Wall clock time and date at job start Tue Mar 31 2020 21:55:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42901 * 109.47464 * 2 1 4 4 C 1.42893 * 114.00343 * 174.94913 * 3 2 1 5 5 H 1.09004 * 109.47322 * 342.62680 * 4 3 2 6 6 C 1.50704 * 109.47177 * 222.62685 * 4 3 2 7 7 O 1.21278 * 119.99930 * 354.99357 * 6 4 3 8 8 N 1.34781 * 119.99925 * 175.00071 * 6 4 3 9 9 C 1.48117 * 127.84481 * 0.02562 * 8 6 4 10 10 C 1.54328 * 104.69574 * 219.74686 * 9 8 6 11 11 H 1.08995 * 111.85511 * 214.56928 * 10 9 8 12 12 C 1.54167 * 108.85486 * 89.56641 * 10 9 8 13 13 C 1.55773 * 103.88321 * 222.52731 * 12 10 9 14 14 C 1.54849 * 102.30965 * 39.35314 * 13 12 10 15 15 C 1.54160 * 104.32498 * 321.12900 * 14 13 12 16 16 C 1.53002 * 111.82508 * 261.24625 * 15 14 13 17 17 N 1.46500 * 109.46964 * 299.26205 * 16 15 14 18 18 C 1.36943 * 119.99826 * 179.97438 * 17 16 15 19 19 H 1.07991 * 120.00367 * 359.97438 * 18 17 16 20 20 C 1.38819 * 119.99638 * 179.97438 * 18 17 16 21 21 N 1.31613 * 120.00139 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 119.99588 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47237 * 60.00209 * 22 20 18 24 24 H 1.48497 * 109.46914 * 179.97438 * 22 20 18 25 25 H 1.48494 * 109.46891 * 299.99738 * 22 20 18 26 26 C 1.48121 * 127.84027 * 180.02562 * 8 6 4 27 27 C 1.52999 * 109.47606 * 102.62527 * 4 3 2 28 28 C 1.53002 * 109.46840 * 296.34637 * 27 4 3 29 29 C 1.53007 * 109.47090 * 56.34234 * 27 4 3 30 30 H 1.08997 * 109.46950 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47286 * 300.00183 * 1 2 3 32 32 H 1.09007 * 109.46629 * 60.00225 * 1 2 3 33 33 H 1.09000 * 109.47286 * 239.99817 * 2 1 3 34 34 H 1.09005 * 109.47361 * 119.99853 * 2 1 3 35 35 H 1.09003 * 110.38677 * 100.94303 * 9 8 6 36 36 H 1.08996 * 110.39306 * 338.55917 * 9 8 6 37 37 H 1.08993 * 110.46591 * 342.50383 * 12 10 9 38 38 H 1.09005 * 110.45775 * 105.08273 * 12 10 9 39 39 H 1.09000 * 111.54468 * 280.91916 * 13 12 10 40 40 H 1.08998 * 110.53268 * 157.32880 * 13 12 10 41 41 H 1.09001 * 110.45804 * 202.42325 * 14 13 12 42 42 H 1.08994 * 110.45970 * 79.83949 * 14 13 12 43 43 H 1.09006 * 109.47124 * 59.25943 * 16 15 14 44 44 H 1.08998 * 109.47285 * 179.26047 * 16 15 14 45 45 H 0.96995 * 120.00479 * 359.97438 * 17 16 15 46 46 H 0.96998 * 119.99957 * 179.97438 * 21 20 18 47 47 H 1.08993 * 110.39182 * 21.44828 * 26 8 6 48 48 H 1.08996 * 110.48712 * 259.10470 * 26 8 6 49 49 H 1.09002 * 109.47524 * 176.34707 * 27 4 3 50 50 H 1.09000 * 109.47439 * 66.76645 * 28 27 4 51 51 H 1.09004 * 109.46717 * 186.76429 * 28 27 4 52 52 H 1.08997 * 109.47075 * 306.76319 * 28 27 4 53 53 H 1.08998 * 109.46530 * 60.00619 * 29 27 4 54 54 H 1.08998 * 109.46781 * 180.02562 * 29 27 4 55 55 H 1.08996 * 109.47064 * 300.00235 * 29 27 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4261 1.4618 0.1149 5 1 3.8376 0.5227 0.4849 6 6 3.7643 2.5719 1.0764 7 8 2.8816 3.2620 1.5406 8 7 5.0478 2.7979 1.4202 9 6 6.2531 2.0689 0.9623 10 6 7.1410 1.9520 2.2191 11 1 8.2013 2.0128 1.9740 12 6 6.7802 0.6518 2.9649 13 6 6.7570 1.0748 4.4639 14 6 6.0981 2.4747 4.4017 15 6 6.6906 3.1192 3.1328 16 6 7.8469 4.0655 3.4623 17 7 7.3631 5.1455 4.3258 18 6 8.2262 6.1188 4.7536 19 1 9.2636 6.0901 4.4547 20 6 7.7677 7.1425 5.5714 21 7 6.5033 7.1779 5.9353 22 14 8.9449 8.4706 6.1543 23 1 9.5142 9.1779 4.9793 24 1 8.2133 9.4404 7.0085 25 1 10.0427 7.8497 6.9381 26 6 5.5731 3.8316 2.3419 27 6 4.0253 1.7755 -1.2574 28 6 3.7602 0.6069 -2.2088 29 6 3.3807 3.0452 -1.8173 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8901 33 1 1.8933 -0.5139 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 6.7670 2.6351 0.1855 36 1 5.9818 1.0790 0.5954 37 1 5.8101 0.2800 2.6351 38 1 7.5513 -0.1028 2.8099 39 1 7.7636 1.1397 4.8771 40 1 6.1456 0.3856 5.0462 41 1 6.3605 3.0588 5.2838 42 1 5.0157 2.3827 4.3125 43 1 8.6330 3.5131 3.9772 44 1 8.2445 4.4884 2.5397 45 1 6.4315 5.1712 4.5946 46 1 6.1830 7.8930 6.5070 47 1 4.7883 4.1728 3.0168 48 1 5.9815 4.6716 1.7800 49 1 5.1002 1.9269 -1.1586 50 1 2.6902 0.5313 -2.4022 51 1 4.2880 0.7757 -3.1475 52 1 4.1136 -0.3188 -1.7546 53 1 3.5696 3.8776 -1.1395 54 1 3.8073 3.2684 -2.7952 55 1 2.3058 2.8937 -1.9161 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001112350398.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:55:30 Heat of formation + Delta-G solvation = -100.804062 kcal Electronic energy + Delta-G solvation = -31968.957558 eV Core-core repulsion = 28004.768680 eV Total energy + Delta-G solvation = -3964.188878 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.93120 -40.42862 -38.67611 -36.56707 -35.94130 -35.30157 -33.44526 -32.08943 -31.17087 -30.82832 -28.61984 -28.11248 -26.69131 -26.47079 -25.02911 -23.77873 -23.65162 -21.69085 -21.30984 -20.52045 -19.91221 -19.11421 -18.01992 -17.70154 -17.18694 -16.94444 -16.58267 -16.35718 -15.91061 -15.83578 -15.31989 -15.15174 -15.04595 -14.96539 -14.68605 -14.46297 -14.25841 -13.90642 -13.84496 -13.28189 -13.24729 -13.13274 -13.07005 -13.04037 -12.96866 -12.82479 -12.65588 -12.35888 -12.23944 -12.11335 -12.03756 -11.93376 -11.88333 -11.81089 -11.75122 -11.55052 -11.52094 -11.47708 -11.38094 -10.99549 -10.90997 -10.30077 -9.73627 -8.97821 -7.93626 -5.22461 1.45845 1.49415 1.52990 1.55484 1.68461 2.56058 2.81968 3.27117 3.39735 3.46537 3.60478 3.61764 3.67391 3.82990 4.11668 4.14762 4.18910 4.21820 4.24845 4.27682 4.31316 4.39436 4.41815 4.44998 4.48804 4.55825 4.65514 4.68107 4.69966 4.72949 4.80579 4.81217 4.91677 4.92708 4.95180 4.98869 5.01741 5.01781 5.08609 5.13445 5.15485 5.23717 5.26276 5.31774 5.35133 5.40667 5.43791 5.44566 5.51179 5.54059 6.15358 6.27419 6.56546 7.11881 7.33700 8.11272 8.32849 9.29941 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.015837 B = 0.002886 C = 0.002776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1767.576610 B = 9700.938885 C =10084.140273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.044 3.956 3 O -0.382 6.382 4 C 0.091 3.909 5 H 0.115 0.885 6 C 0.520 3.480 7 O -0.585 6.585 8 N -0.612 5.612 9 C 0.100 3.900 10 C -0.091 4.091 11 H 0.119 0.881 12 C -0.103 4.103 13 C -0.117 4.117 14 C -0.112 4.112 15 C -0.067 4.067 16 C 0.174 3.826 17 N -0.744 5.744 18 C -0.241 4.241 19 H 0.080 0.920 20 C -0.080 4.080 21 N -0.973 5.973 22 Si 0.974 3.026 23 H -0.277 1.277 24 H -0.300 1.300 25 H -0.275 1.275 26 C 0.126 3.874 27 C -0.105 4.105 28 C -0.142 4.142 29 C -0.141 4.141 30 H 0.096 0.904 31 H 0.043 0.957 32 H 0.059 0.941 33 H 0.080 0.920 34 H 0.054 0.946 35 H 0.091 0.909 36 H 0.116 0.884 37 H 0.070 0.930 38 H 0.097 0.903 39 H 0.071 0.929 40 H 0.068 0.932 41 H 0.042 0.958 42 H 0.041 0.959 43 H 0.032 0.968 44 H 0.027 0.973 45 H 0.371 0.629 46 H 0.249 0.751 47 H 0.037 0.963 48 H 0.059 0.941 49 H 0.101 0.899 50 H 0.055 0.945 51 H 0.074 0.926 52 H 0.076 0.924 53 H 0.019 0.981 54 H 0.074 0.926 55 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.935 -24.102 -18.579 30.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.032 4.032 3 O -0.301 6.301 4 C 0.030 3.970 5 H 0.132 0.868 6 C 0.310 3.690 7 O -0.465 6.465 8 N -0.346 5.346 9 C -0.021 4.021 10 C -0.110 4.110 11 H 0.137 0.863 12 C -0.140 4.140 13 C -0.155 4.155 14 C -0.150 4.150 15 C -0.068 4.068 16 C 0.047 3.953 17 N -0.387 5.387 18 C -0.372 4.372 19 H 0.098 0.902 20 C -0.271 4.271 21 N -0.624 5.624 22 Si 0.803 3.197 23 H -0.203 1.203 24 H -0.226 1.226 25 H -0.201 1.201 26 C 0.003 3.997 27 C -0.124 4.124 28 C -0.199 4.199 29 C -0.198 4.198 30 H 0.115 0.885 31 H 0.062 0.938 32 H 0.079 0.921 33 H 0.098 0.902 34 H 0.072 0.928 35 H 0.109 0.891 36 H 0.134 0.866 37 H 0.089 0.911 38 H 0.116 0.884 39 H 0.090 0.910 40 H 0.087 0.913 41 H 0.061 0.939 42 H 0.059 0.941 43 H 0.049 0.951 44 H 0.045 0.955 45 H 0.203 0.797 46 H 0.058 0.942 47 H 0.056 0.944 48 H 0.077 0.923 49 H 0.119 0.881 50 H 0.074 0.926 51 H 0.093 0.907 52 H 0.095 0.905 53 H 0.038 0.962 54 H 0.093 0.907 55 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -2.496 -23.537 -18.398 29.979 hybrid contribution -0.232 1.762 1.306 2.206 sum -2.728 -21.775 -17.092 27.816 Atomic orbital electron populations 1.21769 0.93451 1.03408 1.02203 1.22959 0.96194 0.82439 1.01594 1.88028 1.19528 1.28481 1.94041 1.22019 0.83857 0.96535 0.94591 0.86774 1.21093 0.80432 0.85772 0.81715 1.90708 1.47860 1.51130 1.56754 1.48985 1.05774 1.34437 1.45448 1.22907 0.83929 0.98500 0.96799 1.22831 1.01052 0.93530 0.93591 0.86262 1.22539 1.02333 0.96065 0.93083 1.22618 1.00597 0.94247 0.97988 1.22309 0.98273 0.97599 0.96770 1.22132 0.93972 0.95521 0.95198 1.20733 0.93875 0.87806 0.92859 1.42611 1.09641 1.27621 1.58790 1.19627 0.92692 1.02076 1.22845 0.90208 1.25598 0.97714 1.01944 1.01882 1.69840 1.15525 1.35375 1.41684 0.85199 0.77881 0.78773 0.77841 1.20328 1.22646 1.20107 1.22097 0.95193 0.90695 0.91701 1.21641 1.00828 0.97319 0.92578 1.21866 1.02362 0.96516 0.99132 1.21697 1.01222 0.96226 1.00663 0.88493 0.93793 0.92142 0.90232 0.92810 0.89110 0.86614 0.91149 0.88445 0.91049 0.91290 0.93911 0.94052 0.95052 0.95482 0.79712 0.94236 0.94396 0.92321 0.88103 0.92557 0.90664 0.90519 0.96169 0.90685 0.92935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.31 10.28 71.98 0.74 -1.57 16 2 C 0.04 0.70 6.12 71.98 0.44 1.14 16 3 O -0.38 -9.45 8.43 -129.99 -1.10 -10.55 16 4 C 0.09 1.92 1.67 29.85 0.05 1.97 16 5 H 0.11 1.64 7.19 -2.38 -0.02 1.62 16 6 C 0.52 16.46 6.21 87.66 0.54 17.01 16 7 O -0.59 -25.85 16.77 15.97 0.27 -25.58 16 8 N -0.61 -17.11 3.31 -808.33 -2.68 -19.79 16 9 C 0.10 1.70 4.63 86.52 0.40 2.10 16 10 C -0.09 -1.76 3.55 -9.29 -0.03 -1.80 16 11 H 0.12 1.88 7.88 -2.39 -0.02 1.87 16 12 C -0.10 -1.70 6.30 31.95 0.20 -1.50 16 13 C -0.12 -2.75 6.95 32.18 0.22 -2.53 16 14 C -0.11 -3.72 5.58 31.62 0.18 -3.55 16 15 C -0.07 -2.09 0.61 -50.68 -0.03 -2.12 16 16 C 0.17 6.65 5.14 86.38 0.44 7.10 16 17 N -0.74 -38.21 4.91 -343.44 -1.69 -39.90 16 18 C -0.24 -13.55 9.99 84.03 0.84 -12.71 16 19 H 0.08 4.23 7.83 -2.92 -0.02 4.21 16 20 C -0.08 -4.69 5.50 84.86 0.47 -4.22 16 21 N -0.97 -62.14 13.06 21.65 0.28 -61.86 16 22 Si 0.97 47.19 29.55 68.60 2.03 49.22 16 23 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 24 H -0.30 -14.82 7.11 99.48 0.71 -14.11 16 25 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 26 C 0.13 4.55 5.49 86.52 0.48 5.03 16 27 C -0.10 -1.66 2.60 -10.79 -0.03 -1.69 16 28 C -0.14 -1.35 8.05 71.98 0.58 -0.77 16 29 C -0.14 -3.02 8.81 71.98 0.63 -2.38 16 30 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.06 0.94 8.14 -2.38 -0.02 0.92 16 33 H 0.08 0.82 6.23 -2.39 -0.01 0.81 16 34 H 0.05 0.78 8.02 -2.38 -0.02 0.76 16 35 H 0.09 1.31 8.05 -2.39 -0.02 1.29 16 36 H 0.12 1.11 6.31 -2.39 -0.02 1.10 16 37 H 0.07 1.09 7.58 -2.39 -0.02 1.07 16 38 H 0.10 1.06 8.14 -2.38 -0.02 1.04 16 39 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 40 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 41 H 0.04 1.75 7.14 -2.39 -0.02 1.73 16 42 H 0.04 1.50 7.64 -2.39 -0.02 1.48 16 43 H 0.03 1.18 8.14 -2.38 -0.02 1.16 16 44 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 45 H 0.37 21.00 6.87 -92.71 -0.64 20.36 16 46 H 0.25 15.52 8.31 -92.71 -0.77 14.75 16 47 H 0.04 1.70 7.49 -2.39 -0.02 1.68 16 48 H 0.06 2.26 7.95 -2.39 -0.02 2.24 16 49 H 0.10 1.28 5.94 -2.39 -0.01 1.27 16 50 H 0.06 0.63 6.85 -2.39 -0.02 0.62 16 51 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 52 H 0.08 0.42 8.14 -2.39 -0.02 0.41 16 53 H 0.02 0.55 7.33 -2.39 -0.02 0.54 16 54 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 55 H 0.05 1.25 7.59 -2.39 -0.02 1.23 16 Total: -1.00 -80.86 416.57 3.46 -77.41 By element: Atomic # 1 Polarization: 31.33 SS G_CDS: 0.22 Total: 31.54 kcal Atomic # 6 Polarization: -6.61 SS G_CDS: 6.12 Total: -0.49 kcal Atomic # 7 Polarization: -117.46 SS G_CDS: -4.08 Total: -121.55 kcal Atomic # 8 Polarization: -35.30 SS G_CDS: -0.83 Total: -36.13 kcal Atomic # 14 Polarization: 47.19 SS G_CDS: 2.03 Total: 49.22 kcal Total: -80.86 3.46 -77.41 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112350398.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.397 kcal (2) G-P(sol) polarization free energy of solvation -80.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds