Wall clock time and date at job start Tue Mar 31 2020 22:54:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42908 * 113.99643 * 2 1 4 4 H 1.08998 * 109.46878 * 30.00621 * 3 2 1 5 5 C 1.52995 * 109.47271 * 270.00535 * 3 2 1 6 6 C 1.53003 * 109.46916 * 179.97438 * 5 3 2 7 7 C 1.53002 * 109.46926 * 59.99947 * 6 5 3 8 8 C 1.52995 * 109.47366 * 299.99777 * 7 6 5 9 9 H 1.08998 * 109.47240 * 300.00350 * 8 7 6 10 10 C 1.50700 * 109.47489 * 180.02562 * 8 7 6 11 11 O 1.21277 * 119.99686 * 240.00338 * 10 8 7 12 12 N 1.34775 * 119.99784 * 59.99807 * 10 8 7 13 13 C 1.46502 * 119.99764 * 180.02562 * 12 10 8 14 14 C 1.52998 * 109.47032 * 176.62694 * 13 12 10 15 15 N 1.46496 * 109.47196 * 54.63112 * 14 13 12 16 16 C 1.36946 * 119.99753 * 62.81055 * 15 14 13 17 17 H 1.07996 * 119.99894 * 354.24333 * 16 15 14 18 18 C 1.38813 * 119.99574 * 173.96495 * 16 15 14 19 19 N 1.31617 * 120.00270 * 0.27277 * 18 16 15 20 20 Si 1.86801 * 119.99560 * 180.27545 * 18 16 15 21 21 H 1.48503 * 109.47157 * 0.02562 * 20 18 16 22 22 H 1.48498 * 109.47113 * 119.99820 * 20 18 16 23 23 H 1.48499 * 109.47031 * 239.99955 * 20 18 16 24 24 C 1.53005 * 109.47102 * 174.63186 * 14 13 12 25 25 C 1.52998 * 109.47102 * 179.97438 * 24 14 13 26 26 C 1.53001 * 109.47343 * 300.00372 * 25 24 14 27 27 C 1.52996 * 109.47173 * 59.99708 * 26 25 24 28 28 C 1.52992 * 109.47132 * 300.00035 * 27 26 25 29 29 C 1.53002 * 109.46751 * 150.00372 * 3 2 1 30 30 H 1.09000 * 109.46922 * 299.98946 * 1 2 3 31 31 H 1.08995 * 109.47278 * 59.99625 * 1 2 3 32 32 H 1.09004 * 109.46608 * 180.02562 * 1 2 3 33 33 H 1.08994 * 109.47305 * 59.99668 * 5 3 2 34 34 H 1.08998 * 109.47240 * 299.99864 * 5 3 2 35 35 H 1.08998 * 109.47057 * 299.99978 * 6 5 3 36 36 H 1.09002 * 109.47168 * 179.97438 * 6 5 3 37 37 H 1.09003 * 109.47020 * 179.97438 * 7 6 5 38 38 H 1.08998 * 109.47227 * 60.00135 * 7 6 5 39 39 H 0.96997 * 120.00111 * 0.02562 * 12 10 8 40 40 H 1.09003 * 109.46944 * 56.62759 * 13 12 10 41 41 H 1.08990 * 109.47338 * 296.63175 * 13 12 10 42 42 H 0.97000 * 120.00533 * 242.81448 * 15 14 13 43 43 H 0.97002 * 119.99509 * 180.02562 * 19 18 16 44 44 H 1.09003 * 109.46887 * 300.00218 * 24 14 13 45 45 H 1.09001 * 109.46987 * 60.00273 * 24 14 13 46 46 H 1.08996 * 109.47137 * 179.97438 * 25 24 14 47 47 H 1.09001 * 109.46977 * 60.00267 * 25 24 14 48 48 H 1.09004 * 109.46575 * 299.99575 * 26 25 24 49 49 H 1.09003 * 109.47089 * 179.97438 * 26 25 24 50 50 H 1.09003 * 109.46735 * 180.02562 * 27 26 25 51 51 H 1.08995 * 109.46911 * 60.00605 * 27 26 25 52 52 H 1.08995 * 109.47688 * 300.00093 * 28 27 26 53 53 H 1.09009 * 109.47079 * 179.97438 * 28 27 26 54 54 H 1.08998 * 109.47227 * 60.00462 * 29 3 2 55 55 H 1.09002 * 109.46740 * 300.00029 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 1 1.3449 1.9994 0.5139 5 6 2.2175 1.7716 -1.4424 6 6 2.8391 3.1696 -1.4423 7 6 4.1878 3.1280 -0.7210 8 6 3.9805 2.6620 0.7215 9 1 3.3148 3.3555 1.2353 10 6 5.3087 2.6216 1.4322 11 8 5.7182 1.5773 1.8932 12 7 6.0415 3.7460 1.5554 13 6 7.3330 3.7066 2.2459 14 6 7.9926 5.0852 2.1729 15 7 7.0716 6.0956 2.6993 16 6 6.6720 6.0423 4.0080 17 1 6.9603 5.2055 4.6270 18 6 5.9013 7.0666 4.5406 19 7 5.5501 8.0864 3.7863 20 14 5.3627 6.9977 6.3280 21 1 5.8850 5.7569 6.9548 22 1 5.8961 8.1796 7.0516 23 1 3.8794 7.0019 6.3984 24 6 9.2759 5.0814 3.0061 25 6 9.9357 6.4598 2.9326 26 6 10.2739 6.7864 1.4767 27 6 8.9906 6.7902 0.6436 28 6 8.3308 5.4118 0.7170 29 6 3.3589 1.2633 0.7212 30 1 -0.3633 0.5137 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.2567 1.8015 -1.9562 34 1 2.8827 1.0778 -1.9564 35 1 2.1735 3.8632 -0.9285 36 1 2.9872 3.5015 -2.4700 37 1 4.6309 4.1239 -0.7213 38 1 4.8534 2.4344 -1.2348 39 1 5.7138 4.5813 1.1870 40 1 7.9782 2.9694 1.7679 41 1 7.1790 3.4323 3.2894 42 1 6.7448 6.8023 2.1208 43 1 5.0119 8.8024 4.1587 44 1 9.0349 4.8482 4.0433 45 1 9.9611 4.3296 2.6144 46 1 10.8497 6.4572 3.5265 47 1 9.2507 7.2118 3.3241 48 1 10.9590 6.0343 1.0853 49 1 10.7436 7.7687 1.4243 50 1 9.2317 7.0225 -0.3938 51 1 8.3057 7.5423 1.0349 52 1 9.0158 4.6598 0.3256 53 1 7.4163 5.4147 0.1237 54 1 4.0242 0.5695 0.2073 55 1 3.2111 0.9313 1.7488 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001115697789.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:54:16 Heat of formation + Delta-G solvation = -126.435246 kcal Electronic energy + Delta-G solvation = -31617.531507 eV Core-core repulsion = 27652.231178 eV Total energy + Delta-G solvation = -3965.300329 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.35787 -40.26327 -39.37402 -37.14796 -35.87352 -35.04487 -32.91583 -31.97152 -31.54559 -31.05377 -30.12285 -27.32093 -26.88038 -25.70003 -24.33373 -23.36719 -23.30740 -21.80753 -21.34385 -20.72211 -19.78959 -19.03498 -18.38298 -17.26860 -16.92836 -16.63764 -16.46205 -16.22329 -16.01986 -15.79231 -15.66563 -15.34071 -15.22681 -14.93263 -14.66699 -14.38922 -14.27689 -14.14196 -13.58643 -13.39971 -13.39376 -13.29441 -13.11488 -12.90287 -12.82456 -12.62563 -12.59277 -12.48906 -12.34366 -12.03934 -12.02878 -11.87364 -11.67360 -11.65850 -11.48394 -11.47592 -11.31190 -11.08290 -10.86398 -10.69350 -10.65370 -10.35439 -9.86409 -8.89501 -7.87433 -5.11308 1.42871 1.47557 1.52818 1.72259 2.30440 2.58663 2.85848 3.45596 3.61424 3.71301 3.83042 3.90290 3.94406 4.02810 4.08614 4.14910 4.15978 4.25035 4.35251 4.41126 4.43574 4.45625 4.49920 4.55213 4.55610 4.65423 4.68531 4.77218 4.78459 4.82782 4.85131 4.92793 4.97699 4.98077 5.06527 5.08673 5.11840 5.16269 5.19296 5.22802 5.23518 5.28977 5.44046 5.47519 5.50807 5.52376 5.60181 5.62836 5.71803 5.81883 6.29377 6.36067 6.71278 7.35727 7.45172 8.17598 8.44495 9.34925 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.011054 B = 0.003370 C = 0.002912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2532.450838 B = 8306.488698 C = 9612.250069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.410 6.410 3 C 0.091 3.909 4 H 0.069 0.931 5 C -0.135 4.135 6 C -0.109 4.109 7 C -0.107 4.107 8 C -0.096 4.096 9 H 0.103 0.897 10 C 0.509 3.491 11 O -0.595 6.595 12 N -0.694 5.694 13 C 0.121 3.879 14 C 0.191 3.809 15 N -0.708 5.708 16 C -0.205 4.205 17 H 0.059 0.941 18 C -0.060 4.060 19 N -0.957 5.957 20 Si 0.942 3.058 21 H -0.280 1.280 22 H -0.298 1.298 23 H -0.299 1.299 24 C -0.115 4.115 25 C -0.106 4.106 26 C -0.108 4.108 27 C -0.112 4.112 28 C -0.107 4.107 29 C -0.088 4.088 30 H 0.044 0.956 31 H 0.055 0.945 32 H 0.095 0.905 33 H 0.078 0.922 34 H 0.065 0.935 35 H 0.073 0.927 36 H 0.089 0.911 37 H 0.079 0.921 38 H 0.067 0.933 39 H 0.407 0.593 40 H 0.063 0.937 41 H 0.028 0.972 42 H 0.378 0.622 43 H 0.246 0.754 44 H 0.036 0.964 45 H 0.071 0.929 46 H 0.055 0.945 47 H 0.041 0.959 48 H 0.073 0.927 49 H 0.059 0.941 50 H 0.075 0.925 51 H 0.044 0.956 52 H 0.081 0.919 53 H 0.064 0.936 54 H 0.061 0.939 55 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.872 -8.188 -14.625 17.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.330 6.330 3 C 0.033 3.967 4 H 0.087 0.913 5 C -0.173 4.173 6 C -0.147 4.147 7 C -0.144 4.144 8 C -0.118 4.118 9 H 0.121 0.879 10 C 0.296 3.704 11 O -0.476 6.476 12 N -0.344 5.344 13 C -0.005 4.005 14 C 0.100 3.900 15 N -0.349 5.349 16 C -0.338 4.338 17 H 0.077 0.923 18 C -0.253 4.253 19 N -0.609 5.609 20 Si 0.775 3.225 21 H -0.205 1.205 22 H -0.226 1.226 23 H -0.227 1.227 24 C -0.155 4.155 25 C -0.144 4.144 26 C -0.145 4.145 27 C -0.150 4.150 28 C -0.145 4.145 29 C -0.126 4.126 30 H 0.063 0.937 31 H 0.074 0.926 32 H 0.113 0.887 33 H 0.097 0.903 34 H 0.084 0.916 35 H 0.091 0.909 36 H 0.108 0.892 37 H 0.098 0.902 38 H 0.086 0.914 39 H 0.244 0.756 40 H 0.081 0.919 41 H 0.046 0.954 42 H 0.212 0.788 43 H 0.055 0.945 44 H 0.055 0.945 45 H 0.089 0.911 46 H 0.074 0.926 47 H 0.060 0.940 48 H 0.092 0.908 49 H 0.077 0.923 50 H 0.094 0.906 51 H 0.063 0.937 52 H 0.100 0.900 53 H 0.083 0.917 54 H 0.080 0.920 55 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -2.462 -9.115 -14.114 16.981 hybrid contribution -0.888 0.892 1.623 2.054 sum -3.349 -8.223 -12.491 15.325 Atomic orbital electron populations 1.22966 0.79686 1.03702 1.00793 1.87881 1.21309 1.28512 1.95261 1.22161 0.93718 0.84335 0.96463 0.91276 1.22005 1.02069 0.97439 0.95760 1.21476 0.95227 0.96216 1.01771 1.21552 0.99209 1.02058 0.91616 1.21246 0.93076 0.98988 0.98442 0.87865 1.21054 0.86903 0.83094 0.79315 1.90633 1.73254 1.32247 1.51497 1.45762 1.20676 1.11183 1.56756 1.21717 0.84540 0.99089 0.95199 1.20002 0.89220 0.86919 0.93839 1.42465 1.52652 1.31000 1.08768 1.19202 1.23681 1.02027 0.88860 0.92311 1.25101 1.03060 0.97303 0.99810 1.69745 1.43842 1.11565 1.35704 0.85530 0.77164 0.76680 0.83150 1.20548 1.22597 1.22674 1.21791 0.96759 0.97585 0.99342 1.21298 0.98852 0.96943 0.97266 1.21450 0.97282 1.01331 0.94448 1.21435 0.96897 0.96743 0.99897 1.21656 1.00801 0.97949 0.94045 1.21239 0.95705 0.95329 1.00372 0.93712 0.92644 0.88660 0.90292 0.91599 0.90861 0.89237 0.90204 0.91437 0.75599 0.91851 0.95382 0.78786 0.94451 0.94485 0.91078 0.92598 0.94030 0.90846 0.92253 0.90601 0.93733 0.90024 0.91723 0.91989 0.93102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.39 10.82 113.37 1.23 1.62 16 2 O -0.41 -9.64 10.35 -148.98 -1.54 -11.18 16 3 C 0.09 1.95 2.61 30.59 0.08 2.03 16 4 H 0.07 1.36 7.79 -2.39 -0.02 1.34 16 5 C -0.14 -2.29 5.54 30.59 0.17 -2.12 16 6 C -0.11 -1.68 5.92 30.60 0.18 -1.50 16 7 C -0.11 -2.10 5.10 30.59 0.16 -1.94 16 8 C -0.10 -2.50 2.53 -11.52 -0.03 -2.53 16 9 H 0.10 2.60 8.14 -2.39 -0.02 2.58 16 10 C 0.51 17.40 7.15 87.66 0.63 18.02 16 11 O -0.59 -24.93 15.98 -3.02 -0.05 -24.98 16 12 N -0.69 -23.09 4.98 -463.07 -2.31 -25.40 16 13 C 0.12 4.32 4.37 86.38 0.38 4.70 16 14 C 0.19 6.49 0.41 3.61 0.00 6.49 16 15 N -0.71 -30.20 3.40 -303.34 -1.03 -31.23 16 16 C -0.21 -10.36 8.70 84.03 0.73 -9.63 16 17 H 0.06 3.08 6.77 -2.91 -0.02 3.06 16 18 C -0.06 -3.23 5.50 84.86 0.47 -2.76 16 19 N -0.96 -54.09 13.07 21.65 0.28 -53.81 16 20 Si 0.94 45.55 29.55 68.60 2.03 47.58 16 21 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 22 H -0.30 -14.57 7.11 99.48 0.71 -13.86 16 23 H -0.30 -14.60 7.11 99.48 0.71 -13.90 16 24 C -0.12 -3.85 4.52 30.60 0.14 -3.71 16 25 C -0.11 -3.45 5.77 30.59 0.18 -3.27 16 26 C -0.11 -2.83 5.92 30.59 0.18 -2.65 16 27 C -0.11 -3.03 5.75 30.59 0.18 -2.86 16 28 C -0.11 -2.89 4.65 30.59 0.14 -2.75 16 29 C -0.09 -2.39 4.15 30.61 0.13 -2.26 16 30 H 0.04 0.67 8.09 -2.39 -0.02 0.65 16 31 H 0.05 0.70 7.87 -2.39 -0.02 0.68 16 32 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.08 1.10 7.87 -2.39 -0.02 1.08 16 34 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.08 1.48 7.57 -2.39 -0.02 1.46 16 38 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 39 H 0.41 12.84 6.81 -92.71 -0.63 12.21 16 40 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 41 H 0.03 1.19 7.50 -2.39 -0.02 1.17 16 42 H 0.38 17.30 6.63 -92.71 -0.61 16.68 16 43 H 0.25 13.83 8.31 -92.71 -0.77 13.06 16 44 H 0.04 1.42 7.24 -2.39 -0.02 1.40 16 45 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 46 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 47 H 0.04 1.70 7.61 -2.39 -0.02 1.68 16 48 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 49 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 50 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 51 H 0.04 1.49 6.92 -2.39 -0.02 1.47 16 52 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 53 H 0.06 1.67 7.28 -2.38 -0.02 1.65 16 54 H 0.06 1.84 8.10 -2.39 -0.02 1.82 16 55 H 0.05 1.59 8.10 -2.39 -0.02 1.57 16 Total: -1.00 -64.63 414.35 1.92 -62.71 By element: Atomic # 1 Polarization: 41.84 SS G_CDS: -0.39 Total: 41.45 kcal Atomic # 6 Polarization: -10.07 SS G_CDS: 4.93 Total: -5.14 kcal Atomic # 7 Polarization: -107.38 SS G_CDS: -3.06 Total: -110.44 kcal Atomic # 8 Polarization: -34.57 SS G_CDS: -1.59 Total: -36.16 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 2.03 Total: 47.58 kcal Total: -64.63 1.92 -62.71 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115697789.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.722 kcal (2) G-P(sol) polarization free energy of solvation -64.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds