Wall clock time and date at job start Tue Mar 31 2020 22:36:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42904 * 113.99998 * 2 1 4 4 C 1.52993 * 109.47376 * 180.02562 * 3 2 1 5 5 C 1.50708 * 110.43147 * 300.70336 * 4 3 2 6 6 O 1.21286 * 119.99490 * 239.29988 * 5 4 3 7 7 N 1.34771 * 120.00477 * 59.29960 * 5 4 3 8 8 C 1.46496 * 120.00257 * 180.02562 * 7 5 4 9 9 C 1.53002 * 109.47148 * 185.58721 * 8 7 5 10 10 N 1.46503 * 109.47033 * 303.61734 * 9 8 7 11 11 C 1.36937 * 119.99971 * 302.82158 * 10 9 8 12 12 H 1.07995 * 119.99927 * 355.13355 * 11 10 9 13 13 C 1.38811 * 119.99992 * 175.13616 * 11 10 9 14 14 N 1.31625 * 119.99925 * 359.97438 * 13 11 10 15 15 Si 1.86795 * 120.00161 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.47228 * 0.02562 * 15 13 11 17 17 H 1.48503 * 109.46967 * 120.00212 * 15 13 11 18 18 H 1.48493 * 109.47365 * 240.00065 * 15 13 11 19 19 C 1.52998 * 109.47238 * 63.61856 * 9 8 7 20 20 C 1.53002 * 109.47238 * 180.02562 * 19 9 8 21 21 C 1.52999 * 109.47043 * 300.00224 * 20 19 9 22 22 C 1.52998 * 109.47287 * 59.99806 * 21 20 19 23 23 C 1.52999 * 109.47043 * 183.62080 * 9 8 7 24 24 C 1.54891 * 110.48778 * 63.24025 * 4 3 2 25 25 C 1.55237 * 102.58804 * 156.67869 * 24 4 3 26 26 C 1.54270 * 104.22968 * 322.08533 * 25 24 4 27 27 C 1.53879 * 106.59815 * 23.61175 * 26 25 24 28 28 H 1.08998 * 109.47156 * 299.99256 * 1 2 3 29 29 H 1.08998 * 109.47430 * 60.00064 * 1 2 3 30 30 H 1.09002 * 109.47048 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46420 * 59.99754 * 3 2 1 32 32 H 1.08997 * 109.46927 * 300.00427 * 3 2 1 33 33 H 0.97003 * 119.99904 * 0.02562 * 7 5 4 34 34 H 1.08993 * 109.47385 * 65.58681 * 8 7 5 35 35 H 1.09006 * 109.47004 * 305.58543 * 8 7 5 36 36 H 0.96995 * 119.99553 * 122.82054 * 10 9 8 37 37 H 0.96995 * 119.99893 * 179.97438 * 14 13 11 38 38 H 1.09002 * 109.46920 * 59.99721 * 19 9 8 39 39 H 1.09000 * 109.47078 * 300.00155 * 19 9 8 40 40 H 1.08998 * 109.46690 * 180.02562 * 20 19 9 41 41 H 1.08999 * 109.46886 * 59.99979 * 20 19 9 42 42 H 1.08999 * 109.47049 * 180.02562 * 21 20 19 43 43 H 1.09002 * 109.46852 * 300.00118 * 21 20 19 44 44 H 1.08999 * 109.47200 * 59.99904 * 22 21 20 45 45 H 1.09000 * 109.47078 * 179.97438 * 22 21 20 46 46 H 1.08999 * 109.47080 * 299.99636 * 23 9 8 47 47 H 1.09001 * 109.47678 * 59.99591 * 23 9 8 48 48 H 1.08997 * 110.75855 * 275.07142 * 24 4 3 49 49 H 1.08999 * 110.75399 * 38.43937 * 24 4 3 50 50 H 1.08997 * 110.46894 * 203.39614 * 25 24 4 51 51 H 1.09002 * 110.46786 * 80.77519 * 25 24 4 52 52 H 1.08995 * 110.02982 * 264.32398 * 26 25 24 53 53 H 1.09002 * 110.03060 * 142.89938 * 26 25 24 54 54 H 1.08999 * 110.03010 * 240.71266 * 27 26 25 55 55 H 1.09000 * 110.02695 * 119.28264 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 6 4.0035 0.4242 1.2133 6 8 4.7617 0.9479 2.0019 7 7 3.5795 -0.8379 1.4227 8 6 4.0341 -1.5769 2.6031 9 6 3.5233 -3.0174 2.5309 10 7 2.0638 -3.0121 2.4034 11 6 1.2962 -2.3860 3.3489 12 1 1.7600 -1.9645 4.2283 13 6 -0.0781 -2.2932 3.1769 14 7 -0.6433 -2.8066 2.1047 15 14 -1.1253 -1.4398 4.4669 16 1 -0.2554 -0.9518 5.5670 17 1 -1.8327 -0.2897 3.8485 18 1 -2.1204 -2.3987 5.0103 19 6 4.1388 -3.7165 1.3171 20 6 3.6275 -5.1567 1.2445 21 6 4.0248 -5.9038 2.5192 22 6 3.4093 -5.2047 3.7330 23 6 3.9212 -3.7641 3.8056 24 6 4.0238 0.4910 -1.2965 25 6 5.4893 0.9890 -1.4153 26 6 5.4299 2.4575 -0.9465 27 6 4.1876 2.5819 -0.0470 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6885 1.8463 0.8900 32 1 1.6886 1.8464 -0.8899 33 1 2.9734 -1.2569 0.7919 34 1 3.6467 -1.0988 3.5027 35 1 5.1237 -1.5789 2.6332 36 1 1.6414 -3.4522 1.6493 37 1 -1.6036 -2.7421 1.9847 38 1 5.2246 -3.7203 1.4119 39 1 3.8553 -3.1845 0.4089 40 1 4.0663 -5.6549 0.3800 41 1 2.5416 -5.1524 1.1494 42 1 3.6610 -6.9300 2.4673 43 1 5.1107 -5.9081 2.6143 44 1 2.3235 -5.2004 3.6379 45 1 3.6921 -5.7372 4.6410 46 1 5.0070 -3.7680 3.9005 47 1 3.4827 -3.2660 4.6704 48 1 3.9890 -0.5933 -1.1909 49 1 3.4345 0.8157 -2.1541 50 1 5.8285 0.9321 -2.4495 51 1 6.1433 0.4073 -0.7657 52 1 5.3361 3.1205 -1.8065 53 1 6.3275 2.7052 -0.3798 54 1 3.4909 3.3053 -0.4706 55 1 4.4823 2.8899 0.9562 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001115564417.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:36:42 Heat of formation + Delta-G solvation = -112.997786 kcal Electronic energy + Delta-G solvation = -33372.063460 eV Core-core repulsion = 29407.345822 eV Total energy + Delta-G solvation = -3964.717637 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.54571 -40.18637 -38.62144 -37.63896 -35.79080 -34.93604 -32.80337 -31.73287 -31.51325 -30.16559 -29.55482 -27.53221 -26.74880 -25.60379 -25.16169 -23.63493 -22.99475 -21.70347 -21.23730 -20.27785 -19.67807 -18.92838 -18.04106 -17.15001 -17.01648 -16.80538 -16.46635 -16.37482 -16.05873 -15.84288 -15.59090 -15.36943 -15.04932 -14.90114 -14.72374 -14.33186 -14.15597 -14.03403 -13.46112 -13.36100 -13.25688 -13.18503 -12.90018 -12.83491 -12.59745 -12.50012 -12.42017 -12.30246 -12.15760 -12.00229 -11.98417 -11.92046 -11.89708 -11.65416 -11.61770 -11.29179 -11.18551 -11.11382 -10.78869 -10.69471 -10.61831 -10.40425 -9.73127 -8.79192 -7.77030 -4.99575 1.40962 1.46825 1.50783 1.77335 2.48029 2.62775 2.82886 3.53915 3.57696 3.65328 3.84515 3.87584 3.98275 4.06088 4.10243 4.17076 4.27674 4.31730 4.41612 4.48935 4.50573 4.54304 4.56628 4.58946 4.65441 4.68109 4.77594 4.77803 4.78800 4.82445 4.84229 4.93127 4.98084 4.99600 5.09011 5.10121 5.15397 5.17354 5.20671 5.23188 5.30383 5.32861 5.48431 5.50011 5.51800 5.53753 5.62670 5.68325 5.81354 5.82327 6.29426 6.43920 6.89349 7.49374 7.54190 8.24733 8.53674 9.44226 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.009714 B = 0.005455 C = 0.004146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2881.835590 B = 5131.863660 C = 6751.301008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.055 3.945 2 O -0.390 6.390 3 C 0.074 3.926 4 C -0.080 4.080 5 C 0.516 3.484 6 O -0.598 6.598 7 N -0.684 5.684 8 C 0.122 3.878 9 C 0.191 3.809 10 N -0.702 5.702 11 C -0.202 4.202 12 H 0.050 0.950 13 C -0.045 4.045 14 N -0.941 5.941 15 Si 0.928 3.072 16 H -0.289 1.289 17 H -0.300 1.300 18 H -0.299 1.299 19 C -0.106 4.106 20 C -0.111 4.111 21 C -0.107 4.107 22 C -0.104 4.104 23 C -0.116 4.116 24 C -0.097 4.097 25 C -0.123 4.123 26 C -0.114 4.114 27 C -0.105 4.105 28 H 0.014 0.986 29 H 0.059 0.941 30 H 0.080 0.920 31 H 0.030 0.970 32 H 0.088 0.912 33 H 0.414 0.586 34 H 0.024 0.976 35 H 0.058 0.942 36 H 0.378 0.622 37 H 0.245 0.755 38 H 0.078 0.922 39 H 0.055 0.945 40 H 0.075 0.925 41 H 0.045 0.955 42 H 0.062 0.938 43 H 0.071 0.929 44 H 0.043 0.957 45 H 0.057 0.943 46 H 0.068 0.932 47 H 0.035 0.965 48 H 0.062 0.938 49 H 0.099 0.901 50 H 0.092 0.908 51 H 0.045 0.955 52 H 0.090 0.910 53 H 0.056 0.944 54 H 0.092 0.908 55 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.228 3.231 -10.583 15.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 O -0.309 6.309 3 C -0.003 4.003 4 C -0.083 4.083 5 C 0.303 3.697 6 O -0.481 6.481 7 N -0.334 5.334 8 C -0.004 4.004 9 C 0.100 3.900 10 N -0.342 5.342 11 C -0.334 4.334 12 H 0.068 0.932 13 C -0.238 4.238 14 N -0.592 5.592 15 Si 0.762 3.238 16 H -0.215 1.215 17 H -0.227 1.227 18 H -0.227 1.227 19 C -0.144 4.144 20 C -0.148 4.148 21 C -0.144 4.144 22 C -0.142 4.142 23 C -0.156 4.156 24 C -0.135 4.135 25 C -0.160 4.160 26 C -0.151 4.151 27 C -0.143 4.143 28 H 0.033 0.967 29 H 0.078 0.922 30 H 0.099 0.901 31 H 0.048 0.952 32 H 0.106 0.894 33 H 0.253 0.747 34 H 0.042 0.958 35 H 0.076 0.924 36 H 0.212 0.788 37 H 0.054 0.946 38 H 0.096 0.904 39 H 0.074 0.926 40 H 0.093 0.907 41 H 0.064 0.936 42 H 0.081 0.919 43 H 0.090 0.910 44 H 0.062 0.938 45 H 0.076 0.924 46 H 0.087 0.913 47 H 0.054 0.946 48 H 0.081 0.919 49 H 0.117 0.883 50 H 0.111 0.889 51 H 0.063 0.937 52 H 0.109 0.891 53 H 0.075 0.925 54 H 0.110 0.890 55 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 10.792 3.488 -9.880 15.042 hybrid contribution -1.910 0.556 1.197 2.322 sum 8.882 4.044 -8.684 13.063 Atomic orbital electron populations 1.22557 0.79826 1.03085 0.98691 1.87769 1.20631 1.27232 1.95285 1.22563 0.91076 0.85714 1.00976 1.21728 0.94371 0.97708 0.94510 1.20753 0.79853 0.81969 0.87132 1.90577 1.38963 1.69351 1.49202 1.45874 1.47718 1.13785 1.26044 1.21656 0.97129 0.94214 0.87425 1.19977 0.84530 0.90463 0.94997 1.42361 0.99482 1.64460 1.27947 1.19054 0.88947 1.26240 0.99176 0.93178 1.24853 0.97320 1.03098 0.98548 1.69724 1.09160 1.52148 1.28175 0.85756 0.79733 0.78143 0.80159 1.21451 1.22749 1.22737 1.21627 1.00243 0.95996 0.96509 1.21430 1.00459 0.94814 0.98137 1.21447 1.00584 0.98413 0.93982 1.21303 1.00207 0.94681 0.98006 1.21827 0.99591 0.96443 0.97701 1.22567 0.96616 0.99625 0.94663 1.22437 0.95702 0.95871 1.02025 1.22059 0.96826 0.97086 0.99176 1.22079 0.97819 0.93250 1.01124 0.96705 0.92215 0.90107 0.95179 0.89374 0.74675 0.95790 0.92416 0.78751 0.94592 0.90351 0.92617 0.90674 0.93581 0.91880 0.90988 0.93774 0.92388 0.91344 0.94621 0.91881 0.88264 0.88908 0.93650 0.89111 0.92506 0.88976 0.92419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.89 11.01 113.37 1.25 3.14 16 2 O -0.39 -13.54 8.01 -148.98 -1.19 -14.73 16 3 C 0.07 2.14 4.70 71.98 0.34 2.48 16 4 C -0.08 -2.29 0.60 -51.86 -0.03 -2.32 16 5 C 0.52 19.37 6.30 87.66 0.55 19.93 16 6 O -0.60 -26.12 15.42 -3.05 -0.05 -26.17 16 7 N -0.68 -25.97 4.53 -463.06 -2.10 -28.07 16 8 C 0.12 4.80 4.31 86.38 0.37 5.17 16 9 C 0.19 6.95 0.41 3.60 0.00 6.95 16 10 N -0.70 -30.94 3.54 -303.35 -1.07 -32.01 16 11 C -0.20 -10.34 8.70 84.03 0.73 -9.61 16 12 H 0.05 2.71 6.74 -2.91 -0.02 2.69 16 13 C -0.04 -2.38 5.50 84.86 0.47 -1.91 16 14 N -0.94 -51.18 13.06 21.65 0.28 -50.89 16 15 Si 0.93 45.65 29.55 68.60 2.03 47.68 16 16 H -0.29 -14.27 7.11 99.48 0.71 -13.56 16 17 H -0.30 -14.82 7.11 99.48 0.71 -14.11 16 18 H -0.30 -14.86 7.11 99.48 0.71 -14.15 16 19 C -0.11 -3.17 4.65 30.59 0.14 -3.02 16 20 C -0.11 -3.12 5.75 30.59 0.18 -2.95 16 21 C -0.11 -2.82 5.92 30.59 0.18 -2.64 16 22 C -0.10 -3.37 5.77 30.61 0.18 -3.19 16 23 C -0.12 -3.99 4.61 30.61 0.14 -3.85 16 24 C -0.10 -2.24 5.60 32.01 0.18 -2.06 16 25 C -0.12 -2.54 6.62 31.79 0.21 -2.33 16 26 C -0.11 -2.31 6.80 31.32 0.21 -2.09 16 27 C -0.10 -2.59 5.75 31.32 0.18 -2.41 16 28 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 29 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 30 H 0.08 3.23 8.14 -2.39 -0.02 3.21 16 31 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 33 H 0.41 15.90 5.11 -92.71 -0.47 15.43 16 34 H 0.02 1.10 7.35 -2.39 -0.02 1.08 16 35 H 0.06 2.14 8.13 -2.38 -0.02 2.12 16 36 H 0.38 17.95 6.43 -92.71 -0.60 17.35 16 37 H 0.24 13.24 8.31 -92.71 -0.77 12.47 16 38 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 39 H 0.06 1.71 7.21 -2.39 -0.02 1.69 16 40 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 41 H 0.05 1.56 6.80 -2.39 -0.02 1.55 16 42 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 43 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 44 H 0.04 1.75 7.60 -2.39 -0.02 1.73 16 45 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 46 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 47 H 0.03 1.40 7.34 -2.39 -0.02 1.38 16 48 H 0.06 1.61 7.63 -2.39 -0.02 1.59 16 49 H 0.10 1.85 8.06 -2.39 -0.02 1.83 16 50 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 51 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 52 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 53 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 54 H 0.09 1.78 7.83 -2.39 -0.02 1.76 16 55 H 0.06 1.76 6.86 -2.39 -0.02 1.74 16 Total: -1.00 -61.51 411.98 2.97 -58.54 By element: Atomic # 1 Polarization: 46.60 SS G_CDS: -0.21 Total: 46.39 kcal Atomic # 6 Polarization: -6.01 SS G_CDS: 5.28 Total: -0.73 kcal Atomic # 7 Polarization: -108.09 SS G_CDS: -2.89 Total: -110.98 kcal Atomic # 8 Polarization: -39.66 SS G_CDS: -1.24 Total: -40.90 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 2.03 Total: 47.68 kcal Total: -61.51 2.97 -58.54 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115564417.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.460 kcal (2) G-P(sol) polarization free energy of solvation -61.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds