Wall clock time and date at job start Tue Mar 31 2020 22:03:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50694 * 119.99840 * 2 1 4 4 C 1.50694 * 119.99966 * 179.97438 * 2 1 3 5 5 H 1.09006 * 109.47106 * 355.00227 * 4 2 1 6 6 C 1.52997 * 109.47061 * 115.00009 * 4 2 1 7 7 C 1.50708 * 109.47345 * 185.00136 * 6 4 2 8 8 O 1.21278 * 119.99459 * 359.97438 * 7 6 4 9 9 N 1.34772 * 120.00101 * 180.02562 * 7 6 4 10 10 C 1.46504 * 119.99887 * 179.97438 * 9 7 6 11 11 C 1.52998 * 109.46757 * 175.77423 * 10 9 7 12 12 N 1.46507 * 109.47190 * 305.24346 * 11 10 9 13 13 C 1.36933 * 120.00044 * 301.12396 * 12 11 10 14 14 H 1.08001 * 120.00287 * 353.39243 * 13 12 11 15 15 C 1.38809 * 119.99983 * 173.40367 * 13 12 11 16 16 N 1.31622 * 120.00454 * 179.97438 * 15 13 12 17 17 Si 1.86802 * 119.99853 * 359.97438 * 15 13 12 18 18 H 1.48499 * 109.47201 * 90.00141 * 17 15 13 19 19 H 1.48505 * 109.47073 * 210.00472 * 17 15 13 20 20 H 1.48496 * 109.47250 * 329.99882 * 17 15 13 21 21 C 1.53004 * 109.47013 * 185.25088 * 11 10 9 22 22 C 1.53001 * 109.47527 * 179.97438 * 21 11 10 23 23 C 1.53002 * 109.46952 * 59.99299 * 22 21 11 24 24 C 1.52997 * 109.47291 * 300.00275 * 23 22 21 25 25 C 1.52995 * 109.47466 * 65.24955 * 11 10 9 26 26 O 1.42899 * 109.47416 * 235.00409 * 4 2 1 27 27 C 1.42895 * 114.00198 * 89.99844 * 26 4 2 28 28 C 1.53002 * 109.46765 * 180.02562 * 27 26 4 29 29 H 1.08007 * 120.00036 * 180.02562 * 1 2 3 30 30 H 1.08006 * 120.00081 * 359.97438 * 1 2 3 31 31 H 1.09005 * 109.47088 * 179.97438 * 3 2 1 32 32 H 1.09000 * 109.47582 * 299.99931 * 3 2 1 33 33 H 1.08999 * 109.47681 * 60.00021 * 3 2 1 34 34 H 1.09002 * 109.47249 * 305.00062 * 6 4 2 35 35 H 1.09003 * 109.47377 * 64.99972 * 6 4 2 36 36 H 0.96998 * 120.00382 * 359.97438 * 9 7 6 37 37 H 1.09002 * 109.46948 * 295.77186 * 10 9 7 38 38 H 1.08994 * 109.46957 * 55.77643 * 10 9 7 39 39 H 0.96996 * 119.99623 * 121.12086 * 12 11 10 40 40 H 0.96993 * 119.99978 * 179.97438 * 16 15 13 41 41 H 1.09005 * 109.47014 * 299.99758 * 21 11 10 42 42 H 1.09002 * 109.47394 * 59.99613 * 21 11 10 43 43 H 1.08997 * 109.46492 * 299.99949 * 22 21 11 44 44 H 1.08994 * 109.47161 * 179.97438 * 22 21 11 45 45 H 1.09002 * 109.46738 * 179.97438 * 23 22 21 46 46 H 1.09005 * 109.46835 * 60.00641 * 23 22 21 47 47 H 1.08991 * 109.47322 * 300.00010 * 24 23 22 48 48 H 1.09005 * 109.46645 * 179.97438 * 24 23 22 49 49 H 1.09002 * 109.46905 * 299.99641 * 25 11 10 50 50 H 1.08991 * 109.47204 * 59.99789 * 25 11 10 51 51 H 1.09001 * 109.47201 * 299.99745 * 27 26 4 52 52 H 1.08998 * 109.47105 * 60.00312 * 27 26 4 53 53 H 1.09000 * 109.46925 * 179.97438 * 28 27 26 54 54 H 1.08998 * 109.47643 * 300.00094 * 28 27 26 55 55 H 1.08998 * 109.47134 * 60.00231 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 2.0635 -1.3051 0.0006 5 1 1.3585 -2.1316 0.0905 6 6 2.8464 -1.4425 -1.3067 7 6 3.5008 -2.7990 -1.3601 8 8 3.3557 -3.5788 -0.4427 9 7 4.2482 -3.1451 -2.4269 10 6 4.8848 -4.4636 -2.4786 11 6 5.5803 -4.6414 -3.8297 12 7 4.6170 -4.4101 -4.9090 13 6 3.4864 -5.1780 -4.9939 14 1 3.3556 -6.0216 -4.3324 15 6 2.5086 -4.8723 -5.9305 16 7 1.4220 -5.6107 -6.0125 17 14 2.7346 -3.4130 -7.0745 18 1 3.4286 -3.8558 -8.3105 19 1 1.4064 -2.8501 -7.4271 20 1 3.5484 -2.3730 -6.3954 21 6 6.1327 -6.0643 -3.9356 22 6 6.8276 -6.2425 -5.2869 23 6 7.9766 -5.2391 -5.4057 24 6 7.4242 -3.8163 -5.3000 25 6 6.7294 -3.6382 -3.9479 26 8 2.9708 -1.3308 1.1042 27 6 2.4138 -1.8756 2.3021 28 6 3.4678 -1.8530 3.4109 29 1 -0.5400 -0.9354 0.0004 30 1 -0.5400 0.9354 0.0004 31 1 3.1351 1.1059 0.0005 32 1 1.8002 1.8767 -0.8900 33 1 1.8002 1.8767 0.8899 34 1 2.1656 -1.3340 -2.1511 35 1 3.6116 -0.6677 -1.3551 36 1 4.3646 -2.5213 -3.1605 37 1 5.6203 -4.5435 -1.6780 38 1 4.1276 -5.2377 -2.3550 39 1 4.7801 -3.7129 -5.5634 40 1 0.7386 -5.3968 -6.6667 41 1 6.8494 -6.2365 -3.1325 42 1 5.3141 -6.7791 -3.8514 43 1 6.1106 -6.0704 -6.0896 44 1 7.2215 -7.2560 -5.3621 45 1 8.4720 -5.3664 -6.3683 46 1 8.6936 -5.4112 -4.6030 47 1 6.7072 -3.6443 -6.1026 48 1 8.2428 -3.1015 -5.3841 49 1 6.3358 -2.6245 -3.8725 50 1 7.4460 -3.8103 -3.1449 51 1 1.5537 -1.2793 2.6068 52 1 2.0980 -2.9031 2.1214 53 1 3.0428 -2.2681 4.3247 54 1 4.3283 -2.4489 3.1065 55 1 3.7832 -0.8254 3.5915 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001115559952.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:03:16 Heat of formation + Delta-G solvation = -94.042756 kcal Electronic energy + Delta-G solvation = -31528.282746 eV Core-core repulsion = 27564.387060 eV Total energy + Delta-G solvation = -3963.895686 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.11977 -40.19309 -39.05176 -36.10181 -35.88983 -35.03875 -33.17081 -32.58951 -31.59969 -31.31959 -30.45461 -28.24017 -26.91090 -25.39432 -24.65396 -23.65808 -23.44992 -21.80508 -21.19302 -19.81361 -19.76952 -19.67301 -17.99613 -17.86982 -17.02126 -16.66579 -16.52098 -16.29575 -16.07907 -15.67809 -15.36951 -15.07269 -15.03239 -14.85458 -14.69445 -14.33775 -14.21387 -14.02063 -13.92837 -13.77318 -13.35614 -13.30297 -13.13564 -12.94373 -12.84605 -12.77895 -12.64329 -12.60176 -12.48517 -12.33781 -12.08743 -11.97274 -11.93575 -11.80419 -11.68431 -11.25930 -11.19980 -10.92052 -10.74204 -10.69335 -10.46383 -10.09468 -9.85956 -9.23229 -7.92675 -5.25951 1.16925 1.38714 1.43127 1.50659 1.79298 2.39955 2.54228 2.78446 3.38155 3.54900 3.67836 3.87679 3.90122 3.94564 3.95981 4.06109 4.15666 4.22193 4.34102 4.37105 4.41634 4.44315 4.49613 4.57261 4.62972 4.71487 4.72262 4.75071 4.77309 4.79418 4.86103 4.89399 4.93430 4.95044 5.01404 5.05862 5.07236 5.16445 5.16903 5.22003 5.24469 5.42108 5.43111 5.48931 5.57223 5.60800 5.67583 5.73094 5.80787 5.89905 6.30507 6.32286 6.71985 7.17735 7.40792 7.90889 8.12401 9.29570 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.010844 B = 0.003589 C = 0.003079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2581.519935 B = 7799.217291 C = 9091.203352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.154 4.154 3 C -0.108 4.108 4 C 0.144 3.856 5 H 0.047 0.953 6 C -0.130 4.130 7 C 0.507 3.493 8 O -0.585 6.585 9 N -0.700 5.700 10 C 0.128 3.872 11 C 0.195 3.805 12 N -0.729 5.729 13 C -0.197 4.197 14 H 0.046 0.954 15 C -0.066 4.066 16 N -0.991 5.991 17 Si 0.945 3.055 18 H -0.286 1.286 19 H -0.308 1.308 20 H -0.238 1.238 21 C -0.116 4.116 22 C -0.108 4.108 23 C -0.109 4.109 24 C -0.115 4.115 25 C -0.112 4.112 26 O -0.380 6.380 27 C 0.060 3.940 28 C -0.142 4.142 29 H 0.090 0.910 30 H 0.122 0.878 31 H 0.062 0.938 32 H 0.078 0.922 33 H 0.072 0.928 34 H 0.114 0.886 35 H 0.124 0.876 36 H 0.406 0.594 37 H 0.064 0.936 38 H 0.022 0.978 39 H 0.367 0.633 40 H 0.252 0.748 41 H 0.073 0.927 42 H 0.028 0.972 43 H 0.043 0.957 44 H 0.056 0.944 45 H 0.065 0.935 46 H 0.074 0.926 47 H 0.047 0.953 48 H 0.083 0.917 49 H 0.069 0.931 50 H 0.087 0.913 51 H 0.054 0.946 52 H 0.029 0.971 53 H 0.087 0.913 54 H 0.048 0.952 55 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.811 14.576 10.829 20.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.154 4.154 3 C -0.165 4.165 4 C 0.085 3.915 5 H 0.065 0.935 6 C -0.170 4.170 7 C 0.294 3.706 8 O -0.466 6.466 9 N -0.350 5.350 10 C 0.002 3.998 11 C 0.105 3.895 12 N -0.373 5.373 13 C -0.328 4.328 14 H 0.064 0.936 15 C -0.256 4.256 16 N -0.642 5.642 17 Si 0.773 3.227 18 H -0.213 1.213 19 H -0.235 1.235 20 H -0.161 1.161 21 C -0.156 4.156 22 C -0.146 4.146 23 C -0.146 4.146 24 C -0.153 4.153 25 C -0.149 4.149 26 O -0.299 6.299 27 C -0.017 4.017 28 C -0.199 4.199 29 H 0.109 0.891 30 H 0.140 0.860 31 H 0.081 0.919 32 H 0.096 0.904 33 H 0.091 0.909 34 H 0.132 0.868 35 H 0.142 0.858 36 H 0.242 0.758 37 H 0.082 0.918 38 H 0.041 0.959 39 H 0.201 0.799 40 H 0.060 0.940 41 H 0.092 0.908 42 H 0.047 0.953 43 H 0.062 0.938 44 H 0.075 0.925 45 H 0.084 0.916 46 H 0.093 0.907 47 H 0.066 0.934 48 H 0.102 0.898 49 H 0.088 0.912 50 H 0.105 0.895 51 H 0.072 0.928 52 H 0.048 0.952 53 H 0.106 0.894 54 H 0.067 0.933 55 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 9.787 13.944 11.520 20.566 hybrid contribution -1.222 -0.085 -1.331 1.809 sum 8.565 13.859 10.189 19.216 Atomic orbital electron populations 1.23924 0.95045 1.02810 1.00127 1.22272 0.95703 0.96291 1.01180 1.20724 1.00096 0.93023 1.02635 1.20700 0.90478 0.94137 0.86163 0.93502 1.21806 1.01897 0.94669 0.98620 1.20993 0.78342 0.89664 0.81586 1.90627 1.62742 1.54453 1.38730 1.45679 1.50859 1.17509 1.20968 1.21590 0.95582 0.84113 0.98537 1.20008 0.88782 0.95083 0.85590 1.42683 1.22312 1.40988 1.31288 1.18702 0.94414 1.06040 1.13635 0.93594 1.25400 0.96121 1.01932 1.02133 1.69907 1.10972 1.43584 1.39776 0.85562 0.76539 0.81060 0.79529 1.21297 1.23543 1.16125 1.21787 0.98760 0.96796 0.98211 1.21333 0.97408 0.98883 0.96942 1.21477 0.96844 0.94226 1.02089 1.21510 0.99828 0.97375 0.96565 1.21744 0.96141 0.98069 0.98982 1.87838 1.39090 1.83275 1.19701 1.22488 0.97232 0.96547 0.85426 1.21692 0.98480 1.02936 0.96755 0.89117 0.86001 0.91884 0.90367 0.90914 0.86833 0.85814 0.75831 0.91828 0.95926 0.79851 0.93956 0.90802 0.95328 0.93847 0.92532 0.91642 0.90741 0.93438 0.89841 0.91203 0.89473 0.92801 0.95248 0.89435 0.93293 0.91245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.62 13.95 67.78 0.95 -2.68 16 2 C -0.15 -3.33 5.04 -16.49 -0.08 -3.42 16 3 C -0.11 -1.83 9.69 71.23 0.69 -1.14 16 4 C 0.14 3.97 1.78 29.85 0.05 4.02 16 5 H 0.05 1.51 7.25 -2.38 -0.02 1.49 16 6 C -0.13 -3.53 5.24 29.85 0.16 -3.38 16 7 C 0.51 18.07 7.71 87.66 0.68 18.75 16 8 O -0.58 -25.37 15.42 10.77 0.17 -25.21 16 9 N -0.70 -23.71 5.14 -463.06 -2.38 -26.09 16 10 C 0.13 4.69 4.30 86.38 0.37 5.06 16 11 C 0.20 6.50 0.40 3.60 0.00 6.50 16 12 N -0.73 -29.67 3.36 -303.34 -1.02 -30.69 16 13 C -0.20 -10.45 9.20 84.03 0.77 -9.67 16 14 H 0.05 2.83 6.99 -2.91 -0.02 2.81 16 15 C -0.07 -3.72 5.50 84.86 0.47 -3.25 16 16 N -0.99 -63.19 13.97 21.65 0.30 -62.88 16 17 Si 0.94 43.20 27.67 68.60 1.90 45.09 16 18 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 19 H -0.31 -14.78 7.11 99.48 0.71 -14.07 16 20 H -0.24 -9.16 6.62 99.48 0.66 -8.50 16 21 C -0.12 -3.86 4.58 30.60 0.14 -3.72 16 22 C -0.11 -3.30 5.77 30.60 0.18 -3.13 16 23 C -0.11 -2.51 5.92 30.59 0.18 -2.33 16 24 C -0.12 -2.64 5.75 30.61 0.18 -2.46 16 25 C -0.11 -2.72 4.66 30.61 0.14 -2.58 16 26 O -0.38 -11.03 9.01 -135.18 -1.22 -12.24 16 27 C 0.06 1.53 6.46 71.98 0.46 2.00 16 28 C -0.14 -2.94 10.28 71.98 0.74 -2.20 16 29 H 0.09 1.93 7.84 -2.91 -0.02 1.91 16 30 H 0.12 1.88 8.05 -2.91 -0.02 1.86 16 31 H 0.06 1.12 7.50 -2.38 -0.02 1.11 16 32 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.11 2.89 8.14 -2.39 -0.02 2.87 16 35 H 0.12 2.68 7.66 -2.39 -0.02 2.67 16 36 H 0.41 12.17 7.27 -92.71 -0.67 11.50 16 37 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 38 H 0.02 1.04 7.54 -2.39 -0.02 1.02 16 39 H 0.37 14.23 4.43 -92.71 -0.41 13.82 16 40 H 0.25 15.50 8.31 -92.71 -0.77 14.73 16 41 H 0.07 2.07 8.14 -2.38 -0.02 2.05 16 42 H 0.03 1.16 7.21 -2.39 -0.02 1.14 16 43 H 0.04 1.62 7.60 -2.39 -0.02 1.60 16 44 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 45 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 46 H 0.07 1.46 8.14 -2.38 -0.02 1.44 16 47 H 0.05 1.27 6.84 -2.39 -0.02 1.25 16 48 H 0.08 1.48 8.14 -2.38 -0.02 1.46 16 49 H 0.07 1.58 7.11 -2.39 -0.02 1.56 16 50 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 51 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 52 H 0.03 0.88 8.08 -2.39 -0.02 0.86 16 53 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 54 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 55 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 Total: -1.00 -72.95 425.32 3.54 -69.40 By element: Atomic # 1 Polarization: 46.52 SS G_CDS: -0.28 Total: 46.24 kcal Atomic # 6 Polarization: -9.70 SS G_CDS: 6.07 Total: -3.63 kcal Atomic # 7 Polarization: -116.57 SS G_CDS: -3.10 Total: -119.66 kcal Atomic # 8 Polarization: -36.40 SS G_CDS: -1.05 Total: -37.45 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 1.90 Total: 45.09 kcal Total: -72.95 3.54 -69.40 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115559952.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.638 kcal (2) G-P(sol) polarization free energy of solvation -72.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds