Wall clock time and date at job start Tue Mar 31 2020 21:58:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42907 * 109.47110 * 2 1 4 4 C 1.42900 * 113.99713 * 180.02562 * 3 2 1 5 5 H 1.08999 * 109.47197 * 329.99377 * 4 3 2 6 6 C 1.53001 * 109.47341 * 89.99352 * 4 3 2 7 7 C 1.50696 * 109.46923 * 209.99600 * 4 3 2 8 8 O 1.21285 * 119.99913 * 354.99954 * 7 4 3 9 9 N 1.34775 * 120.00272 * 174.99915 * 7 4 3 10 10 C 1.46928 * 120.62958 * 5.56396 * 9 7 4 11 11 C 1.53186 * 108.77509 * 233.60913 * 10 9 7 12 12 C 1.53041 * 109.31247 * 305.36075 * 11 10 9 13 13 C 1.53048 * 109.53679 * 61.36557 * 12 11 10 14 14 C 1.46930 * 120.63415 * 185.55902 * 9 7 4 15 15 H 1.08993 * 109.70364 * 246.24874 * 14 9 7 16 16 C 1.53004 * 109.58183 * 6.60639 * 14 9 7 17 17 C 1.53001 * 112.84923 * 61.10213 * 16 14 9 18 18 N 1.46500 * 109.46934 * 175.86613 * 17 16 14 19 19 C 1.36939 * 119.99585 * 180.02562 * 18 17 16 20 20 H 1.07990 * 120.00483 * 0.26865 * 19 18 17 21 21 C 1.38817 * 119.99593 * 179.97438 * 19 18 17 22 22 N 1.31617 * 119.99821 * 179.97438 * 21 19 18 23 23 Si 1.86803 * 119.99981 * 359.97438 * 21 19 18 24 24 H 1.48494 * 109.47019 * 90.00067 * 23 21 19 25 25 H 1.48496 * 109.46848 * 209.99856 * 23 21 19 26 26 H 1.48504 * 109.46954 * 329.99730 * 23 21 19 27 27 C 1.53784 * 113.68659 * 192.36414 * 16 14 9 28 28 C 1.53778 * 87.07857 * 89.13113 * 27 16 14 29 29 C 1.53775 * 113.61800 * 289.89892 * 16 14 9 30 30 H 1.08997 * 109.46762 * 300.00386 * 1 2 3 31 31 H 1.08997 * 109.46854 * 60.00556 * 1 2 3 32 32 H 1.08992 * 109.46931 * 180.02562 * 1 2 3 33 33 H 1.08991 * 109.47159 * 239.99372 * 2 1 3 34 34 H 1.09006 * 109.46996 * 119.99219 * 2 1 3 35 35 H 1.09004 * 109.46486 * 59.99774 * 6 4 3 36 36 H 1.08997 * 109.47230 * 179.97438 * 6 4 3 37 37 H 1.08996 * 109.47372 * 300.00454 * 6 4 3 38 38 H 1.09000 * 109.58681 * 113.81673 * 10 9 7 39 39 H 1.09005 * 109.70120 * 353.46494 * 10 9 7 40 40 H 1.09007 * 109.49689 * 185.41393 * 11 10 9 41 41 H 1.08999 * 109.50284 * 65.31696 * 11 10 9 42 42 H 1.08999 * 109.46346 * 301.34783 * 12 11 10 43 43 H 1.08998 * 109.46117 * 181.38623 * 12 11 10 44 44 H 1.09001 * 109.49697 * 178.68191 * 13 12 11 45 45 H 1.08999 * 109.49401 * 58.58844 * 13 12 11 46 46 H 1.08997 * 109.47445 * 55.85891 * 17 16 14 47 47 H 1.09001 * 109.46622 * 295.85979 * 17 16 14 48 48 H 0.96999 * 120.00334 * 359.97438 * 18 17 16 49 49 H 0.96997 * 119.99868 * 179.97438 * 22 21 19 50 50 H 1.09005 * 113.61221 * 203.67967 * 27 16 14 51 51 H 1.08997 * 113.61229 * 334.57948 * 27 16 14 52 52 H 1.09003 * 113.61055 * 270.88174 * 28 27 16 53 53 H 1.09001 * 113.61558 * 139.98206 * 28 27 16 54 54 H 1.09001 * 113.61267 * 25.35225 * 29 16 14 55 55 H 1.08996 * 113.61443 * 156.25153 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4310 1.4601 -0.0006 5 1 3.8636 0.6016 0.5130 6 6 3.9388 1.5004 -1.4433 7 6 3.8349 2.7263 0.7097 8 8 2.9865 3.5047 1.0911 9 7 5.1387 2.9938 0.9213 10 6 6.1819 2.1243 0.3603 11 6 7.1144 1.6802 1.4916 12 6 7.6502 2.9149 2.2201 13 6 6.4839 3.6936 2.8331 14 6 5.5442 4.1605 1.7171 15 1 6.0614 4.8779 1.0802 16 6 4.3063 4.8181 2.3304 17 6 3.5420 3.8843 3.2711 18 7 2.4336 4.6152 3.8903 19 6 1.6048 3.9800 4.7762 20 1 1.7709 2.9416 5.0218 21 6 0.5548 4.6728 5.3633 22 7 -0.2421 4.0622 6.2145 23 14 0.2729 6.4715 4.9453 24 1 -0.6406 6.5713 3.7789 25 1 -0.3357 7.1610 6.1112 26 1 1.5711 7.1119 4.6137 27 6 4.5779 6.2083 2.9292 28 6 4.2593 6.7827 1.5387 29 6 3.4091 5.5237 1.3000 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.8934 -0.5139 -0.8899 34 1 1.8934 -0.5137 0.8901 35 1 3.5061 2.3590 -1.9568 36 1 5.0254 1.5869 -1.4437 37 1 3.6466 0.5846 -1.9571 38 1 6.7519 2.6739 -0.3887 39 1 5.7227 1.2491 -0.0995 40 1 7.9474 1.1136 1.0751 41 1 6.5630 1.0544 2.1933 42 1 8.1804 3.5524 1.5126 43 1 8.3333 2.6026 3.0099 44 1 6.8680 4.5600 3.3716 45 1 5.9383 3.0489 3.5222 46 1 4.2152 3.5195 4.0469 47 1 3.1491 3.0400 2.7046 48 1 2.2872 5.5492 3.6733 49 1 -0.9755 4.5463 6.6250 50 1 3.8614 6.5006 3.6970 51 1 5.6131 6.3568 3.2363 52 1 5.1291 6.8525 0.8854 53 1 3.6769 7.7035 1.5696 54 1 3.5008 5.1196 0.2918 55 1 2.3732 5.6288 1.6223 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001105509080.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:58:34 Heat of formation + Delta-G solvation = -7.951629 kcal Electronic energy + Delta-G solvation = -33525.259855 eV Core-core repulsion = 29565.097361 eV Total energy + Delta-G solvation = -3960.162494 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.61059 -39.93569 -38.61884 -38.11922 -36.03485 -34.38427 -33.27117 -33.01654 -32.12460 -30.77951 -28.88019 -27.00686 -26.57921 -25.17065 -24.52212 -23.89303 -23.48831 -23.21998 -21.58148 -20.59840 -19.86586 -18.62566 -18.08089 -17.69754 -17.34103 -16.69939 -16.56853 -16.40613 -16.37543 -15.60130 -15.47862 -15.26655 -15.07655 -14.88629 -14.69870 -14.33860 -14.28148 -14.16287 -13.95159 -13.62600 -13.40956 -13.19669 -13.18283 -13.01433 -12.94063 -12.87643 -12.61536 -12.42883 -12.31330 -12.19689 -12.09407 -11.91635 -11.85524 -11.75464 -11.63476 -11.39303 -11.07627 -10.93431 -10.79530 -10.75954 -10.63972 -9.73447 -9.43487 -8.96285 -8.05183 -5.32235 1.26636 1.32076 1.38162 1.74515 1.87669 2.43434 2.87862 3.25779 3.46484 3.66420 3.74165 3.76174 3.88356 3.96404 4.00332 4.04935 4.06182 4.16164 4.17563 4.20347 4.30260 4.31662 4.36156 4.44450 4.50469 4.59209 4.61544 4.70281 4.79997 4.82517 4.87468 4.89501 4.95958 4.98478 5.01120 5.02287 5.07033 5.11609 5.15875 5.21678 5.23757 5.26724 5.29548 5.31621 5.43426 5.53854 5.59900 5.71562 5.72638 5.80231 6.20698 6.21375 6.58813 7.08186 7.44384 7.89933 8.09138 9.17806 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.008981 B = 0.005540 C = 0.004068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3116.922205 B = 5053.061610 C = 6880.503519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.053 3.947 3 O -0.395 6.395 4 C 0.070 3.930 5 H 0.095 0.905 6 C -0.169 4.169 7 C 0.469 3.531 8 O -0.500 6.500 9 N -0.602 5.602 10 C 0.093 3.907 11 C -0.135 4.135 12 C -0.112 4.112 13 C -0.134 4.134 14 C 0.185 3.815 15 H 0.097 0.903 16 C -0.069 4.069 17 C 0.174 3.826 18 N -0.747 5.747 19 C -0.219 4.219 20 H 0.046 0.954 21 C -0.066 4.066 22 N -0.986 5.986 23 Si 0.950 3.050 24 H -0.285 1.285 25 H -0.286 1.286 26 H -0.257 1.257 27 C -0.139 4.139 28 C -0.151 4.151 29 C -0.066 4.066 30 H 0.033 0.967 31 H 0.062 0.938 32 H 0.097 0.903 33 H 0.080 0.920 34 H 0.046 0.954 35 H 0.052 0.948 36 H 0.107 0.893 37 H 0.084 0.916 38 H 0.097 0.903 39 H 0.106 0.894 40 H 0.105 0.895 41 H 0.049 0.951 42 H 0.083 0.917 43 H 0.071 0.929 44 H 0.078 0.922 45 H 0.043 0.957 46 H -0.008 1.008 47 H 0.042 0.958 48 H 0.362 0.638 49 H 0.257 0.743 50 H 0.052 0.948 51 H 0.085 0.915 52 H 0.104 0.896 53 H 0.056 0.944 54 H 0.061 0.939 55 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.045 -6.746 -20.527 30.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.023 4.023 3 O -0.314 6.314 4 C 0.009 3.991 5 H 0.113 0.887 6 C -0.226 4.226 7 C 0.258 3.742 8 O -0.376 6.376 9 N -0.339 5.339 10 C -0.028 4.028 11 C -0.173 4.173 12 C -0.149 4.149 13 C -0.173 4.173 14 C 0.082 3.918 15 H 0.114 0.886 16 C -0.070 4.070 17 C 0.048 3.952 18 N -0.393 5.393 19 C -0.351 4.351 20 H 0.064 0.936 21 C -0.256 4.256 22 N -0.638 5.638 23 Si 0.777 3.223 24 H -0.212 1.212 25 H -0.212 1.212 26 H -0.182 1.182 27 C -0.177 4.177 28 C -0.189 4.189 29 C -0.104 4.104 30 H 0.052 0.948 31 H 0.081 0.919 32 H 0.116 0.884 33 H 0.098 0.902 34 H 0.064 0.936 35 H 0.072 0.928 36 H 0.125 0.875 37 H 0.103 0.897 38 H 0.115 0.885 39 H 0.124 0.876 40 H 0.123 0.877 41 H 0.067 0.933 42 H 0.102 0.898 43 H 0.089 0.911 44 H 0.096 0.904 45 H 0.062 0.938 46 H 0.010 0.990 47 H 0.059 0.941 48 H 0.196 0.804 49 H 0.066 0.934 50 H 0.071 0.929 51 H 0.104 0.896 52 H 0.122 0.878 53 H 0.075 0.925 54 H 0.080 0.920 55 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 20.392 -6.363 -20.223 29.416 hybrid contribution -1.203 0.653 0.846 1.610 sum 19.188 -5.710 -19.377 27.861 Atomic orbital electron populations 1.21761 0.93945 1.03294 1.01883 1.22718 0.95811 0.82653 1.01069 1.88062 1.20110 1.28092 1.95155 1.22029 0.82856 0.95940 0.98254 0.88725 1.22466 1.03465 1.03795 0.92862 1.20837 0.83177 0.88678 0.81545 1.90987 1.52352 1.46681 1.47571 1.47935 1.04882 1.28200 1.52852 1.22357 0.89096 0.94907 0.96443 1.21965 0.99787 0.97888 0.97663 1.21493 0.96220 0.96814 1.00393 1.22012 0.96884 1.01038 0.97336 1.20896 0.92451 0.86538 0.91934 0.88561 1.22062 0.95113 0.93714 0.96122 1.21153 0.87257 0.95025 0.91720 1.42748 1.33960 1.10588 1.52021 1.19013 1.05855 0.95042 1.15153 0.93563 1.25378 0.97964 1.02358 0.99933 1.69872 1.20828 1.37768 1.35304 0.85487 0.78364 0.81351 0.77067 1.21213 1.21249 1.18244 1.22994 1.01605 0.96125 0.96955 1.23200 1.01016 0.97893 0.96761 1.22572 0.96555 0.92957 0.98275 0.94812 0.91895 0.88396 0.90200 0.93555 0.92849 0.87468 0.89707 0.88494 0.87589 0.87710 0.93250 0.89820 0.91071 0.90382 0.93849 0.99024 0.94099 0.80363 0.93449 0.92905 0.89621 0.87809 0.92474 0.92012 0.94476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.76 10.28 71.98 0.74 -3.02 16 2 C 0.05 1.28 6.47 71.98 0.47 1.75 16 3 O -0.39 -12.66 9.53 -129.99 -1.24 -13.89 16 4 C 0.07 1.69 2.32 29.85 0.07 1.76 16 5 H 0.10 1.88 7.34 -2.39 -0.02 1.87 16 6 C -0.17 -2.57 9.06 71.98 0.65 -1.92 16 7 C 0.47 14.23 5.43 87.66 0.48 14.71 16 8 O -0.50 -20.63 7.48 15.95 0.12 -20.51 16 9 N -0.60 -13.53 2.95 -795.03 -2.35 -15.88 16 10 C 0.09 1.11 5.11 86.36 0.44 1.55 16 11 C -0.13 -1.55 6.08 30.67 0.19 -1.37 16 12 C -0.11 -1.51 5.88 30.62 0.18 -1.33 16 13 C -0.13 -2.96 5.04 30.67 0.15 -2.80 16 14 C 0.18 4.53 2.28 44.97 0.10 4.63 16 15 H 0.10 1.92 7.31 -2.39 -0.02 1.91 16 16 C -0.07 -2.41 0.25 -51.65 -0.01 -2.42 16 17 C 0.17 8.06 4.71 86.38 0.41 8.47 16 18 N -0.75 -41.41 4.58 -343.45 -1.57 -42.98 16 19 C -0.22 -14.28 10.47 84.03 0.88 -13.40 16 20 H 0.05 3.29 8.06 -2.92 -0.02 3.27 16 21 C -0.07 -4.30 5.50 84.86 0.47 -3.83 16 22 N -0.99 -68.49 13.97 21.65 0.30 -68.19 16 23 Si 0.95 51.48 27.74 68.60 1.90 53.39 16 24 H -0.29 -15.42 7.11 99.48 0.71 -14.71 16 25 H -0.29 -15.11 7.11 99.48 0.71 -14.40 16 26 H -0.26 -12.92 6.52 99.48 0.65 -12.27 16 27 C -0.14 -4.60 6.83 31.12 0.21 -4.38 16 28 C -0.15 -4.42 7.73 31.12 0.24 -4.18 16 29 C -0.07 -2.43 4.50 31.12 0.14 -2.29 16 30 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 33 H 0.08 1.32 7.87 -2.39 -0.02 1.30 16 34 H 0.05 1.10 8.09 -2.38 -0.02 1.08 16 35 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.11 0.97 5.01 -2.39 -0.01 0.95 16 37 H 0.08 0.98 7.87 -2.39 -0.02 0.96 16 38 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 39 H 0.11 0.93 4.33 -2.38 -0.01 0.92 16 40 H 0.10 0.60 8.14 -2.38 -0.02 0.59 16 41 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 42 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 43 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 44 H 0.08 1.64 7.41 -2.39 -0.02 1.62 16 45 H 0.04 1.25 6.32 -2.39 -0.02 1.24 16 46 H -0.01 -0.38 6.42 -2.39 -0.02 -0.39 16 47 H 0.04 2.10 4.59 -41.10 -0.19 1.91 16 48 H 0.36 19.52 2.85 -92.71 -0.26 19.26 16 49 H 0.26 16.89 8.31 -92.71 -0.77 16.12 16 50 H 0.05 2.15 6.34 -2.38 -0.02 2.13 16 51 H 0.09 2.31 7.35 -2.39 -0.02 2.29 16 52 H 0.10 2.31 7.60 -2.39 -0.02 2.29 16 53 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 54 H 0.06 2.22 6.43 -2.39 -0.02 2.21 16 55 H 0.04 1.71 6.82 -2.39 -0.02 1.69 16 Total: -1.00 -87.59 392.65 3.34 -84.25 By element: Atomic # 1 Polarization: 31.53 SS G_CDS: 0.38 Total: 31.91 kcal Atomic # 6 Polarization: -13.89 SS G_CDS: 5.80 Total: -8.09 kcal Atomic # 7 Polarization: -123.43 SS G_CDS: -3.62 Total: -127.05 kcal Atomic # 8 Polarization: -33.29 SS G_CDS: -1.12 Total: -34.41 kcal Atomic # 14 Polarization: 51.48 SS G_CDS: 1.90 Total: 53.39 kcal Total: -87.59 3.34 -84.25 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105509080.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.298 kcal (2) G-P(sol) polarization free energy of solvation -87.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds