Wall clock time and date at job start Tue Mar 31 2020 22:54:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42897 * 113.99847 * 2 1 4 4 H 1.09004 * 109.47237 * 329.99936 * 3 2 1 5 5 C 1.53003 * 109.47258 * 90.00226 * 3 2 1 6 6 C 1.52995 * 109.47095 * 180.02562 * 5 3 2 7 7 C 1.52997 * 109.47262 * 299.99804 * 6 5 3 8 8 C 1.52992 * 109.46934 * 60.00614 * 7 6 5 9 9 H 1.09000 * 109.47420 * 180.02562 * 8 7 6 10 10 C 1.50700 * 109.47640 * 59.99786 * 8 7 6 11 11 O 1.21283 * 120.00126 * 237.04030 * 10 8 7 12 12 N 1.34778 * 119.99828 * 57.03810 * 10 8 7 13 13 C 1.46497 * 119.99855 * 184.34582 * 12 10 8 14 14 C 1.53002 * 109.47136 * 184.23271 * 13 12 10 15 15 N 1.46494 * 109.47679 * 54.62170 * 14 13 12 16 16 C 1.36938 * 119.99752 * 56.18900 * 15 14 13 17 17 H 1.08002 * 119.99933 * 5.22281 * 16 15 14 18 18 C 1.38816 * 120.00127 * 185.22591 * 16 15 14 19 19 N 1.31614 * 119.99841 * 354.88450 * 18 16 15 20 20 Si 1.86799 * 119.99963 * 174.88212 * 18 16 15 21 21 H 1.48502 * 109.47091 * 94.99396 * 20 18 16 22 22 H 1.48497 * 109.47134 * 214.99392 * 20 18 16 23 23 H 1.48506 * 109.47224 * 334.99284 * 20 18 16 24 24 C 1.53002 * 109.46592 * 294.62497 * 14 13 12 25 25 C 1.52999 * 109.47183 * 180.02562 * 24 14 13 26 26 C 1.53007 * 109.47320 * 59.99745 * 25 24 14 27 27 C 1.53000 * 109.47017 * 300.00587 * 26 25 24 28 28 C 1.52994 * 109.47237 * 59.99429 * 27 26 25 29 29 C 1.53001 * 109.47058 * 299.99513 * 8 7 6 30 30 H 1.09000 * 109.47103 * 299.99608 * 1 2 3 31 31 H 1.09000 * 109.47422 * 60.00240 * 1 2 3 32 32 H 1.09012 * 109.46625 * 179.97438 * 1 2 3 33 33 H 1.08994 * 109.46809 * 60.00035 * 5 3 2 34 34 H 1.09005 * 109.46854 * 300.00505 * 5 3 2 35 35 H 1.09002 * 109.46683 * 179.97438 * 6 5 3 36 36 H 1.09001 * 109.47256 * 60.00691 * 6 5 3 37 37 H 1.08999 * 109.47284 * 299.99972 * 7 6 5 38 38 H 1.09001 * 109.47083 * 180.02562 * 7 6 5 39 39 H 0.96997 * 119.99772 * 4.33568 * 12 10 8 40 40 H 1.08997 * 109.47320 * 64.22546 * 13 12 10 41 41 H 1.09003 * 109.46641 * 304.22576 * 13 12 10 42 42 H 0.96998 * 120.00585 * 236.19819 * 15 14 13 43 43 H 0.96999 * 120.00080 * 180.02562 * 19 18 16 44 44 H 1.09000 * 109.47702 * 59.99719 * 24 14 13 45 45 H 1.09002 * 109.47064 * 300.00104 * 24 14 13 46 46 H 1.09002 * 109.47000 * 299.99892 * 25 24 14 47 47 H 1.09003 * 109.47190 * 179.97438 * 25 24 14 48 48 H 1.09002 * 109.46965 * 60.00125 * 26 25 24 49 49 H 1.08996 * 109.47348 * 180.02562 * 26 25 24 50 50 H 1.08995 * 109.47092 * 180.02562 * 27 26 25 51 51 H 1.09002 * 109.46876 * 299.99592 * 27 26 25 52 52 H 1.09003 * 109.46873 * 180.02562 * 28 27 26 53 53 H 1.09002 * 109.47054 * 60.00273 * 28 27 26 54 54 H 1.09002 * 109.47096 * 180.02562 * 29 8 7 55 55 H 1.08994 * 109.47289 * 300.00195 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3449 1.9994 -0.5139 5 6 2.2176 1.7714 1.4425 6 6 2.8393 3.1693 1.4425 7 6 4.1879 3.1278 0.7210 8 6 3.9804 2.6620 -0.7214 9 1 4.9412 2.6320 -1.2353 10 6 3.0601 3.6210 -1.4316 11 8 2.0360 3.2153 -1.9392 12 7 3.3750 4.9296 -1.5027 13 6 2.4364 5.8770 -2.1089 14 6 3.0751 7.2664 -2.1590 15 7 4.3640 7.1868 -2.8507 16 6 4.4295 6.6772 -4.1200 17 1 3.5225 6.4126 -4.6431 18 6 5.6617 6.5008 -4.7344 19 7 6.7595 6.9157 -4.1387 20 14 5.7618 5.6744 -6.4067 21 1 5.7774 6.7102 -7.4706 22 1 7.0044 4.8652 -6.4854 23 1 4.5830 4.7906 -6.5934 24 6 3.2920 7.7795 -0.7340 25 6 3.9301 9.1692 -0.7839 26 6 3.0054 10.1284 -1.5362 27 6 2.7885 9.6152 -2.9612 28 6 2.1504 8.2255 -2.9112 29 6 3.3588 1.2640 -0.7215 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0278 -0.0005 33 1 2.8829 1.0775 1.9562 34 1 1.2568 1.8013 1.9564 35 1 2.9867 3.5014 2.4702 36 1 2.1736 3.8630 0.9289 37 1 4.8535 2.4342 1.2347 38 1 4.6309 4.1237 0.7214 39 1 4.2231 5.2440 -1.1524 40 1 1.5249 5.9173 -1.5126 41 1 2.1946 5.5517 -3.1208 42 1 5.1711 7.4949 -2.4096 43 1 7.6205 6.7928 -4.5681 44 1 3.9503 7.0960 -0.1978 45 1 2.3329 7.8388 -0.2193 46 1 4.8891 9.1103 -1.2987 47 1 4.0842 9.5349 0.2313 48 1 2.0464 10.1872 -1.0214 49 1 3.4602 11.1182 -1.5721 50 1 2.1302 10.2987 -3.4972 51 1 3.7475 9.5563 -3.4760 52 1 1.9964 7.8598 -3.9264 53 1 1.1915 8.2844 -2.3963 54 1 3.2113 0.9320 -1.7492 55 1 4.0244 0.5704 -0.2079 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001115697787.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:54:07 Heat of formation + Delta-G solvation = -121.194702 kcal Electronic energy + Delta-G solvation = -32366.218958 eV Core-core repulsion = 28401.145875 eV Total energy + Delta-G solvation = -3965.073082 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.61764 -40.28274 -39.04500 -37.02546 -35.88211 -35.03359 -32.89133 -31.97192 -31.54783 -30.97463 -30.11200 -27.33536 -26.89730 -25.68046 -24.23817 -23.38884 -23.29305 -22.13863 -21.62120 -20.40505 -19.74204 -19.01239 -17.86532 -17.56384 -16.98613 -16.68830 -16.55626 -16.08647 -16.05750 -15.80437 -15.57425 -15.35623 -15.03765 -14.97200 -14.67406 -14.36753 -14.22318 -13.99446 -13.55586 -13.41210 -13.32154 -13.17377 -13.06320 -12.99029 -12.90364 -12.83631 -12.61570 -12.57393 -12.48696 -12.06253 -11.94191 -11.91290 -11.76346 -11.69213 -11.45517 -11.35216 -11.20935 -11.12865 -10.78943 -10.68699 -10.47519 -10.33266 -9.77801 -8.89736 -7.88655 -5.11051 1.41025 1.45413 1.50520 1.78141 2.43102 2.58133 2.80126 3.44601 3.74302 3.75511 3.82218 3.83678 3.92821 4.04907 4.13205 4.16345 4.20994 4.25183 4.39638 4.42288 4.47694 4.49251 4.51999 4.54275 4.64921 4.67989 4.70156 4.77426 4.77809 4.79770 4.82575 4.92586 4.96857 4.98396 5.04771 5.09881 5.10552 5.16331 5.19210 5.22976 5.24359 5.31733 5.42416 5.47846 5.49651 5.52134 5.60375 5.62982 5.75847 5.79800 6.30346 6.35113 6.75907 7.41581 7.44702 8.18037 8.44118 9.33765 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.010755 B = 0.003956 C = 0.003314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2602.774505 B = 7076.888833 C = 8446.162392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.407 6.407 3 C 0.077 3.923 4 H 0.063 0.937 5 C -0.133 4.133 6 C -0.115 4.115 7 C -0.106 4.106 8 C -0.104 4.104 9 H 0.105 0.895 10 C 0.511 3.489 11 O -0.590 6.590 12 N -0.692 5.692 13 C 0.126 3.874 14 C 0.190 3.810 15 N -0.708 5.708 16 C -0.203 4.203 17 H 0.056 0.944 18 C -0.059 4.059 19 N -0.956 5.956 20 Si 0.939 3.061 21 H -0.294 1.294 22 H -0.297 1.297 23 H -0.288 1.288 24 C -0.106 4.106 25 C -0.113 4.113 26 C -0.108 4.108 27 C -0.106 4.106 28 C -0.117 4.117 29 C -0.091 4.091 30 H 0.050 0.950 31 H 0.030 0.970 32 H 0.101 0.899 33 H 0.079 0.921 34 H 0.064 0.936 35 H 0.092 0.908 36 H 0.045 0.955 37 H 0.097 0.903 38 H 0.079 0.921 39 H 0.406 0.594 40 H 0.064 0.936 41 H 0.027 0.973 42 H 0.378 0.622 43 H 0.247 0.753 44 H 0.064 0.936 45 H 0.084 0.916 46 H 0.043 0.957 47 H 0.077 0.923 48 H 0.074 0.926 49 H 0.060 0.940 50 H 0.056 0.944 51 H 0.039 0.961 52 H 0.033 0.967 53 H 0.072 0.928 54 H 0.047 0.953 55 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.682 -3.384 16.100 18.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.327 6.327 3 C 0.020 3.980 4 H 0.081 0.919 5 C -0.170 4.170 6 C -0.152 4.152 7 C -0.143 4.143 8 C -0.125 4.125 9 H 0.123 0.877 10 C 0.299 3.701 11 O -0.472 6.472 12 N -0.342 5.342 13 C -0.001 4.001 14 C 0.099 3.901 15 N -0.349 5.349 16 C -0.336 4.336 17 H 0.074 0.926 18 C -0.252 4.252 19 N -0.608 5.608 20 Si 0.772 3.228 21 H -0.222 1.222 22 H -0.224 1.224 23 H -0.214 1.214 24 C -0.144 4.144 25 C -0.151 4.151 26 C -0.145 4.145 27 C -0.144 4.144 28 C -0.157 4.157 29 C -0.129 4.129 30 H 0.068 0.932 31 H 0.049 0.951 32 H 0.119 0.881 33 H 0.098 0.902 34 H 0.083 0.917 35 H 0.110 0.890 36 H 0.064 0.936 37 H 0.115 0.885 38 H 0.097 0.903 39 H 0.242 0.758 40 H 0.082 0.918 41 H 0.046 0.954 42 H 0.213 0.787 43 H 0.056 0.944 44 H 0.083 0.917 45 H 0.102 0.898 46 H 0.062 0.938 47 H 0.095 0.905 48 H 0.093 0.907 49 H 0.079 0.921 50 H 0.075 0.925 51 H 0.058 0.942 52 H 0.052 0.948 53 H 0.090 0.910 54 H 0.066 0.934 55 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -9.337 -3.887 15.596 18.588 hybrid contribution 0.698 -0.096 -1.792 1.926 sum -8.639 -3.983 13.804 16.764 Atomic orbital electron populations 1.22871 0.80337 1.03469 1.00002 1.87784 1.20764 1.28856 1.95252 1.22418 0.95220 0.84186 0.96194 0.91879 1.21986 1.01655 0.97515 0.95872 1.21502 0.96017 0.95937 1.01751 1.21581 0.98311 1.02978 0.91457 1.21374 0.98893 0.93584 0.98661 0.87664 1.21025 0.86561 0.83264 0.79270 1.90575 1.29186 1.78045 1.49371 1.45715 1.21922 1.06761 1.59759 1.21632 0.91706 0.90504 0.96244 1.20032 0.86526 0.90804 0.92723 1.42471 1.04271 1.74238 1.13939 1.19135 0.91206 1.30927 0.92304 0.92560 1.25051 0.95784 1.03765 1.00595 1.69735 0.97241 1.53954 1.39870 0.85633 0.76223 0.78371 0.82584 1.22205 1.22426 1.21362 1.21661 1.01746 0.96762 0.94246 1.21449 0.98494 0.94809 1.00320 1.21456 0.99977 0.98172 0.94911 1.21307 1.00042 0.95474 0.97590 1.21838 0.98372 0.95990 0.99511 1.21291 0.95976 0.95246 1.00387 0.93187 0.95139 0.88064 0.90239 0.91694 0.88971 0.93641 0.88473 0.90261 0.75773 0.91835 0.95447 0.78749 0.94429 0.91736 0.89790 0.93838 0.90467 0.90745 0.92143 0.92508 0.94173 0.94815 0.90965 0.93413 0.89032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.64 10.82 113.37 1.23 1.87 16 2 O -0.41 -11.27 10.35 -148.98 -1.54 -12.81 16 3 C 0.08 2.09 2.32 30.60 0.07 2.16 16 4 H 0.06 2.08 5.26 -2.38 -0.01 2.07 16 5 C -0.13 -2.75 5.54 30.59 0.17 -2.58 16 6 C -0.11 -2.19 5.70 30.59 0.17 -2.01 16 7 C -0.11 -2.03 5.33 30.59 0.16 -1.87 16 8 C -0.10 -2.74 3.02 -11.54 -0.03 -2.77 16 9 H 0.11 2.74 8.14 -2.39 -0.02 2.72 16 10 C 0.51 17.32 5.62 87.66 0.49 17.82 16 11 O -0.59 -24.11 13.76 -3.04 -0.04 -24.15 16 12 N -0.69 -22.87 4.97 -463.06 -2.30 -25.17 16 13 C 0.13 4.40 4.26 86.38 0.37 4.77 16 14 C 0.19 6.34 0.40 3.60 0.00 6.34 16 15 N -0.71 -30.29 3.61 -303.35 -1.09 -31.39 16 16 C -0.20 -10.38 8.71 84.03 0.73 -9.64 16 17 H 0.06 2.99 6.77 -2.91 -0.02 2.97 16 18 C -0.06 -3.23 5.50 84.86 0.47 -2.76 16 19 N -0.96 -54.50 13.07 21.65 0.28 -54.22 16 20 Si 0.94 46.36 29.56 68.60 2.03 48.38 16 21 H -0.29 -14.48 7.11 99.48 0.71 -13.77 16 22 H -0.30 -14.81 7.11 99.48 0.71 -14.10 16 23 H -0.29 -14.24 7.11 99.48 0.71 -13.53 16 24 C -0.11 -2.77 4.67 30.59 0.14 -2.62 16 25 C -0.11 -2.93 5.75 30.60 0.18 -2.75 16 26 C -0.11 -2.69 5.92 30.60 0.18 -2.51 16 27 C -0.11 -3.33 5.77 30.59 0.18 -3.16 16 28 C -0.12 -3.82 4.62 30.59 0.14 -3.68 16 29 C -0.09 -2.48 4.73 30.60 0.14 -2.33 16 30 H 0.05 0.94 7.87 -2.39 -0.02 0.92 16 31 H 0.03 0.72 8.08 -2.39 -0.02 0.71 16 32 H 0.10 1.73 8.14 -2.38 -0.02 1.71 16 33 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.06 1.26 7.87 -2.38 -0.02 1.24 16 35 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.04 1.05 7.22 -2.39 -0.02 1.03 16 37 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.08 1.43 7.50 -2.39 -0.02 1.41 16 39 H 0.41 12.78 6.65 -92.71 -0.62 12.17 16 40 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 41 H 0.03 1.17 7.35 -2.39 -0.02 1.15 16 42 H 0.38 17.42 6.41 -92.71 -0.59 16.82 16 43 H 0.25 13.98 8.31 -92.71 -0.77 13.21 16 44 H 0.06 1.62 7.12 -2.39 -0.02 1.60 16 45 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 46 H 0.04 1.40 6.79 -2.39 -0.02 1.38 16 47 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 48 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 49 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 50 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 51 H 0.04 1.58 7.61 -2.39 -0.02 1.56 16 52 H 0.03 1.27 7.39 -2.39 -0.02 1.25 16 53 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 54 H 0.05 1.53 8.07 -2.39 -0.02 1.51 16 55 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 Total: -1.00 -64.64 407.42 1.78 -62.86 By element: Atomic # 1 Polarization: 42.56 SS G_CDS: -0.34 Total: 42.22 kcal Atomic # 6 Polarization: -10.51 SS G_CDS: 4.79 Total: -5.72 kcal Atomic # 7 Polarization: -107.67 SS G_CDS: -3.11 Total: -110.78 kcal Atomic # 8 Polarization: -35.38 SS G_CDS: -1.58 Total: -36.96 kcal Atomic # 14 Polarization: 46.36 SS G_CDS: 2.03 Total: 48.38 kcal Total: -64.64 1.78 -62.86 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115697787.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.337 kcal (2) G-P(sol) polarization free energy of solvation -64.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds