 6 4 9 9 N 1.34771 * 120.00031 * 180.02562 * 7 6 4 10 10 C 1.47427 * 125.65091 * 359.96030 * 9 7 6 11 11 C 1.55129 * 104.94253 * 204.03880 * 10 9 7 12 12 H 1.08997 * 110.93618 * 81.21160 * 11 10 9 13 13 C 1.53001 * 111.15937 * 205.12947 * 11 10 9 14 14 C 1.55158 * 101.48405 * 323.22206 * 11 10 9 15 15 H 1.09003 * 110.71634 * 276.82942 * 14 11 10 16 16 C 1.52997 * 110.71932 * 153.73789 * 14 11 10 17 17 C 1.53000 * 109.47297 * 177.44072 * 16 14 11 18 18 N 1.46499 * 109.47100 * 179.97438 * 17 16 14 19 19 C 1.36939 * 119.99547 * 179.97438 * 18 17 16 20 20 H 1.07993 * 120.00716 * 359.97438 * 19 18 17 21 21 C 1.38817 * 119.99459 * 179.97438 * 19 18 17 22 22 N 1.31619 * 120.00154 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 119.99635 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.47297 * 269.99668 * 23 21 19 25 25 H 1.48503 * 109.47261 * 149.99848 * 23 21 19 26 26 H 1.48500 * 109.47454 * 29.99841 * 23 21 19 27 27 C 1.47027 * 125.64763 * 180.02562 * 9 7 6 28 28 O 1.42896 * 109.47156 * 124.99838 * 4 2 1 29 29 C 1.42901 * 114.00182 * 269.99563 * 28 4 2 30 30 C 1.52999 * 109.47399 * 179.97438 * 29 28 4 31 31 H 1.08005 * 120.00120 * 180.02562 * 1 2 3 32 32 H 1.07997 * 119.99370 * 359.97438 * 1 2 3 33 33 H 1.08997 * 109.46792 * 270.00401 * 3 2 1 34 34 H 1.08995 * 109.47180 * 30.00717 * 3 2 1 35 35 H 1.09002 * 109.46565 * 150.00478 * 3 2 1 36 36 H 1.09001 * 109.47422 * 55.00488 * 6 4 2 37 37 H 1.09001 * 109.47403 * 294.99819 * 6 4 2 38 38 H 1.08998 * 110.36007 * 323.00021 * 10 9 7 39 39 H 1.08994 * 110.36808 * 85.32270 * 10 9 7 40 40 H 1.09005 * 109.46546 * 172.16742 * 13 11 10 41 41 H 1.08995 * 109.47240 * 292.16829 * 13 11 10 42 42 H 1.08995 * 109.47329 * 52.17305 * 13 11 10 43 43 H 1.08996 * 109.47714 * 57.43462 * 16 14 11 44 44 H 1.08999 * 109.47049 * 297.43546 * 16 14 11 45 45 H 1.08994 * 109.47445 * 59.99594 * 17 16 14 46 46 H 1.08999 * 109.46641 * 299.99724 * 17 16 14 47 47 H 0.96998 * 120.00185 * 359.97438 * 18 17 16 48 48 H 0.96993 * 120.00007 * 0.02562 * 22 21 19 49 49 H 1.08996 * 109.88093 * 59.48536 * 27 9 7 50 50 H 1.09008 * 109.88306 * 298.32004 * 27 9 7 51 51 H 1.09000 * 109.47161 * 300.00195 * 29 28 4 52 52 H 1.09004 * 109.46723 * 60.00432 * 29 28 4 53 53 H 1.08999 * 109.46945 * 179.97438 * 30 29 28 54 54 H 1.09000 * 109.47520 * 300.00461 * 30 29 28 55 55 H 1.09004 * 109.46434 * 60.00741 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 2.0635 -1.3052 -0.0006 5 1 1.3586 -2.1316 -0.0904 6 6 2.8465 -1.4425 1.3067 7 6 3.5009 -2.7990 1.3601 8 8 3.3557 -3.5789 0.4427 9 7 4.2475 -3.1455 2.4273 10 6 4.5066 -2.2987 3.6060 11 6 5.8336 -2.8377 4.2018 12 1 6.6929 -2.4380 3.6634 13 6 5.9336 -2.5285 5.6969 14 6 5.6848 -4.3628 3.9579 15 1 5.0933 -4.8238 4.7489 16 6 7.0573 -5.0305 3.8519 17 6 6.8781 -6.5397 3.6758 18 7 8.1923 -7.1789 3.5737 19 6 8.2829 -8.5356 3.4109 20 1 7.3857 -9.1343 3.3582 21 6 9.5282 -9.1412 3.3136 22 7 10.6217 -8.4114 3.3773 23 14 9.6519 -10.9919 3.0923 24 1 9.7135 -11.6467 4.4238 25 1 10.8800 -11.3175 2.3234 26 1 8.4608 -11.4829 2.3538 27 6 4.9395 -4.4300 2.6083 28 8 2.9708 -1.3309 -1.1042 29 6 2.4138 -1.8757 -2.3021 30 6 3.4678 -1.8531 -3.4109 31 1 -0.5400 -0.9353 0.0004 32 1 -0.5399 0.9353 0.0004 33 1 2.2451 1.6197 -1.0277 34 1 1.4746 2.0647 0.5139 35 1 3.0160 1.1746 0.5138 36 1 2.1658 -1.3341 2.1511 37 1 3.6118 -0.6678 1.3550 38 1 4.6195 -1.2567 3.3070 39 1 3.6994 -2.4008 4.3313 40 1 6.8029 -3.0359 6.1154 41 1 6.0371 -1.4529 5.8394 42 1 5.0321 -2.8767 6.2010 43 1 7.6273 -4.8358 4.7604 44 1 7.5929 -4.6256 2.9933 45 1 6.3082 -6.7343 2.7673 46 1 6.3424 -6.9445 4.5344 47 1 8.9982 -6.6412 3.6214 48 1 10.5575 -7.4505 3.4926 49 1 5.6523 -4.5843 1.7983 50 1 4.2135 -5.2429 2.6260 51 1 2.0980 -2.9032 -2.1213 52 1 1.5537 -1.2794 -2.6067 53 1 3.0430 -2.2692 -4.3245 54 1 3.7832 -0.8256 -3.5916 55 1 4.3281 -2.4492 -3.1065 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001104255380.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:01:37 Heat of formation + Delta-G solvation = -92.377509 kcal Electronic energy + Delta-G solvation = -30014.186552 eV Core-core repulsion = 26050.363077 eV Total energy + Delta-G solvation = -3963.823475 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.40203 -39.92075 -38.76653 -37.16838 -36.14230 -34.83044 -33.50004 -32.72744 -31.79225 -31.02568 -28.50011 -28.19929 -27.30934 -26.00797 -24.83696 -23.94362 -23.71423 -22.09557 -21.12345 -20.28668 -19.82500 -19.41159 -18.06603 -17.84785 -17.42705 -16.75087 -16.66427 -16.55529 -15.91901 -15.89326 -15.53314 -15.29638 -15.04502 -14.95403 -14.75310 -14.53003 -14.38079 -14.02349 -13.78582 -13.68385 -13.46848 -13.29028 -13.22572 -12.89312 -12.87267 -12.77645 -12.74137 -12.64258 -12.48131 -12.47120 -12.30696 -12.02513 -11.91677 -11.84713 -11.72657 -11.71465 -11.48368 -11.13490 -10.96583 -10.93874 -10.50934 -10.11235 -9.71979 -9.16575 -8.45732 -5.39329 1.16823 1.55171 1.59391 1.66608 1.81136 1.92823 2.67592 2.74652 3.28872 3.34774 3.46632 3.53532 3.62859 3.86078 3.87777 3.95774 4.06283 4.14889 4.17932 4.22546 4.29129 4.34019 4.34849 4.41693 4.43979 4.48111 4.54652 4.58900 4.63029 4.67463 4.72025 4.75608 4.82511 4.82916 4.88299 4.91421 4.96662 4.97747 5.03056 5.11826 5.17356 5.18539 5.18911 5.19890 5.25268 5.35382 5.49696 5.53187 5.62124 5.79417 6.29774 6.44928 6.49505 7.04908 7.11710 7.95188 8.05645 9.06617 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.013378 B = 0.002193 C = 0.001968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2092.426385 B =12767.397004 C =14224.712099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.156 4.156 3 C -0.110 4.110 4 C 0.138 3.862 5 H 0.056 0.944 6 C -0.121 4.121 7 C 0.520 3.480 8 O -0.583 6.583 9 N -0.621 5.621 10 C 0.102 3.898 11 C -0.094 4.094 12 H 0.080 0.920 13 C -0.136 4.136 14 C -0.079 4.079 15 H 0.097 0.903 16 C -0.100 4.100 17 C 0.155 3.845 18 N -0.760 5.760 19 C -0.339 4.339 20 H 0.063 0.937 21 C -0.106 4.106 22 N -0.973 5.973 23 Si 1.132 2.868 24 H -0.280 1.280 25 H -0.290 1.290 26 H -0.276 1.276 27 C 0.114 3.886 28 O -0.387 6.387 29 C 0.063 3.937 30 C -0.146 4.146 31 H 0.097 0.903 32 H 0.120 0.880 33 H 0.062 0.938 34 H 0.078 0.922 35 H 0.064 0.936 36 H 0.135 0.865 37 H 0.119 0.881 38 H 0.103 0.897 39 H 0.094 0.906 40 H 0.053 0.947 41 H 0.078 0.922 42 H 0.068 0.932 43 H 0.075 0.925 44 H 0.052 0.948 45 H 0.008 0.992 46 H 0.022 0.978 47 H 0.361 0.639 48 H 0.244 0.756 49 H 0.039 0.961 50 H 0.052 0.948 51 H 0.033 0.967 52 H 0.058 0.942 53 H 0.087 0.913 54 H 0.067 0.933 55 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.586 25.495 -1.542 34.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.157 4.157 3 C -0.166 4.166 4 C 0.080 3.920 5 H 0.074 0.926 6 C -0.160 4.160 7 C 0.310 3.690 8 O -0.462 6.462 9 N -0.354 5.354 10 C -0.019 4.019 11 C -0.113 4.113 12 H 0.099 0.901 13 C -0.193 4.193 14 C -0.099 4.099 15 H 0.116 0.884 16 C -0.138 4.138 17 C 0.029 3.971 18 N -0.405 5.405 19 C -0.471 4.471 20 H 0.081 0.919 21 C -0.297 4.297 22 N -0.621 5.621 23 Si 0.956 3.044 24 H -0.206 1.206 25 H -0.216 1.216 26 H -0.202 1.202 27 C -0.009 4.009 28 O -0.307 6.307 29 C -0.014 4.014 30 C -0.203 4.203 31 H 0.115 0.885 32 H 0.138 0.862 33 H 0.081 0.919 34 H 0.097 0.903 35 H 0.083 0.917 36 H 0.153 0.847 37 H 0.137 0.863 38 H 0.121 0.879 39 H 0.112 0.888 40 H 0.072 0.928 41 H 0.097 0.903 42 H 0.087 0.913 43 H 0.093 0.907 44 H 0.071 0.929 45 H 0.026 0.974 46 H 0.040 0.960 47 H 0.193 0.807 48 H 0.055 0.945 49 H 0.058 0.942 50 H 0.071 0.929 51 H 0.051 0.949 52 H 0.076 0.924 53 H 0.106 0.894 54 H 0.086 0.914 55 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -21.721 23.780 -2.271 32.287 hybrid contribution -0.699 0.703 -0.181 1.008 sum -22.420 24.483 -2.452 33.288 Atomic orbital electron populations 1.23962 0.94735 1.03014 0.99428 1.22195 0.95740 0.95940 1.01777 1.20744 1.00232 0.93397 1.02239 1.20836 0.90597 0.94475 0.86132 0.92628 1.21834 1.01823 0.93304 0.99059 1.20955 0.78145 0.89907 0.79979 1.90696 1.62945 1.54773 1.37830 1.48645 1.49666 1.17091 1.20013 1.22749 0.97445 0.95480 0.86243 1.22443 0.97579 0.92721 0.98589 0.90149 1.21675 1.02654 1.02819 0.92168 1.22167 0.94970 0.97117 0.95601 0.88432 1.21575 0.96967 0.93334 1.01952 1.20782 0.86638 0.92603 0.97072 1.42625 1.03574 1.04777 1.89510 1.20425 0.94985 0.85491 1.46153 0.91874 1.27320 0.90966 1.10907 1.00460 1.70958 1.29320 1.06284 1.55506 0.82580 0.75570 0.69266 0.76995 1.20615 1.21638 1.20152 1.21892 0.95146 0.86198 0.97707 1.87873 1.39503 1.83348 1.19991 1.22453 0.96962 0.96719 0.85243 1.21719 0.98627 1.02778 0.97205 0.88473 0.86217 0.91942 0.90319 0.91674 0.84722 0.86345 0.87915 0.88773 0.92781 0.90300 0.91268 0.90690 0.92917 0.97389 0.96020 0.80663 0.94518 0.94209 0.92932 0.94905 0.92362 0.89440 0.91368 0.93885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.95 13.91 67.78 0.94 -1.00 16 2 C -0.16 -2.14 5.05 -16.49 -0.08 -2.22 16 3 C -0.11 -1.21 9.84 71.24 0.70 -0.51 16 4 C 0.14 2.66 1.86 29.85 0.06 2.71 16 5 H 0.06 1.23 7.25 -2.39 -0.02 1.21 16 6 C -0.12 -2.01 4.22 29.85 0.13 -1.89 16 7 C 0.52 13.63 7.73 87.66 0.68 14.31 16 8 O -0.58 -21.09 15.75 10.75 0.17 -20.92 16 9 N -0.62 -14.55 3.33 -811.35 -2.70 -17.25 16 10 C 0.10 1.43 6.18 86.93 0.54 1.97 16 11 C -0.09 -1.59 3.10 -9.32 -0.03 -1.61 16 12 H 0.08 1.49 8.05 -2.39 -0.02 1.47 16 13 C -0.14 -1.71 9.31 71.98 0.67 -1.04 16 14 C -0.08 -1.89 2.42 -9.61 -0.02 -1.92 16 15 H 0.10 2.16 8.04 -2.39 -0.02 2.14 16 16 C -0.10 -3.18 4.72 30.59 0.14 -3.04 16 17 C 0.16 6.59 6.13 86.38 0.53 7.12 16 18 N -0.76 -40.87 5.60 -343.46 -1.92 -42.79 16 19 C -0.34 -20.24 9.99 84.03 0.84 -19.40 16 20 H 0.06 3.70 7.83 -2.91 -0.02 3.68 16 21 C -0.11 -6.38 5.50 84.86 0.47 -5.92 16 22 N -0.97 -62.76 13.70 21.65 0.30 -62.46 16 23 Si 1.13 53.89 29.92 68.60 2.05 55.94 16 24 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 25 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 26 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 27 C 0.11 3.27 5.73 86.73 0.50 3.77 16 28 O -0.39 -9.46 9.07 -135.18 -1.23 -10.68 16 29 C 0.06 1.37 6.46 71.98 0.46 1.84 16 30 C -0.15 -2.86 10.28 71.98 0.74 -2.11 16 31 H 0.10 1.09 7.84 -2.91 -0.02 1.07 16 32 H 0.12 0.92 8.04 -2.91 -0.02 0.90 16 33 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.08 0.58 8.06 -2.39 -0.02 0.56 16 35 H 0.06 0.71 7.02 -2.39 -0.02 0.69 16 36 H 0.13 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.12 1.60 6.90 -2.39 -0.02 1.59 16 38 H 0.10 0.94 7.48 -2.39 -0.02 0.92 16 39 H 0.09 0.95 7.98 -2.39 -0.02 0.93 16 40 H 0.05 0.83 8.14 -2.38 -0.02 0.81 16 41 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 42 H 0.07 0.75 8.08 -2.39 -0.02 0.73 16 43 H 0.07 2.28 8.14 -2.39 -0.02 2.27 16 44 H 0.05 1.79 8.00 -2.39 -0.02 1.77 16 45 H 0.01 0.36 7.58 -2.39 -0.02 0.35 16 46 H 0.02 0.91 8.14 -2.39 -0.02 0.90 16 47 H 0.36 19.81 6.50 -92.71 -0.60 19.20 16 48 H 0.24 15.68 6.77 -92.71 -0.63 15.05 16 49 H 0.04 1.39 7.73 -2.39 -0.02 1.37 16 50 H 0.05 1.64 8.14 -2.38 -0.02 1.62 16 51 H 0.03 0.82 8.08 -2.39 -0.02 0.81 16 52 H 0.06 1.04 8.14 -2.38 -0.02 1.02 16 53 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 54 H 0.07 1.19 8.14 -2.39 -0.02 1.18 16 55 H 0.04 1.01 8.14 -2.38 -0.02 1.00 16 Total: -1.00 -80.51 437.89 4.29 -76.22 By element: Atomic # 1 Polarization: 30.51 SS G_CDS: 0.37 Total: 30.88 kcal Atomic # 6 Polarization: -16.19 SS G_CDS: 7.26 Total: -8.94 kcal Atomic # 7 Polarization: -118.17 SS G_CDS: -4.33 Total: -122.50 kcal Atomic # 8 Polarization: -30.54 SS G_CDS: -1.06 Total: -31.60 kcal Atomic # 14 Polarization: 53.89 SS G_CDS: 2.05 Total: 55.94 kcal Total: -80.51 4.29 -76.22 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001104255380.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.159 kcal (2) G-P(sol) polarization free energy of solvation -80.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds