Wall clock time and date at job start Tue Mar 31 2020 21:55:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42897 * 109.47497 * 2 1 4 4 C 1.42895 * 114.00224 * 185.14107 * 3 2 1 5 5 H 1.08994 * 109.47488 * 341.28875 * 4 3 2 6 6 C 1.50704 * 109.47462 * 221.28301 * 4 3 2 7 7 O 1.21281 * 119.99953 * 353.78648 * 6 4 3 8 8 N 1.34770 * 119.99966 * 173.77748 * 6 4 3 9 9 C 1.46503 * 119.99973 * 184.82651 * 8 6 4 10 10 C 1.52997 * 109.47268 * 180.02562 * 9 8 6 11 11 C 1.53511 * 111.16221 * 299.11725 * 10 9 8 12 12 C 1.54185 * 106.58653 * 240.88009 * 11 10 9 13 13 C 1.54739 * 104.34973 * 335.42765 * 12 11 10 14 14 C 1.54670 * 111.22737 * 180.02562 * 10 9 8 15 15 H 1.08992 * 112.40671 * 19.49014 * 14 10 9 16 16 N 1.47261 * 106.10150 * 256.40580 * 14 10 9 17 17 C 1.36939 * 126.51929 * 150.11085 * 16 14 10 18 18 H 1.08005 * 119.99729 * 359.97438 * 17 16 14 19 19 C 1.38808 * 119.99977 * 180.02562 * 17 16 14 20 20 N 1.31612 * 120.00328 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 119.99653 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47650 * 0.02562 * 21 19 17 23 23 H 1.48498 * 109.46885 * 120.00394 * 21 19 17 24 24 H 1.48499 * 109.47232 * 239.99891 * 21 19 17 25 25 C 1.47151 * 106.96321 * 330.07869 * 16 14 10 26 26 C 1.53676 * 111.17223 * 62.60442 * 10 9 8 27 27 C 1.53003 * 109.46861 * 101.28530 * 4 3 2 28 28 C 1.52999 * 109.47026 * 54.58759 * 27 4 3 29 29 C 1.52997 * 109.47461 * 294.58310 * 27 4 3 30 30 H 1.09002 * 109.46668 * 60.00302 * 1 2 3 31 31 H 1.08992 * 109.46963 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47255 * 300.00350 * 1 2 3 33 33 H 1.08998 * 109.47739 * 239.99690 * 2 1 3 34 34 H 1.09002 * 109.46668 * 119.99697 * 2 1 3 35 35 H 0.97002 * 120.00419 * 4.83320 * 8 6 4 36 36 H 1.09004 * 109.47473 * 300.00547 * 9 8 6 37 37 H 1.09004 * 109.47128 * 60.00399 * 9 8 6 38 38 H 1.09001 * 110.03889 * 0.98332 * 11 10 9 39 39 H 1.09001 * 110.04466 * 122.43608 * 11 10 9 40 40 H 1.09006 * 110.79533 * 216.49357 * 12 11 10 41 41 H 1.08997 * 110.11224 * 94.02529 * 12 11 10 42 42 H 1.09003 * 110.65103 * 278.62900 * 13 12 11 43 43 H 1.09000 * 110.64927 * 155.54017 * 13 12 11 44 44 H 0.96998 * 120.00171 * 179.97438 * 20 19 17 45 45 H 1.08998 * 110.09426 * 150.06328 * 25 16 14 46 46 H 1.09004 * 110.09041 * 271.59471 * 25 16 14 47 47 H 1.09000 * 110.22960 * 241.05867 * 26 10 9 48 48 H 1.08995 * 110.23137 * 3.01840 * 26 10 9 49 49 H 1.09005 * 109.46765 * 174.58350 * 27 4 3 50 50 H 1.09002 * 109.47401 * 55.54477 * 28 27 4 51 51 H 1.08999 * 109.47350 * 295.53961 * 28 27 4 52 52 H 1.09009 * 109.47015 * 175.54116 * 28 27 4 53 53 H 1.08992 * 109.47548 * 185.90607 * 29 27 4 54 54 H 1.08998 * 109.47323 * 305.91083 * 29 27 4 55 55 H 1.09003 * 109.46747 * 65.90925 * 29 27 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4260 1.4618 -0.1170 5 1 3.8901 0.5113 0.1461 6 6 3.9216 2.5378 0.8145 7 8 3.1293 3.2229 1.4258 8 7 5.2454 2.7386 0.9683 9 6 5.7294 3.7111 1.9512 10 6 7.2588 3.7455 1.9243 11 6 7.8503 2.3757 2.2848 12 6 8.6979 2.5830 3.5560 13 6 9.0829 4.0813 3.5201 14 6 7.8142 4.7613 2.9499 15 1 7.0869 5.0123 3.7218 16 7 8.2321 5.9400 2.1722 17 6 8.2409 7.2396 2.6035 18 1 7.9182 7.4780 3.6062 19 6 8.6635 8.2508 1.7515 20 7 9.0563 7.9604 0.5294 21 14 8.6748 10.0237 2.3398 22 1 8.1911 10.0831 3.7425 23 1 10.0581 10.5593 2.2706 24 1 7.7849 10.8382 1.4739 25 6 8.6391 5.4555 0.8437 26 6 7.7794 4.2119 0.5557 27 6 3.7912 1.8262 -1.5574 28 6 3.0329 3.0887 -1.9719 29 6 3.4092 0.6732 -2.4877 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8899 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 5.8777 2.2394 0.4281 36 1 5.3397 4.6994 1.7070 37 1 5.3896 3.4223 2.9459 38 1 7.0494 1.6594 2.4680 39 1 8.4914 2.0214 1.4776 40 1 9.5912 1.9587 3.5317 41 1 8.1037 2.3627 4.4428 42 1 9.9356 4.2434 2.8608 43 1 9.2969 4.4474 4.5242 44 1 9.3513 8.6670 -0.0660 45 1 8.4522 6.2223 0.0919 46 1 9.6957 5.1877 0.8503 47 1 8.3868 3.4314 0.0975 48 1 6.9455 4.4728 -0.0959 49 1 4.8639 2.0077 -1.6254 50 1 3.2440 3.8888 -1.2624 51 1 1.9625 2.8835 -1.9802 52 1 3.3522 3.3935 -2.9687 53 1 3.7633 0.8873 -3.4961 54 1 3.8668 -0.2492 -2.1301 55 1 2.3251 0.5600 -2.4998 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001107402898.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:55:39 Heat of formation + Delta-G solvation = -94.399523 kcal Electronic energy + Delta-G solvation = -31685.180943 eV Core-core repulsion = 27721.269787 eV Total energy + Delta-G solvation = -3963.911156 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.55471 -40.68367 -38.86436 -36.32379 -35.82815 -35.22619 -33.34166 -32.13101 -31.92926 -29.88932 -28.45020 -28.11646 -27.93929 -25.65825 -25.14408 -23.61427 -22.41765 -22.05436 -21.40395 -20.76316 -19.78312 -19.02623 -18.30595 -17.81084 -17.13595 -16.93588 -16.46957 -16.22780 -15.91558 -15.68749 -15.30205 -15.21187 -15.13708 -14.80572 -14.70017 -14.26541 -14.09203 -13.83404 -13.58712 -13.36025 -13.30445 -13.20299 -13.03165 -12.96046 -12.87112 -12.82547 -12.50834 -12.34348 -12.15235 -12.09528 -11.98156 -11.91264 -11.82474 -11.64400 -11.58997 -11.56836 -11.42541 -11.33614 -11.04344 -10.94207 -10.70509 -10.27726 -10.06521 -8.85566 -7.72980 -5.19207 1.44008 1.45090 1.54641 1.58926 1.91489 2.48750 2.93585 3.30985 3.52934 3.66523 3.71529 3.72776 3.78012 3.88493 4.01231 4.15107 4.22530 4.28433 4.33284 4.40287 4.43875 4.49136 4.52464 4.56651 4.64179 4.65405 4.68417 4.78157 4.80978 4.84669 4.91452 4.93742 4.97443 5.02222 5.05346 5.08438 5.15293 5.17081 5.19310 5.27448 5.28947 5.35652 5.40379 5.43172 5.46400 5.50139 5.53119 5.60678 5.71137 5.90272 6.17320 6.41212 6.60606 7.14178 7.26473 7.82357 8.48341 9.24790 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.014167 B = 0.002949 C = 0.002734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1975.965915 B = 9494.010849 C =10237.272631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.042 3.958 3 O -0.381 6.381 4 C 0.084 3.916 5 H 0.121 0.879 6 C 0.504 3.496 7 O -0.578 6.578 8 N -0.705 5.705 9 C 0.155 3.845 10 C -0.071 4.071 11 C -0.102 4.102 12 C -0.111 4.111 13 C -0.131 4.131 14 C 0.153 3.847 15 H 0.053 0.947 16 N -0.610 5.610 17 C -0.227 4.227 18 H 0.076 0.924 19 C -0.068 4.068 20 N -0.945 5.945 21 Si 0.973 3.027 22 H -0.270 1.270 23 H -0.291 1.291 24 H -0.294 1.294 25 C 0.140 3.860 26 C -0.115 4.115 27 C -0.105 4.105 28 C -0.141 4.141 29 C -0.143 4.143 30 H 0.058 0.942 31 H 0.095 0.905 32 H 0.046 0.954 33 H 0.077 0.923 34 H 0.054 0.946 35 H 0.415 0.585 36 H 0.028 0.972 37 H 0.063 0.937 38 H 0.084 0.916 39 H 0.082 0.918 40 H 0.079 0.921 41 H 0.071 0.929 42 H 0.046 0.954 43 H 0.049 0.951 44 H 0.245 0.755 45 H 0.082 0.918 46 H -0.015 1.015 47 H 0.088 0.912 48 H 0.050 0.950 49 H 0.096 0.904 50 H 0.020 0.980 51 H 0.056 0.944 52 H 0.067 0.933 53 H 0.069 0.931 54 H 0.077 0.923 55 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.949 -23.999 -4.461 25.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.033 4.033 3 O -0.300 6.300 4 C 0.023 3.977 5 H 0.138 0.862 6 C 0.290 3.710 7 O -0.456 6.456 8 N -0.359 5.359 9 C 0.031 3.969 10 C -0.073 4.073 11 C -0.140 4.140 12 C -0.149 4.149 13 C -0.171 4.171 14 C 0.045 3.955 15 H 0.072 0.928 16 N -0.332 5.332 17 C -0.356 4.356 18 H 0.094 0.906 19 C -0.260 4.260 20 N -0.596 5.596 21 Si 0.803 3.197 22 H -0.194 1.194 23 H -0.219 1.219 24 H -0.222 1.222 25 C 0.014 3.986 26 C -0.154 4.154 27 C -0.124 4.124 28 C -0.198 4.198 29 C -0.200 4.200 30 H 0.077 0.923 31 H 0.114 0.886 32 H 0.065 0.935 33 H 0.095 0.905 34 H 0.072 0.928 35 H 0.252 0.748 36 H 0.047 0.953 37 H 0.081 0.919 38 H 0.103 0.897 39 H 0.101 0.899 40 H 0.097 0.903 41 H 0.089 0.911 42 H 0.065 0.935 43 H 0.068 0.932 44 H 0.055 0.945 45 H 0.099 0.901 46 H 0.003 0.997 47 H 0.107 0.893 48 H 0.069 0.931 49 H 0.114 0.886 50 H 0.040 0.960 51 H 0.075 0.925 52 H 0.086 0.914 53 H 0.088 0.912 54 H 0.096 0.904 55 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -9.609 -23.123 -4.053 25.365 hybrid contribution 0.602 1.621 0.173 1.738 sum -9.006 -21.502 -3.880 23.632 Atomic orbital electron populations 1.21755 0.93348 1.03356 1.02282 1.22946 0.96241 0.82596 1.01553 1.88042 1.19284 1.28285 1.94360 1.22084 0.83902 0.97612 0.94126 0.86187 1.21288 0.82275 0.85048 0.82344 1.90699 1.56269 1.49118 1.49556 1.45805 1.06543 1.42618 1.40956 1.21033 0.93050 0.91094 0.91696 1.21852 0.92280 0.96891 0.96271 1.22197 0.99364 0.93802 0.98604 1.22227 0.99956 0.94561 0.98194 1.22858 0.98300 0.96390 0.99512 1.21993 0.94371 0.86342 0.92826 0.92849 1.44802 1.75137 1.01657 1.11569 1.19448 1.35613 0.83155 0.97411 0.90621 1.25516 1.02258 1.01653 0.96607 1.69903 1.51613 1.30937 1.07134 0.85069 0.76774 0.80303 0.77601 1.19434 1.21857 1.22165 1.21632 0.93130 0.94763 0.89068 1.22554 0.99140 0.98234 0.95439 1.21590 1.01256 0.97060 0.92503 1.21693 1.00912 0.96521 1.00697 1.21874 1.02033 0.96853 0.99218 0.92278 0.88649 0.93452 0.90468 0.92764 0.74763 0.95315 0.91905 0.89701 0.89942 0.90273 0.91057 0.93539 0.93199 0.94495 0.90058 0.99680 0.89327 0.93115 0.88625 0.96034 0.92532 0.91449 0.91195 0.90447 0.92340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.09 10.28 71.98 0.74 -1.35 16 2 C 0.04 0.63 6.03 71.98 0.43 1.07 16 3 O -0.38 -8.95 8.51 -130.02 -1.11 -10.05 16 4 C 0.08 1.67 2.36 29.85 0.07 1.74 16 5 H 0.12 1.49 7.69 -2.39 -0.02 1.48 16 6 C 0.50 14.46 6.09 87.66 0.53 14.99 16 7 O -0.58 -23.20 16.52 15.93 0.26 -22.94 16 8 N -0.71 -17.60 4.77 -463.05 -2.21 -19.82 16 9 C 0.16 4.99 4.27 86.38 0.37 5.36 16 10 C -0.07 -2.22 0.65 -51.21 -0.03 -2.25 16 11 C -0.10 -2.27 5.62 31.17 0.18 -2.10 16 12 C -0.11 -2.68 6.83 31.59 0.22 -2.46 16 13 C -0.13 -4.52 6.37 31.81 0.20 -4.31 16 14 C 0.15 6.08 3.59 46.04 0.17 6.24 16 15 H 0.05 2.21 7.95 -2.39 -0.02 2.19 16 16 N -0.61 -31.01 2.98 -666.32 -1.99 -33.00 16 17 C -0.23 -12.88 10.33 84.03 0.87 -12.01 16 18 H 0.08 4.19 7.83 -2.91 -0.02 4.17 16 19 C -0.07 -3.93 5.49 84.86 0.47 -3.46 16 20 N -0.95 -56.79 10.06 21.65 0.22 -56.57 16 21 Si 0.97 47.00 29.55 68.60 2.03 49.03 16 22 H -0.27 -12.40 7.11 99.48 0.71 -11.70 16 23 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 24 H -0.29 -14.28 7.11 99.48 0.71 -13.57 16 25 C 0.14 6.74 5.68 86.56 0.49 7.23 16 26 C -0.12 -4.00 5.82 31.12 0.18 -3.82 16 27 C -0.11 -1.76 2.73 -10.79 -0.03 -1.79 16 28 C -0.14 -3.24 8.80 71.98 0.63 -2.61 16 29 C -0.14 -1.56 7.99 71.98 0.57 -0.99 16 30 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.08 0.76 6.07 -2.39 -0.01 0.75 16 34 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.41 7.45 7.50 -92.71 -0.70 6.76 16 36 H 0.03 1.18 8.14 -2.38 -0.02 1.16 16 37 H 0.06 2.01 8.14 -2.38 -0.02 1.99 16 38 H 0.08 1.52 7.47 -2.39 -0.02 1.51 16 39 H 0.08 1.59 7.10 -2.39 -0.02 1.57 16 40 H 0.08 1.62 8.14 -2.38 -0.02 1.60 16 41 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 42 H 0.05 1.82 7.28 -2.39 -0.02 1.80 16 43 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 44 H 0.24 14.33 8.31 -92.71 -0.77 13.55 16 45 H 0.08 4.61 5.45 -2.39 -0.01 4.60 16 46 H -0.01 -0.75 7.71 -2.38 -0.02 -0.77 16 47 H 0.09 2.47 7.11 -2.39 -0.02 2.46 16 48 H 0.05 1.82 7.62 -2.39 -0.02 1.80 16 49 H 0.10 1.38 7.73 -2.38 -0.02 1.36 16 50 H 0.02 0.63 7.26 -2.39 -0.02 0.61 16 51 H 0.06 1.36 7.70 -2.39 -0.02 1.34 16 52 H 0.07 1.34 8.14 -2.38 -0.02 1.32 16 53 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 54 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 55 H 0.06 0.70 6.81 -2.39 -0.02 0.68 16 Total: -1.00 -76.37 414.95 3.42 -72.95 By element: Atomic # 1 Polarization: 20.78 SS G_CDS: 0.16 Total: 20.93 kcal Atomic # 6 Polarization: -6.59 SS G_CDS: 6.06 Total: -0.53 kcal Atomic # 7 Polarization: -105.40 SS G_CDS: -3.98 Total: -109.38 kcal Atomic # 8 Polarization: -32.15 SS G_CDS: -0.84 Total: -32.99 kcal Atomic # 14 Polarization: 47.00 SS G_CDS: 2.03 Total: 49.03 kcal Total: -76.37 3.42 -72.95 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107402898.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.448 kcal (2) G-P(sol) polarization free energy of solvation -76.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds