Wall clock time and date at job start Tue Mar 31 2020 21:58:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42903 * 109.46836 * 2 1 4 4 C 1.42901 * 113.99379 * 180.02562 * 3 2 1 5 5 H 1.08989 * 109.47604 * 30.00226 * 4 3 2 6 6 C 1.53004 * 109.47023 * 269.99641 * 4 3 2 7 7 C 1.50705 * 109.46823 * 150.00338 * 4 3 2 8 8 O 1.21287 * 119.99844 * 4.99315 * 7 4 3 9 9 N 1.34768 * 119.99895 * 184.72537 * 7 4 3 10 10 C 1.46924 * 120.63432 * 355.98352 * 9 7 4 11 11 C 1.53188 * 108.77598 * 126.37200 * 10 9 7 12 12 C 1.53035 * 109.31322 * 54.63890 * 11 10 9 13 13 C 1.53036 * 109.53755 * 298.63200 * 12 11 10 14 14 C 1.46932 * 120.63280 * 175.70876 * 9 7 4 15 15 H 1.08999 * 109.58906 * 113.83709 * 14 9 7 16 16 C 1.53000 * 109.58367 * 353.41526 * 14 9 7 17 17 C 1.52999 * 112.84968 * 299.63413 * 16 14 9 18 18 N 1.46503 * 109.46906 * 291.85570 * 17 16 14 19 19 C 1.36943 * 119.99444 * 174.16085 * 18 17 16 20 20 H 1.07989 * 120.00149 * 0.02562 * 19 18 17 21 21 C 1.38809 * 119.99461 * 180.02562 * 19 18 17 22 22 N 1.31628 * 120.00317 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 120.00020 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.46989 * 60.00064 * 23 21 19 25 25 H 1.48507 * 109.47083 * 180.02562 * 23 21 19 26 26 H 1.48504 * 109.46900 * 300.00197 * 23 21 19 27 27 C 1.53779 * 113.61368 * 168.32661 * 16 14 9 28 28 C 1.53789 * 87.08169 * 220.01877 * 27 16 14 29 29 C 1.53787 * 87.08070 * 25.43363 * 28 27 16 30 30 H 1.08995 * 109.47499 * 300.00107 * 1 2 3 31 31 H 1.09001 * 109.47409 * 60.00371 * 1 2 3 32 32 H 1.09005 * 109.47027 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.46791 * 239.99952 * 2 1 3 34 34 H 1.08992 * 109.46939 * 120.00007 * 2 1 3 35 35 H 1.08998 * 109.47132 * 60.00429 * 6 4 3 36 36 H 1.09000 * 109.47177 * 180.02562 * 6 4 3 37 37 H 1.08999 * 109.46875 * 300.00728 * 6 4 3 38 38 H 1.09001 * 109.59297 * 246.16352 * 10 9 7 39 39 H 1.09004 * 109.58435 * 6.58692 * 10 9 7 40 40 H 1.09003 * 109.49645 * 174.59246 * 11 10 9 41 41 H 1.09000 * 109.49660 * 294.65107 * 11 10 9 42 42 H 1.09003 * 109.46289 * 58.65638 * 12 11 10 43 43 H 1.09002 * 109.46092 * 178.62714 * 12 11 10 44 44 H 1.09002 * 109.49546 * 181.31324 * 13 12 11 45 45 H 1.08992 * 109.50177 * 301.37949 * 13 12 11 46 46 H 1.09003 * 109.47248 * 51.85926 * 17 16 14 47 47 H 1.09000 * 109.46873 * 171.85800 * 17 16 14 48 48 H 0.96993 * 119.99884 * 354.16655 * 18 17 16 49 49 H 0.96996 * 120.00166 * 179.97438 * 22 21 19 50 50 H 1.08997 * 113.61837 * 334.56436 * 27 16 14 51 51 H 1.08996 * 113.61909 * 105.47351 * 27 16 14 52 52 H 1.08991 * 113.61495 * 270.88413 * 28 27 16 53 53 H 1.09004 * 113.61159 * 139.97699 * 28 27 16 54 54 H 1.08997 * 113.61540 * 220.02188 * 29 28 27 55 55 H 1.08995 * 113.68876 * 89.12547 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4601 -0.0006 5 1 3.8631 0.6018 -0.5147 6 6 3.9398 1.5002 1.4418 7 6 3.8341 2.7265 -0.7109 8 8 2.9855 3.5050 -1.0915 9 7 5.1381 2.9967 -0.9185 10 6 6.1807 2.1114 -0.3820 11 6 7.1097 1.6937 -1.5262 12 6 7.6462 2.9450 -2.2250 13 6 6.4802 3.7410 -2.8157 14 6 5.5440 4.1789 -1.6909 15 1 6.0640 4.8806 -1.0387 16 6 4.3062 4.8507 -2.2887 17 6 3.5292 3.9315 -3.2333 18 7 4.3263 3.6818 -4.4369 19 6 3.8861 2.7880 -5.3764 20 1 2.9512 2.2676 -5.2303 21 6 4.6416 2.5510 -6.5165 22 7 5.7814 3.1849 -6.6943 23 14 4.0409 1.3323 -7.7984 24 1 2.7256 1.7765 -8.3256 25 1 5.0219 1.2603 -8.9110 26 1 3.8978 -0.0091 -7.1775 27 6 4.5843 6.2454 -2.8738 28 6 3.2366 6.6796 -2.2735 29 6 3.4208 5.5515 -1.2447 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 3.6481 0.5843 1.9556 36 1 5.0264 1.5866 1.4413 37 1 3.5075 2.3586 1.9558 38 1 6.7537 2.6410 0.3792 39 1 5.7189 1.2262 0.0554 40 1 7.9423 1.1152 -1.1260 41 1 6.5553 1.0863 -2.2416 42 1 8.1795 3.5636 -1.5032 43 1 8.3267 2.6511 -3.0242 44 1 6.8649 4.6198 -3.3333 45 1 5.9320 3.1151 -3.5197 46 1 3.3224 2.9861 -2.7318 47 1 2.5894 4.4080 -3.5124 48 1 5.1659 4.1495 -4.5682 49 1 6.3095 3.0190 -7.4908 50 1 5.4432 6.7440 -2.4246 51 1 4.6037 6.2659 -3.9634 52 1 2.3906 6.5259 -2.9432 53 1 3.2551 7.6775 -1.8352 54 1 2.5011 5.0118 -1.0192 55 1 3.9614 5.8591 -0.3496 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001105509077.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:58:22 Heat of formation + Delta-G solvation = 4.977836 kcal Electronic energy + Delta-G solvation = -33748.017915 eV Core-core repulsion = 29788.416085 eV Total energy + Delta-G solvation = -3959.601830 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.50967 -39.85941 -38.54901 -38.05797 -36.11248 -34.28744 -33.11184 -32.85969 -31.88781 -30.70014 -28.36931 -27.07127 -26.53305 -25.47979 -24.60488 -23.90055 -23.60195 -22.92575 -21.68141 -20.32133 -19.49308 -18.60456 -18.16729 -17.68224 -17.28740 -16.69005 -16.55365 -16.44582 -16.05787 -15.74503 -15.42434 -15.10800 -15.09521 -14.74944 -14.52040 -14.24543 -14.04375 -13.95694 -13.79837 -13.48860 -13.21502 -13.12393 -13.09107 -12.89643 -12.85318 -12.76303 -12.74720 -12.42570 -12.30249 -12.22317 -12.00355 -11.92831 -11.86656 -11.79051 -11.41766 -11.18348 -11.06129 -10.88685 -10.71286 -10.68678 -10.46443 -9.68334 -9.27544 -8.74260 -7.91777 -5.16012 1.41993 1.44836 1.51126 1.75083 1.93593 2.55862 2.90188 3.39624 3.54195 3.76709 3.81779 3.90191 3.93616 4.03670 4.06453 4.11845 4.14451 4.18941 4.22396 4.31221 4.35222 4.39733 4.47768 4.52602 4.55753 4.63710 4.65317 4.73771 4.84070 4.86624 4.88634 4.90256 4.92810 4.99683 5.02395 5.06982 5.12676 5.15502 5.23754 5.25438 5.27419 5.33294 5.40659 5.41869 5.45375 5.52763 5.64171 5.75185 5.86783 5.93073 6.21046 6.31612 6.65208 7.37997 7.57582 8.17482 8.46367 9.30640 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.008636 B = 0.005227 C = 0.004550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3241.338796 B = 5355.170759 C = 6152.874946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.049 3.951 3 O -0.387 6.387 4 C 0.071 3.929 5 H 0.087 0.913 6 C -0.169 4.169 7 C 0.479 3.521 8 O -0.511 6.511 9 N -0.596 5.596 10 C 0.098 3.902 11 C -0.131 4.131 12 C -0.110 4.110 13 C -0.159 4.159 14 C 0.178 3.822 15 H 0.083 0.917 16 C -0.061 4.061 17 C 0.193 3.807 18 N -0.734 5.734 19 C -0.243 4.243 20 H 0.056 0.944 21 C -0.065 4.065 22 N -0.960 5.960 23 Si 0.964 3.036 24 H -0.286 1.286 25 H -0.290 1.290 26 H -0.280 1.280 27 C -0.136 4.136 28 C -0.144 4.144 29 C -0.094 4.094 30 H 0.064 0.936 31 H 0.043 0.957 32 H 0.094 0.906 33 H 0.043 0.957 34 H 0.074 0.926 35 H 0.084 0.916 36 H 0.100 0.900 37 H 0.059 0.941 38 H 0.099 0.901 39 H 0.108 0.892 40 H 0.102 0.898 41 H 0.038 0.962 42 H 0.078 0.922 43 H 0.048 0.952 44 H 0.048 0.952 45 H 0.086 0.914 46 H 0.038 0.962 47 H -0.023 1.023 48 H 0.382 0.618 49 H 0.250 0.750 50 H 0.094 0.906 51 H 0.037 0.963 52 H 0.052 0.948 53 H 0.079 0.921 54 H 0.095 0.905 55 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.570 -4.552 21.597 22.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.027 4.027 3 O -0.306 6.306 4 C 0.010 3.990 5 H 0.105 0.895 6 C -0.226 4.226 7 C 0.268 3.732 8 O -0.390 6.390 9 N -0.330 5.330 10 C -0.023 4.023 11 C -0.169 4.169 12 C -0.148 4.148 13 C -0.198 4.198 14 C 0.075 3.925 15 H 0.100 0.900 16 C -0.062 4.062 17 C 0.068 3.932 18 N -0.380 5.380 19 C -0.375 4.375 20 H 0.074 0.926 21 C -0.258 4.258 22 N -0.611 5.611 23 Si 0.793 3.207 24 H -0.213 1.213 25 H -0.216 1.216 26 H -0.206 1.206 27 C -0.174 4.174 28 C -0.181 4.181 29 C -0.131 4.131 30 H 0.083 0.917 31 H 0.062 0.938 32 H 0.113 0.887 33 H 0.061 0.939 34 H 0.092 0.908 35 H 0.103 0.897 36 H 0.118 0.882 37 H 0.078 0.922 38 H 0.117 0.883 39 H 0.126 0.874 40 H 0.120 0.880 41 H 0.057 0.943 42 H 0.097 0.903 43 H 0.067 0.933 44 H 0.067 0.933 45 H 0.104 0.896 46 H 0.056 0.944 47 H -0.005 1.005 48 H 0.219 0.781 49 H 0.059 0.941 50 H 0.113 0.887 51 H 0.056 0.944 52 H 0.071 0.929 53 H 0.098 0.902 54 H 0.112 0.888 55 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 0.872 -4.114 21.336 21.747 hybrid contribution -0.011 -0.513 -1.821 1.892 sum 0.862 -4.627 19.516 20.075 Atomic orbital electron populations 1.21741 0.93105 1.03327 1.02346 1.22752 0.96360 0.82720 1.00865 1.88000 1.19546 1.27941 1.95156 1.21990 0.83100 0.95816 0.98143 0.89523 1.22439 1.03225 1.03998 0.92924 1.20899 0.83353 0.87834 0.81068 1.90882 1.52398 1.45767 1.49923 1.47901 1.05152 1.26589 1.53407 1.22278 0.89261 0.94726 0.96032 1.21901 0.99833 0.97545 0.97664 1.21424 0.96724 0.96981 0.99635 1.22401 0.97470 1.01149 0.98737 1.20967 0.93881 0.86014 0.91593 0.89962 1.21926 0.94784 0.93121 0.96366 1.20888 0.90943 0.96404 0.85009 1.43145 1.24974 1.49425 1.20452 1.19441 1.03141 1.15664 0.99260 0.92627 1.25346 0.97635 1.02578 1.00247 1.69789 1.15129 1.47063 1.29075 0.85367 0.76951 0.79307 0.79067 1.21275 1.21600 1.20646 1.22995 0.98467 0.96820 0.99162 1.22858 0.96465 0.99533 0.99285 1.23324 1.01381 0.93209 0.95217 0.91673 0.93795 0.88748 0.93891 0.90755 0.89685 0.88193 0.92196 0.88332 0.87416 0.88010 0.94327 0.90307 0.93346 0.93281 0.89617 0.94431 1.00521 0.78112 0.94076 0.88747 0.94434 0.92898 0.90200 0.88770 0.90513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.91 10.28 71.98 0.74 -2.17 16 2 C 0.05 1.06 6.47 71.98 0.47 1.52 16 3 O -0.39 -11.25 9.53 -129.99 -1.24 -12.49 16 4 C 0.07 1.75 2.32 29.85 0.07 1.82 16 5 H 0.09 1.98 7.28 -2.39 -0.02 1.97 16 6 C -0.17 -2.71 9.06 71.98 0.65 -2.06 16 7 C 0.48 15.18 5.58 87.66 0.49 15.67 16 8 O -0.51 -19.80 7.05 15.94 0.11 -19.69 16 9 N -0.60 -16.71 2.96 -795.82 -2.35 -19.06 16 10 C 0.10 1.88 5.06 86.36 0.44 2.32 16 11 C -0.13 -3.02 6.08 30.67 0.19 -2.84 16 12 C -0.11 -3.06 5.88 30.62 0.18 -2.88 16 13 C -0.16 -5.80 3.89 30.53 0.12 -5.68 16 14 C 0.18 5.72 2.31 44.83 0.10 5.82 16 15 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 16 C -0.06 -2.30 0.08 -51.65 0.00 -2.30 16 17 C 0.19 9.25 4.27 86.38 0.37 9.62 16 18 N -0.73 -39.87 3.42 -343.45 -1.17 -41.04 16 19 C -0.24 -14.51 9.99 84.03 0.84 -13.68 16 20 H 0.06 3.35 7.83 -2.92 -0.02 3.33 16 21 C -0.07 -3.88 5.50 84.86 0.47 -3.41 16 22 N -0.96 -59.21 13.06 21.65 0.28 -58.93 16 23 Si 0.96 48.05 29.55 68.60 2.03 50.08 16 24 H -0.29 -14.09 7.11 99.48 0.71 -13.38 16 25 H -0.29 -14.28 7.11 99.48 0.71 -13.57 16 26 H -0.28 -13.47 7.11 99.48 0.71 -12.77 16 27 C -0.14 -4.93 6.67 31.12 0.21 -4.73 16 28 C -0.14 -4.86 7.73 31.13 0.24 -4.62 16 29 C -0.09 -3.20 5.65 31.13 0.18 -3.03 16 30 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.04 1.04 8.14 -2.39 -0.02 1.03 16 32 H 0.09 1.34 8.14 -2.38 -0.02 1.32 16 33 H 0.04 0.96 8.08 -2.39 -0.02 0.94 16 34 H 0.07 1.15 7.87 -2.39 -0.02 1.14 16 35 H 0.08 1.03 7.87 -2.39 -0.02 1.01 16 36 H 0.10 1.16 5.09 -2.39 -0.01 1.15 16 37 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.11 1.57 4.40 -2.38 -0.01 1.56 16 40 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 41 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 42 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 43 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 44 H 0.05 1.91 7.88 -2.39 -0.02 1.89 16 45 H 0.09 4.07 4.95 -2.39 -0.01 4.06 16 46 H 0.04 1.91 4.77 -5.59 -0.03 1.89 16 47 H -0.02 -1.23 7.33 -2.39 -0.02 -1.25 16 48 H 0.38 21.23 4.80 -92.71 -0.45 20.79 16 49 H 0.25 15.00 8.31 -92.71 -0.77 14.23 16 50 H 0.09 2.88 8.10 -2.39 -0.02 2.86 16 51 H 0.04 1.60 7.58 -2.39 -0.02 1.59 16 52 H 0.05 2.00 7.63 -2.39 -0.02 1.99 16 53 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 54 H 0.09 3.68 5.36 -73.36 -0.39 3.29 16 55 H 0.08 2.26 8.10 -2.39 -0.02 2.24 16 Total: -1.00 -73.88 396.51 3.42 -70.46 By element: Atomic # 1 Polarization: 41.25 SS G_CDS: 0.03 Total: 41.28 kcal Atomic # 6 Polarization: -16.35 SS G_CDS: 5.74 Total: -10.61 kcal Atomic # 7 Polarization: -115.79 SS G_CDS: -3.24 Total: -119.03 kcal Atomic # 8 Polarization: -31.04 SS G_CDS: -1.13 Total: -32.17 kcal Atomic # 14 Polarization: 48.05 SS G_CDS: 2.03 Total: 50.08 kcal Total: -73.88 3.42 -70.46 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105509077.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.434 kcal (2) G-P(sol) polarization free energy of solvation -73.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.456 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds