Wall clock time and date at job start Tue Mar 31 2020 22:54:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42902 * 114.00155 * 2 1 4 4 H 1.09006 * 109.46319 * 330.00421 * 3 2 1 5 5 C 1.52991 * 109.46883 * 89.99872 * 3 2 1 6 6 C 1.53004 * 109.46919 * 179.97438 * 5 3 2 7 7 C 1.52992 * 109.47470 * 300.00409 * 6 5 3 8 8 C 1.53004 * 109.47159 * 60.00052 * 7 6 5 9 9 H 1.08996 * 109.46976 * 59.99451 * 8 7 6 10 10 C 1.50697 * 109.47236 * 180.02562 * 8 7 6 11 11 O 1.21283 * 119.99799 * 119.99430 * 10 8 7 12 12 N 1.34773 * 120.00087 * 299.99771 * 10 8 7 13 13 C 1.46501 * 120.00203 * 180.02562 * 12 10 8 14 14 C 1.53001 * 109.47115 * 177.69054 * 13 12 10 15 15 N 1.46493 * 109.47210 * 54.61115 * 14 13 12 16 16 C 1.36941 * 119.99962 * 59.73141 * 15 14 13 17 17 H 1.08000 * 120.00029 * 4.90935 * 16 15 14 18 18 C 1.38805 * 119.99907 * 184.90234 * 16 15 14 19 19 N 1.31631 * 119.99994 * 179.97438 * 18 16 15 20 20 Si 1.86797 * 120.00398 * 0.02562 * 18 16 15 21 21 H 1.48506 * 109.47293 * 89.99512 * 20 18 16 22 22 H 1.48498 * 109.47515 * 209.99838 * 20 18 16 23 23 H 1.48501 * 109.47113 * 329.99905 * 20 18 16 24 24 C 1.53003 * 109.46721 * 294.61256 * 14 13 12 25 25 C 1.52996 * 109.46857 * 180.02562 * 24 14 13 26 26 C 1.52998 * 109.47373 * 59.99904 * 25 24 14 27 27 C 1.53001 * 109.47355 * 300.00240 * 26 25 24 28 28 C 1.52996 * 109.47076 * 59.99578 * 27 26 25 29 29 C 1.52995 * 109.47174 * 210.00485 * 3 2 1 30 30 H 1.08995 * 109.47048 * 299.99548 * 1 2 3 31 31 H 1.08994 * 109.47545 * 60.00179 * 1 2 3 32 32 H 1.09004 * 109.46509 * 179.97438 * 1 2 3 33 33 H 1.09008 * 109.47233 * 60.00542 * 5 3 2 34 34 H 1.08996 * 109.47814 * 300.00521 * 5 3 2 35 35 H 1.09007 * 109.47168 * 179.97438 * 6 5 3 36 36 H 1.09005 * 109.46544 * 60.01029 * 6 5 3 37 37 H 1.08998 * 109.47162 * 300.00137 * 7 6 5 38 38 H 1.09005 * 109.47335 * 179.97438 * 7 6 5 39 39 H 0.97004 * 119.99893 * 359.97438 * 12 10 8 40 40 H 1.08999 * 109.47223 * 57.68551 * 13 12 10 41 41 H 1.08997 * 109.46936 * 297.68868 * 13 12 10 42 42 H 0.96996 * 120.00645 * 239.72615 * 15 14 13 43 43 H 0.97002 * 119.99975 * 180.02562 * 19 18 16 44 44 H 1.08997 * 109.47019 * 300.00242 * 24 14 13 45 45 H 1.08998 * 109.47225 * 60.00667 * 24 14 13 46 46 H 1.09003 * 109.47236 * 180.02562 * 25 24 14 47 47 H 1.09007 * 109.47340 * 299.99743 * 25 24 14 48 48 H 1.08998 * 109.47461 * 179.97438 * 26 25 24 49 49 H 1.08998 * 109.47414 * 60.00121 * 26 25 24 50 50 H 1.09007 * 109.46569 * 299.99678 * 27 26 25 51 51 H 1.08995 * 109.47528 * 179.97438 * 27 26 25 52 52 H 1.09003 * 109.47236 * 180.02562 * 28 27 26 53 53 H 1.08997 * 109.47247 * 60.00526 * 28 27 26 54 54 H 1.09000 * 109.47364 * 60.00132 * 29 3 2 55 55 H 1.08998 * 109.46864 * 299.99498 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3449 1.9993 -0.5138 5 6 2.2177 1.7713 1.4424 6 6 2.8406 3.1688 1.4424 7 6 4.1893 3.1260 0.7214 8 6 3.9818 2.6602 -0.7212 9 1 3.3168 3.3543 -1.2350 10 6 5.3103 2.6175 -1.4313 11 8 5.7183 1.5724 -1.8919 12 7 6.0450 3.7406 -1.5543 13 6 7.3363 3.6992 -2.2451 14 6 7.9331 5.1072 -2.2955 15 7 8.0054 5.6557 -0.9391 16 6 8.7414 5.0137 0.0207 17 1 9.3320 4.1481 -0.2407 18 6 8.7284 5.4755 1.3297 19 7 9.4355 4.8580 2.2525 20 14 7.7065 6.9722 1.7821 21 1 6.3442 6.5385 2.1840 22 1 8.3512 7.6889 2.9116 23 1 7.6114 7.8793 0.6101 24 6 7.0483 6.0053 -3.1624 25 6 7.6454 7.4130 -3.2134 26 6 9.0511 7.3494 -3.8139 27 6 9.9359 6.4512 -2.9471 28 6 9.3388 5.0435 -2.8962 29 6 3.3589 1.2633 -0.7213 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3632 -1.0277 -0.0005 33 1 2.8830 1.0774 1.9563 34 1 1.2569 1.8013 1.9564 35 1 2.9880 3.5009 2.4702 36 1 2.1756 3.8629 0.9286 37 1 4.8542 2.4319 1.2353 38 1 4.6329 4.1217 0.7210 39 1 5.7185 4.5766 -1.1862 40 1 7.1936 3.3285 -3.2602 41 1 8.0145 3.0362 -1.7081 42 1 7.5321 6.4737 -0.7208 43 1 9.4261 5.1805 3.1672 44 1 6.9944 5.5971 -4.1716 45 1 6.0467 6.0504 -2.7347 46 1 7.0148 8.0531 -3.8306 47 1 7.6995 7.8215 -2.2042 48 1 9.4763 8.3524 -3.8506 49 1 8.9970 6.9410 -4.8231 50 1 9.9901 6.8597 -1.9379 51 1 10.9372 6.4055 -3.3752 52 1 9.9689 4.4037 -2.2783 53 1 9.2846 4.6351 -3.9053 54 1 3.2110 0.9314 -1.7490 55 1 4.0241 0.5694 -0.2075 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001115697786.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:54:02 Heat of formation + Delta-G solvation = -124.063783 kcal Electronic energy + Delta-G solvation = -31863.400285 eV Core-core repulsion = 27898.202791 eV Total energy + Delta-G solvation = -3965.197495 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.39819 -40.35325 -39.39853 -37.17052 -35.94325 -35.06891 -33.13287 -32.09011 -31.60273 -31.21537 -30.51459 -27.30296 -26.92416 -25.39184 -24.37252 -23.41920 -23.32930 -21.83384 -21.39192 -20.74266 -19.78521 -19.68229 -18.43780 -17.29607 -16.87661 -16.54824 -16.45669 -16.27951 -16.18481 -15.99646 -15.52796 -15.37063 -15.05337 -14.93674 -14.78003 -14.55099 -14.29389 -14.10684 -13.89789 -13.62016 -13.43730 -13.38176 -13.13009 -12.94843 -12.81202 -12.67715 -12.61260 -12.39489 -12.34233 -12.06035 -12.04557 -11.91800 -11.69193 -11.68274 -11.50716 -11.49266 -11.28546 -11.19035 -10.89454 -10.74713 -10.68407 -10.36518 -9.89643 -9.23438 -7.91349 -5.24931 1.39365 1.44070 1.51450 1.69308 2.29696 2.55106 2.86234 3.39620 3.53527 3.61524 3.68471 3.86259 3.88571 3.94909 4.06124 4.07701 4.12726 4.21731 4.32474 4.36056 4.41108 4.42628 4.44516 4.54552 4.56588 4.62141 4.62718 4.72223 4.74510 4.77397 4.87080 4.88351 4.93580 4.95036 5.02345 5.05325 5.09655 5.15614 5.16683 5.19859 5.21984 5.26544 5.39955 5.42180 5.42840 5.48749 5.56293 5.65364 5.72893 5.90650 6.31344 6.32534 6.68281 7.18679 7.34681 7.91458 8.13066 9.30821 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.012368 B = 0.003564 C = 0.003092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2263.287549 B = 7854.875799 C = 9054.722701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.413 6.413 3 C 0.096 3.904 4 H 0.087 0.913 5 C -0.139 4.139 6 C -0.106 4.106 7 C -0.114 4.114 8 C -0.089 4.089 9 H 0.132 0.868 10 C 0.507 3.493 11 O -0.594 6.594 12 N -0.695 5.695 13 C 0.125 3.875 14 C 0.196 3.804 15 N -0.730 5.730 16 C -0.198 4.198 17 H 0.046 0.954 18 C -0.064 4.064 19 N -0.990 5.990 20 Si 0.945 3.055 21 H -0.272 1.272 22 H -0.311 1.311 23 H -0.247 1.247 24 C -0.111 4.111 25 C -0.115 4.115 26 C -0.109 4.109 27 C -0.108 4.108 28 C -0.117 4.117 29 C -0.090 4.090 30 H 0.052 0.948 31 H 0.053 0.947 32 H 0.092 0.908 33 H 0.050 0.950 34 H 0.083 0.917 35 H 0.072 0.928 36 H 0.093 0.907 37 H 0.039 0.961 38 H 0.070 0.930 39 H 0.407 0.593 40 H 0.067 0.933 41 H 0.021 0.979 42 H 0.368 0.632 43 H 0.251 0.749 44 H 0.087 0.913 45 H 0.071 0.929 46 H 0.083 0.917 47 H 0.046 0.954 48 H 0.064 0.936 49 H 0.074 0.926 50 H 0.043 0.957 51 H 0.055 0.945 52 H 0.028 0.972 53 H 0.074 0.926 54 H 0.066 0.934 55 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.757 3.409 -10.475 21.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.332 6.332 3 C 0.039 3.961 4 H 0.105 0.895 5 C -0.177 4.177 6 C -0.144 4.144 7 C -0.152 4.152 8 C -0.110 4.110 9 H 0.150 0.850 10 C 0.295 3.705 11 O -0.476 6.476 12 N -0.344 5.344 13 C -0.002 4.002 14 C 0.106 3.894 15 N -0.374 5.374 16 C -0.329 4.329 17 H 0.064 0.936 18 C -0.254 4.254 19 N -0.642 5.642 20 Si 0.773 3.227 21 H -0.198 1.198 22 H -0.239 1.239 23 H -0.171 1.171 24 C -0.149 4.149 25 C -0.153 4.153 26 C -0.146 4.146 27 C -0.145 4.145 28 C -0.157 4.157 29 C -0.129 4.129 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.110 0.890 33 H 0.069 0.931 34 H 0.102 0.898 35 H 0.091 0.909 36 H 0.111 0.889 37 H 0.058 0.942 38 H 0.089 0.911 39 H 0.243 0.757 40 H 0.086 0.914 41 H 0.039 0.961 42 H 0.203 0.797 43 H 0.060 0.940 44 H 0.105 0.895 45 H 0.090 0.910 46 H 0.101 0.899 47 H 0.065 0.935 48 H 0.083 0.917 49 H 0.093 0.907 50 H 0.061 0.939 51 H 0.074 0.926 52 H 0.047 0.953 53 H 0.092 0.908 54 H 0.085 0.915 55 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -18.228 2.380 -10.725 21.283 hybrid contribution 0.336 0.704 1.426 1.626 sum -17.892 3.084 -9.299 20.398 Atomic orbital electron populations 1.22981 0.79506 1.03668 1.01024 1.87904 1.21517 1.28597 1.95211 1.22114 0.93812 0.84593 0.95604 0.89486 1.22036 1.01773 0.97019 0.96844 1.21452 0.94891 0.96812 1.01216 1.21551 0.99000 1.01301 0.93305 1.21209 0.93278 0.99518 0.96958 0.85016 1.21127 0.87327 0.83022 0.79061 1.90644 1.73717 1.31827 1.51377 1.45699 1.19985 1.11494 1.57263 1.21643 0.84180 0.98993 0.95362 1.19985 0.94218 0.90431 0.84731 1.42730 1.59458 1.28275 1.06936 1.18697 1.18445 1.07682 0.88067 0.93613 1.25382 1.02023 1.02251 0.95773 1.69916 1.47825 1.44458 1.01982 0.85569 0.78919 0.80461 0.77741 1.19832 1.23942 1.17106 1.21735 0.98081 0.95186 0.99910 1.21502 0.96633 0.96341 1.00806 1.21474 0.94995 0.99245 0.98931 1.21327 0.98310 0.95078 0.99817 1.21793 0.96663 0.97547 0.99655 1.21246 0.95523 0.95145 1.00955 0.92905 0.92826 0.88955 0.93140 0.89839 0.90918 0.88881 0.94161 0.91148 0.75667 0.91441 0.96082 0.79727 0.93981 0.89467 0.91016 0.89851 0.93533 0.91725 0.90738 0.93857 0.92590 0.95282 0.90792 0.91492 0.93724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 10.82 113.37 1.23 1.58 16 2 O -0.41 -9.65 10.35 -148.98 -1.54 -11.19 16 3 C 0.10 2.02 2.61 30.59 0.08 2.10 16 4 H 0.09 1.36 7.79 -2.38 -0.02 1.34 16 5 C -0.14 -2.79 5.54 30.59 0.17 -2.62 16 6 C -0.11 -2.06 5.92 30.59 0.18 -1.88 16 7 C -0.11 -3.01 5.10 30.59 0.16 -2.85 16 8 C -0.09 -2.27 2.53 -11.55 -0.03 -2.30 16 9 H 0.13 2.37 8.14 -2.39 -0.02 2.36 16 10 C 0.51 17.51 7.15 87.66 0.63 18.14 16 11 O -0.59 -25.59 15.98 -3.04 -0.05 -25.64 16 12 N -0.69 -22.86 4.99 -463.07 -2.31 -25.18 16 13 C 0.12 4.48 4.31 86.38 0.37 4.85 16 14 C 0.20 6.41 0.40 3.61 0.00 6.41 16 15 N -0.73 -29.17 3.26 -303.35 -0.99 -30.16 16 16 C -0.20 -10.36 9.21 84.03 0.77 -9.59 16 17 H 0.05 2.79 6.98 -2.91 -0.02 2.77 16 18 C -0.06 -3.58 5.50 84.86 0.47 -3.11 16 19 N -0.99 -62.65 13.97 21.65 0.30 -62.35 16 20 Si 0.94 42.47 27.78 68.60 1.91 44.37 16 21 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 22 H -0.31 -14.95 7.11 99.48 0.71 -14.24 16 23 H -0.25 -9.65 6.45 99.48 0.64 -9.01 16 24 C -0.11 -2.64 4.66 30.59 0.14 -2.50 16 25 C -0.12 -2.60 5.75 30.59 0.18 -2.43 16 26 C -0.11 -2.50 5.92 30.59 0.18 -2.32 16 27 C -0.11 -3.28 5.77 30.59 0.18 -3.10 16 28 C -0.12 -3.87 4.57 30.59 0.14 -3.73 16 29 C -0.09 -2.45 4.14 30.58 0.13 -2.33 16 30 H 0.05 0.63 7.87 -2.39 -0.02 0.61 16 31 H 0.05 0.63 8.08 -2.39 -0.02 0.61 16 32 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.05 1.24 8.14 -2.38 -0.02 1.22 16 34 H 0.08 1.33 7.87 -2.39 -0.02 1.31 16 35 H 0.07 1.42 8.14 -2.38 -0.02 1.40 16 36 H 0.09 1.30 8.14 -2.38 -0.02 1.28 16 37 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.07 1.92 7.57 -2.38 -0.02 1.90 16 39 H 0.41 11.95 6.79 -92.71 -0.63 11.32 16 40 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 41 H 0.02 0.95 7.55 -2.39 -0.02 0.93 16 42 H 0.37 13.98 4.35 -92.71 -0.40 13.58 16 43 H 0.25 15.38 8.31 -92.71 -0.77 14.61 16 44 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 45 H 0.07 1.54 7.26 -2.39 -0.02 1.52 16 46 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 47 H 0.05 1.24 6.86 -2.38 -0.02 1.23 16 48 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 49 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 50 H 0.04 1.61 7.61 -2.38 -0.02 1.59 16 51 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 52 H 0.03 1.17 7.19 -2.39 -0.02 1.15 16 53 H 0.07 2.05 8.14 -2.39 -0.02 2.04 16 54 H 0.07 1.89 8.10 -2.39 -0.02 1.87 16 55 H 0.04 1.50 8.10 -2.39 -0.02 1.48 16 Total: -1.00 -73.71 411.02 2.04 -71.67 By element: Atomic # 1 Polarization: 44.36 SS G_CDS: -0.24 Total: 44.12 kcal Atomic # 6 Polarization: -10.63 SS G_CDS: 4.97 Total: -5.66 kcal Atomic # 7 Polarization: -114.68 SS G_CDS: -3.00 Total: -117.68 kcal Atomic # 8 Polarization: -35.24 SS G_CDS: -1.59 Total: -36.83 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 1.91 Total: 44.37 kcal Total: -73.71 2.04 -71.67 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115697786.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.394 kcal (2) G-P(sol) polarization free energy of solvation -73.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds