Wall clock time and date at job start Tue Mar 31 2020 22:46:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42897 * 113.99901 * 2 1 4 4 C 1.52998 * 109.47037 * 179.97438 * 3 2 1 5 5 C 1.53000 * 109.47133 * 179.97438 * 4 3 2 6 6 C 1.50694 * 109.47136 * 180.02562 * 5 4 3 7 7 O 1.21285 * 120.00030 * 0.02562 * 6 5 4 8 8 N 1.34779 * 120.00245 * 179.97438 * 6 5 4 9 9 C 1.46963 * 120.65136 * 6.09772 * 8 6 5 10 10 C 1.53190 * 108.88886 * 233.53659 * 9 8 6 11 11 C 1.53046 * 109.30977 * 305.44389 * 10 9 8 12 12 C 1.53035 * 109.53871 * 61.36331 * 11 10 9 13 13 C 1.46928 * 120.63382 * 186.27889 * 8 6 5 14 14 H 1.09003 * 109.58642 * 246.32537 * 13 8 6 15 15 C 1.52998 * 109.58443 * 6.60530 * 13 8 6 16 16 C 1.52994 * 112.85335 * 59.73319 * 15 13 8 17 17 N 1.46497 * 109.47748 * 186.86323 * 16 15 13 18 18 C 1.36938 * 120.00524 * 179.97438 * 17 16 15 19 19 H 1.07995 * 119.99604 * 0.02562 * 18 17 16 20 20 C 1.38812 * 119.99998 * 180.27635 * 18 17 16 21 21 N 1.31618 * 119.99670 * 179.72730 * 20 18 17 22 22 Si 1.86801 * 120.00092 * 359.73214 * 20 18 17 23 23 H 1.48491 * 109.47038 * 89.99695 * 22 20 18 24 24 H 1.48499 * 109.46775 * 209.99681 * 22 20 18 25 25 H 1.48498 * 109.46627 * 329.99326 * 22 20 18 26 26 C 1.53781 * 113.61455 * 190.93139 * 15 13 8 27 27 C 1.53958 * 87.02203 * 89.22838 * 26 15 13 28 28 C 1.53781 * 113.61417 * 288.53767 * 15 13 8 29 29 H 1.08994 * 109.47190 * 60.00181 * 1 2 3 30 30 H 1.09001 * 109.47117 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46874 * 299.99819 * 1 2 3 32 32 H 1.09000 * 109.46891 * 60.00049 * 3 2 1 33 33 H 1.09002 * 109.47044 * 300.00277 * 3 2 1 34 34 H 1.09000 * 109.47210 * 60.00280 * 4 3 2 35 35 H 1.08995 * 109.47182 * 300.00330 * 4 3 2 36 36 H 1.09000 * 109.46822 * 60.00068 * 5 4 3 37 37 H 1.09002 * 109.47016 * 300.00355 * 5 4 3 38 38 H 1.08999 * 109.46583 * 113.74639 * 9 8 6 39 39 H 1.08999 * 109.70989 * 353.46844 * 9 8 6 40 40 H 1.08999 * 109.49834 * 185.49519 * 10 9 8 41 41 H 1.08998 * 109.49926 * 65.38744 * 10 9 8 42 42 H 1.09009 * 109.45852 * 301.34140 * 11 10 9 43 43 H 1.09001 * 109.45797 * 181.38910 * 11 10 9 44 44 H 1.09003 * 109.49609 * 178.68365 * 12 11 10 45 45 H 1.08997 * 109.49705 * 58.59022 * 12 11 10 46 46 H 1.09005 * 109.46804 * 66.86672 * 16 15 13 47 47 H 1.09001 * 109.47594 * 306.86945 * 16 15 13 48 48 H 0.97004 * 119.99359 * 0.02562 * 17 16 15 49 49 H 0.97001 * 120.00128 * 180.02562 * 21 20 18 50 50 H 1.08998 * 113.61989 * 203.74936 * 26 15 13 51 51 H 1.09000 * 113.61267 * 334.65551 * 26 15 13 52 52 H 1.08998 * 113.53778 * 270.81493 * 27 26 15 53 53 H 1.08993 * 113.66958 * 139.93205 * 27 26 15 54 54 H 1.09000 * 113.61961 * 25.35255 * 28 15 13 55 55 H 1.09001 * 113.61498 * 156.25161 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 6 4.1578 2.5824 0.0000 6 6 5.6600 2.4634 0.0000 7 8 6.1816 1.3684 0.0000 8 7 6.4240 3.5737 -0.0010 9 6 5.8131 4.9037 0.1321 10 6 6.2846 5.7846 -1.0291 11 6 7.8146 5.7965 -1.0664 12 6 8.3320 4.3749 -1.2975 13 6 7.8836 3.4780 -0.1393 14 1 8.3605 3.8075 0.7838 15 6 8.2772 2.0286 -0.4309 16 6 7.6466 1.4887 -1.7161 17 7 7.9358 0.0578 -1.8384 18 6 7.4693 -0.6454 -2.9169 19 1 6.8886 -0.1450 -3.6775 20 6 7.7386 -2.0025 -3.0297 21 7 7.2856 -2.6794 -4.0636 22 14 8.7435 -2.8679 -1.7142 23 1 7.8359 -3.3887 -0.6606 24 1 9.4916 -3.9960 -2.3251 25 1 9.7020 -1.9070 -1.1115 26 6 9.7896 1.7688 -0.3306 27 6 9.5563 1.4595 1.1595 28 6 8.1132 1.0908 0.7768 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.6886 1.8463 0.8900 33 1 1.6886 1.8464 -0.8900 34 1 3.8575 0.6436 -0.8891 35 1 3.8567 0.6439 0.8908 36 1 3.8358 3.1238 0.8895 37 1 3.8364 3.1227 -0.8904 38 1 6.1191 5.3510 1.0778 39 1 4.7271 4.8138 0.1050 40 1 5.9163 6.8007 -0.8878 41 1 5.9010 5.3851 -1.9679 42 1 8.1980 6.1729 -0.1180 43 1 8.1530 6.4423 -1.8767 44 1 9.4208 4.3876 -1.3473 45 1 7.9290 3.9887 -2.2337 46 1 8.0612 2.0177 -2.5743 47 1 6.5677 1.6398 -1.6828 48 1 8.4572 -0.3917 -1.1549 49 1 7.4734 -3.6278 -4.1424 50 1 10.1240 0.9071 -0.9082 51 1 10.3975 2.6570 -0.5030 52 1 9.6269 2.3369 1.8024 53 1 10.1395 0.6156 1.5277 54 1 7.3696 1.4322 1.4970 55 1 7.9883 0.0433 0.5024 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001105511069.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:46:27 Heat of formation + Delta-G solvation = -25.230783 kcal Electronic energy + Delta-G solvation = -32814.303604 eV Core-core repulsion = 28853.391829 eV Total energy + Delta-G solvation = -3960.911774 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.50321 -39.47768 -38.79891 -38.26318 -35.99960 -34.68747 -33.62967 -33.24138 -32.17180 -29.04502 -28.70081 -26.98108 -26.57706 -25.78286 -24.92838 -23.80669 -23.27154 -22.76817 -21.36732 -20.27541 -19.82700 -18.56292 -17.89237 -17.44015 -17.34577 -16.97122 -16.62454 -16.54069 -16.21794 -15.83313 -15.61053 -15.18794 -15.08294 -14.98138 -14.80553 -14.70445 -14.48743 -14.19701 -14.04796 -13.49390 -13.43126 -13.12025 -13.01634 -12.90451 -12.84850 -12.75244 -12.55397 -12.33199 -12.19667 -12.05412 -11.96600 -11.89395 -11.84042 -11.75194 -11.62550 -11.42881 -11.06709 -10.91772 -10.76626 -10.73868 -10.60455 -9.81685 -9.36701 -8.98504 -8.03561 -5.29674 1.27200 1.32640 1.38374 1.87112 2.12901 2.44710 2.89584 3.27810 3.53239 3.68938 3.79030 3.79661 3.98935 4.00363 4.00937 4.06922 4.17365 4.19112 4.20783 4.35100 4.36756 4.40879 4.47959 4.49519 4.51763 4.56298 4.59063 4.63523 4.73428 4.78459 4.83971 4.85521 4.91739 4.98562 5.01879 5.04380 5.09423 5.12583 5.15464 5.18904 5.26866 5.28617 5.30750 5.33092 5.43243 5.54632 5.60460 5.72937 5.74874 5.86902 6.23388 6.29740 6.65732 7.10668 7.52291 7.93562 8.11976 9.19599 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.006720 B = 0.005959 C = 0.003642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4165.661772 B = 4697.441656 C = 7685.563627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.431 6.431 3 C 0.067 3.933 4 C -0.101 4.101 5 C -0.120 4.120 6 C 0.472 3.528 7 O -0.517 6.517 8 N -0.609 5.609 9 C 0.105 3.895 10 C -0.134 4.134 11 C -0.112 4.112 12 C -0.133 4.133 13 C 0.184 3.816 14 H 0.091 0.909 15 C -0.067 4.067 16 C 0.185 3.815 17 N -0.744 5.744 18 C -0.214 4.214 19 H 0.047 0.953 20 C -0.066 4.066 21 N -0.987 5.987 22 Si 0.949 3.051 23 H -0.286 1.286 24 H -0.288 1.288 25 H -0.259 1.259 26 C -0.137 4.137 27 C -0.151 4.151 28 C -0.070 4.070 29 H 0.050 0.950 30 H 0.087 0.913 31 H 0.060 0.940 32 H 0.077 0.923 33 H 0.061 0.939 34 H 0.032 0.968 35 H 0.055 0.945 36 H 0.127 0.873 37 H 0.107 0.893 38 H 0.089 0.911 39 H 0.104 0.896 40 H 0.101 0.899 41 H 0.050 0.950 42 H 0.080 0.920 43 H 0.069 0.931 44 H 0.077 0.923 45 H 0.043 0.957 46 H -0.015 1.015 47 H 0.037 0.963 48 H 0.362 0.638 49 H 0.256 0.744 50 H 0.051 0.949 51 H 0.085 0.915 52 H 0.102 0.898 53 H 0.055 0.945 54 H 0.063 0.937 55 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.025 24.598 15.411 29.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.351 6.351 3 C -0.009 4.009 4 C -0.140 4.140 5 C -0.159 4.159 6 C 0.262 3.738 7 O -0.394 6.394 8 N -0.344 5.344 9 C -0.017 4.017 10 C -0.172 4.172 11 C -0.150 4.150 12 C -0.171 4.171 13 C 0.081 3.919 14 H 0.109 0.891 15 C -0.068 4.068 16 C 0.060 3.940 17 N -0.390 5.390 18 C -0.346 4.346 19 H 0.065 0.935 20 C -0.257 4.257 21 N -0.639 5.639 22 Si 0.777 3.223 23 H -0.213 1.213 24 H -0.215 1.215 25 H -0.185 1.185 26 C -0.175 4.175 27 C -0.189 4.189 28 C -0.108 4.108 29 H 0.069 0.931 30 H 0.105 0.895 31 H 0.078 0.922 32 H 0.095 0.905 33 H 0.079 0.921 34 H 0.051 0.949 35 H 0.074 0.926 36 H 0.145 0.855 37 H 0.125 0.875 38 H 0.107 0.893 39 H 0.122 0.878 40 H 0.119 0.881 41 H 0.069 0.931 42 H 0.099 0.901 43 H 0.088 0.912 44 H 0.095 0.905 45 H 0.062 0.938 46 H 0.003 0.997 47 H 0.054 0.946 48 H 0.197 0.803 49 H 0.065 0.935 50 H 0.070 0.930 51 H 0.103 0.897 52 H 0.120 0.880 53 H 0.074 0.926 54 H 0.082 0.918 55 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -6.760 23.850 15.229 29.093 hybrid contribution 0.343 -1.457 -0.285 1.524 sum -6.417 22.393 14.943 27.675 Atomic orbital electron populations 1.22918 0.79317 1.03549 1.01187 1.87906 1.21828 1.29734 1.95658 1.22589 0.92457 0.84180 1.01698 1.21137 0.93927 0.97034 1.01865 1.21504 0.90620 0.97633 1.06161 1.21031 0.90501 0.84400 0.77872 1.91044 1.73252 1.28743 1.46315 1.48094 1.06138 1.06899 1.73284 1.22017 0.99445 0.80780 0.99435 1.21937 0.95932 1.01036 0.98329 1.21492 0.95866 0.94622 1.03014 1.21982 1.01411 0.96257 0.97471 1.20840 0.80430 0.91989 0.98684 0.89104 1.22041 0.94481 0.94990 0.95285 1.20878 0.97526 0.82401 0.93230 1.42716 1.64518 1.06930 1.24843 1.19010 1.24914 0.91687 0.98986 0.93469 1.25347 1.03146 0.97025 1.00183 1.69871 1.53212 1.08237 1.32600 0.85491 0.79180 0.78362 0.79268 1.21268 1.21473 1.18451 1.23006 0.96065 1.01325 0.97146 1.23203 0.98102 1.01743 0.95813 1.22605 0.93856 0.97936 0.96395 0.93088 0.89459 0.92169 0.90472 0.92108 0.94879 0.92631 0.85500 0.87514 0.89316 0.87796 0.88084 0.93123 0.90115 0.91180 0.90483 0.93834 0.99735 0.94562 0.80328 0.93542 0.93026 0.89694 0.87972 0.92580 0.91839 0.94206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 11.01 113.37 1.25 1.75 16 2 O -0.43 -12.52 10.70 -148.98 -1.59 -14.11 16 3 C 0.07 1.50 5.94 71.98 0.43 1.93 16 4 C -0.10 -2.91 4.87 30.59 0.15 -2.76 16 5 C -0.12 -2.44 4.06 29.85 0.12 -2.32 16 6 C 0.47 13.23 5.79 87.65 0.51 13.73 16 7 O -0.52 -19.98 7.18 -3.04 -0.02 -20.00 16 8 N -0.61 -13.06 2.96 -794.94 -2.35 -15.41 16 9 C 0.10 1.20 6.34 86.35 0.55 1.75 16 10 C -0.13 -1.53 6.08 30.67 0.19 -1.34 16 11 C -0.11 -1.51 5.88 30.62 0.18 -1.33 16 12 C -0.13 -2.84 5.05 30.67 0.15 -2.69 16 13 C 0.18 4.38 2.27 44.97 0.10 4.48 16 14 H 0.09 1.81 7.31 -2.39 -0.02 1.79 16 15 C -0.07 -2.27 0.24 -51.66 -0.01 -2.28 16 16 C 0.19 8.34 4.24 86.38 0.37 8.71 16 17 N -0.74 -40.63 4.56 -343.46 -1.56 -42.20 16 18 C -0.21 -13.84 10.47 84.03 0.88 -12.96 16 19 H 0.05 3.32 8.06 -2.91 -0.02 3.30 16 20 C -0.07 -4.35 5.50 84.86 0.47 -3.88 16 21 N -0.99 -68.74 13.97 21.65 0.30 -68.43 16 22 Si 0.95 51.76 27.73 68.60 1.90 53.67 16 23 H -0.29 -15.56 7.11 99.48 0.71 -14.85 16 24 H -0.29 -15.38 7.11 99.48 0.71 -14.67 16 25 H -0.26 -13.15 6.52 99.48 0.65 -12.50 16 26 C -0.14 -4.42 6.86 31.18 0.21 -4.21 16 27 C -0.15 -4.33 7.74 31.18 0.24 -4.08 16 28 C -0.07 -2.51 4.51 31.12 0.14 -2.37 16 29 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.03 1.28 8.10 -2.39 -0.02 1.26 16 35 H 0.05 1.79 8.10 -2.39 -0.02 1.77 16 36 H 0.13 1.53 7.70 -2.39 -0.02 1.51 16 37 H 0.11 1.81 7.94 -2.39 -0.02 1.79 16 38 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 39 H 0.10 0.78 5.95 -2.39 -0.01 0.77 16 40 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 41 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 42 H 0.08 0.82 8.14 -2.38 -0.02 0.80 16 43 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 44 H 0.08 1.57 7.30 -2.39 -0.02 1.55 16 45 H 0.04 1.21 6.61 -2.39 -0.02 1.19 16 46 H -0.01 -0.71 7.01 -2.38 -0.02 -0.73 16 47 H 0.04 1.74 4.68 -15.37 -0.07 1.67 16 48 H 0.36 19.40 2.85 -92.71 -0.26 19.14 16 49 H 0.26 16.92 8.31 -92.71 -0.77 16.15 16 50 H 0.05 2.04 7.13 -2.39 -0.02 2.02 16 51 H 0.08 2.22 7.23 -2.39 -0.02 2.20 16 52 H 0.10 2.24 7.60 -2.39 -0.02 2.22 16 53 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 54 H 0.06 2.19 6.57 -2.39 -0.02 2.17 16 55 H 0.04 1.79 6.07 -2.39 -0.01 1.77 16 Total: -1.00 -87.02 398.77 3.07 -83.95 By element: Atomic # 1 Polarization: 29.93 SS G_CDS: 0.48 Total: 30.41 kcal Atomic # 6 Polarization: -13.79 SS G_CDS: 5.92 Total: -7.87 kcal Atomic # 7 Polarization: -122.42 SS G_CDS: -3.61 Total: -126.04 kcal Atomic # 8 Polarization: -32.50 SS G_CDS: -1.62 Total: -34.12 kcal Atomic # 14 Polarization: 51.76 SS G_CDS: 1.90 Total: 53.67 kcal Total: -87.02 3.07 -83.95 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105511069.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.717 kcal (2) G-P(sol) polarization free energy of solvation -87.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds