Wall clock time and date at job start Tue Mar 31 2020 22:34:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42899 * 114.00121 * 2 1 4 4 C 1.53004 * 109.47072 * 150.00296 * 3 2 1 5 5 C 1.52992 * 109.47219 * 179.97438 * 4 3 2 6 6 C 1.53003 * 109.47375 * 300.00261 * 5 4 3 7 7 C 1.50698 * 109.47120 * 179.97438 * 6 5 4 8 8 O 1.21283 * 120.00024 * 359.97438 * 7 6 5 9 9 N 1.34773 * 119.99903 * 179.97438 * 7 6 5 10 10 C 1.46500 * 119.99881 * 179.97438 * 9 7 6 11 11 C 1.53005 * 109.47150 * 184.89629 * 10 9 7 12 12 N 1.46498 * 109.46498 * 54.64990 * 11 10 9 13 13 C 1.36939 * 120.00632 * 64.67760 * 12 11 10 14 14 H 1.07998 * 119.99325 * 354.88868 * 13 12 11 15 15 C 1.38810 * 120.00195 * 174.89120 * 13 12 11 16 16 N 1.31614 * 120.00218 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 119.99713 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.47325 * 60.00085 * 17 15 13 19 19 H 1.48508 * 109.46974 * 179.97438 * 17 15 13 20 20 H 1.48496 * 109.47291 * 299.99975 * 17 15 13 21 21 C 1.52998 * 109.47189 * 294.65076 * 11 10 9 22 22 C 1.53000 * 109.46892 * 180.02562 * 21 11 10 23 23 C 1.52994 * 109.47223 * 59.99653 * 22 21 11 24 24 C 1.53002 * 109.47313 * 299.99670 * 23 22 21 25 25 C 1.52995 * 109.46604 * 60.00532 * 24 23 22 26 26 C 1.52994 * 109.46981 * 60.00019 * 6 5 4 27 27 C 1.52995 * 109.47077 * 270.00394 * 3 2 1 28 28 H 1.08995 * 109.47316 * 59.99677 * 1 2 3 29 29 H 1.08996 * 109.47305 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.46569 * 299.99444 * 1 2 3 31 31 H 1.09000 * 109.47062 * 30.00688 * 3 2 1 32 32 H 1.09000 * 109.46865 * 59.99711 * 4 3 2 33 33 H 1.09001 * 109.46900 * 300.00527 * 4 3 2 34 34 H 1.09004 * 109.47002 * 179.97438 * 5 4 3 35 35 H 1.09000 * 109.46842 * 60.00437 * 5 4 3 36 36 H 1.08995 * 109.46468 * 299.99548 * 6 5 4 37 37 H 0.96991 * 119.99966 * 0.02562 * 9 7 6 38 38 H 1.09000 * 109.47431 * 64.89946 * 10 9 7 39 39 H 1.08996 * 109.47387 * 304.89959 * 10 9 7 40 40 H 0.97009 * 119.99943 * 244.67031 * 12 11 10 41 41 H 0.96998 * 120.00535 * 180.02562 * 16 15 13 42 42 H 1.09005 * 109.47009 * 299.99445 * 21 11 10 43 43 H 1.08997 * 109.47070 * 59.99289 * 21 11 10 44 44 H 1.09005 * 109.46728 * 299.99479 * 22 21 11 45 45 H 1.09002 * 109.46822 * 180.02562 * 22 21 11 46 46 H 1.09004 * 109.46734 * 180.02562 * 23 22 21 47 47 H 1.08996 * 109.47450 * 60.00219 * 23 22 21 48 48 H 1.08995 * 109.47312 * 300.00077 * 24 23 22 49 49 H 1.08999 * 109.46638 * 180.02562 * 24 23 22 50 50 H 1.09006 * 109.46903 * 180.02562 * 25 24 23 51 51 H 1.08995 * 109.47658 * 59.99757 * 25 24 23 52 52 H 1.08994 * 109.47895 * 59.99852 * 26 6 5 53 53 H 1.09001 * 109.47293 * 180.02562 * 26 6 5 54 54 H 1.09004 * 109.47194 * 299.99623 * 27 3 2 55 55 H 1.08994 * 109.47452 * 60.00155 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.3590 1.2632 0.7212 5 6 3.9816 2.6607 0.7207 6 6 4.1891 3.1261 -0.7220 7 6 4.8018 4.5029 -0.7225 8 8 5.0479 5.0575 0.3277 9 7 5.0763 5.1179 -1.8899 10 6 5.6714 6.4566 -1.8903 11 6 5.7671 6.9717 -3.3278 12 7 4.4452 6.9127 -3.9565 13 6 3.4246 7.6911 -3.4794 14 1 3.5698 8.2861 -2.5899 15 6 2.2034 7.7153 -4.1389 16 7 2.0266 6.9906 -5.2232 17 14 0.8110 8.7767 -3.4875 18 1 1.2384 10.1988 -3.4715 19 1 -0.3775 8.6273 -4.3653 20 1 0.4655 8.3481 -2.1084 21 6 6.7467 6.1012 -4.1174 22 6 6.8428 6.6168 -5.5547 23 6 7.3395 8.0638 -5.5454 24 6 6.3598 8.9343 -4.7558 25 6 6.2638 8.4188 -3.3185 26 6 2.8404 3.1684 -1.4431 27 6 2.2176 1.7714 -1.4425 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.3451 1.9993 0.5139 32 1 4.0242 0.5692 0.2073 33 1 3.2112 0.9311 1.7488 34 1 4.9423 2.6306 1.2349 35 1 3.3166 3.3549 1.2344 36 1 4.8542 2.4319 -1.2355 37 1 4.8792 4.6745 -2.7297 38 1 6.6691 6.4109 -1.4537 39 1 5.0485 7.1313 -1.3032 40 1 4.2928 6.3223 -4.7110 41 1 1.1734 7.0077 -5.6843 42 1 7.7303 6.1452 -3.6496 43 1 6.3930 5.0703 -4.1236 44 1 5.8593 6.5732 -6.0228 45 1 7.5404 5.9964 -6.1174 46 1 7.4075 8.4312 -6.5694 47 1 8.3229 8.1074 -5.0773 48 1 5.3764 8.8908 -5.2239 49 1 6.7135 9.9653 -4.7496 50 1 5.5655 9.0387 -2.7561 51 1 7.2472 8.4623 -2.8504 52 1 2.1753 3.8626 -0.9295 53 1 2.9882 3.4995 -2.4710 54 1 2.8829 1.0775 -1.9564 55 1 1.2568 1.8015 -1.9562 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001115699514.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:58 Heat of formation + Delta-G solvation = -126.089161 kcal Electronic energy + Delta-G solvation = -31753.531455 eV Core-core repulsion = 27788.246133 eV Total energy + Delta-G solvation = -3965.285322 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.32834 -40.25672 -39.41619 -37.09074 -35.84991 -35.05338 -32.91047 -31.79261 -31.55087 -31.31586 -30.11064 -27.58636 -26.56700 -25.69501 -24.06447 -23.62672 -23.31485 -21.80957 -21.35623 -20.68994 -19.79062 -19.01826 -18.16769 -17.50832 -17.11897 -16.72029 -16.60238 -16.06992 -15.99111 -15.93824 -15.54940 -15.25795 -14.97949 -14.87575 -14.72159 -14.43872 -14.23982 -14.07397 -13.52663 -13.39787 -13.34759 -13.25133 -13.09140 -12.91166 -12.90716 -12.80240 -12.59000 -12.49157 -12.26401 -12.13019 -12.08307 -11.93068 -11.87124 -11.66340 -11.56097 -11.33319 -11.30331 -11.07907 -10.83200 -10.67309 -10.57678 -10.39774 -9.84896 -8.88566 -7.86676 -5.10012 1.43475 1.45637 1.49376 1.73526 2.41111 2.58890 2.79050 3.46146 3.64088 3.69776 3.79472 3.84516 3.94018 4.03535 4.09910 4.14391 4.15334 4.25913 4.35589 4.41276 4.44686 4.48421 4.49630 4.52557 4.54842 4.67975 4.75028 4.77009 4.77559 4.81809 4.82980 4.88343 4.93547 4.98301 4.99448 5.09252 5.09892 5.15570 5.18982 5.19041 5.22853 5.31998 5.38547 5.48291 5.51113 5.52398 5.60651 5.62310 5.72524 5.82103 6.26623 6.36192 6.72255 7.37868 7.45442 8.18581 8.44894 9.35430 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.010599 B = 0.003623 C = 0.003060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2641.021277 B = 7725.897053 C = 9148.066838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.400 6.400 3 C 0.086 3.914 4 C -0.105 4.105 5 C -0.089 4.089 6 C -0.097 4.097 7 C 0.508 3.492 8 O -0.594 6.594 9 N -0.696 5.696 10 C 0.120 3.880 11 C 0.190 3.810 12 N -0.707 5.707 13 C -0.204 4.204 14 H 0.057 0.943 15 C -0.059 4.059 16 N -0.958 5.958 17 Si 0.940 3.060 18 H -0.286 1.286 19 H -0.298 1.298 20 H -0.293 1.293 21 C -0.108 4.108 22 C -0.112 4.112 23 C -0.107 4.107 24 C -0.106 4.106 25 C -0.114 4.114 26 C -0.101 4.101 27 C -0.129 4.129 28 H 0.042 0.958 29 H 0.100 0.900 30 H 0.046 0.954 31 H 0.056 0.944 32 H 0.082 0.918 33 H 0.078 0.922 34 H 0.075 0.925 35 H 0.051 0.949 36 H 0.121 0.879 37 H 0.406 0.594 38 H 0.064 0.936 39 H 0.029 0.971 40 H 0.377 0.623 41 H 0.246 0.754 42 H 0.084 0.916 43 H 0.063 0.937 44 H 0.043 0.957 45 H 0.075 0.925 46 H 0.058 0.942 47 H 0.074 0.926 48 H 0.040 0.960 49 H 0.055 0.945 50 H 0.036 0.964 51 H 0.072 0.928 52 H 0.046 0.954 53 H 0.069 0.931 54 H 0.083 0.917 55 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.149 -11.679 5.033 14.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.319 6.319 3 C 0.029 3.971 4 C -0.142 4.142 5 C -0.127 4.127 6 C -0.118 4.118 7 C 0.295 3.705 8 O -0.475 6.475 9 N -0.345 5.345 10 C -0.006 4.006 11 C 0.099 3.901 12 N -0.347 5.347 13 C -0.336 4.336 14 H 0.075 0.925 15 C -0.252 4.252 16 N -0.609 5.609 17 Si 0.773 3.227 18 H -0.213 1.213 19 H -0.224 1.224 20 H -0.220 1.220 21 C -0.145 4.145 22 C -0.150 4.150 23 C -0.145 4.145 24 C -0.144 4.144 25 C -0.154 4.154 26 C -0.139 4.139 27 C -0.167 4.167 28 H 0.060 0.940 29 H 0.119 0.881 30 H 0.064 0.936 31 H 0.074 0.926 32 H 0.101 0.899 33 H 0.097 0.903 34 H 0.094 0.906 35 H 0.070 0.930 36 H 0.139 0.861 37 H 0.242 0.758 38 H 0.082 0.918 39 H 0.047 0.953 40 H 0.211 0.789 41 H 0.055 0.945 42 H 0.102 0.898 43 H 0.082 0.918 44 H 0.062 0.938 45 H 0.094 0.906 46 H 0.077 0.923 47 H 0.092 0.908 48 H 0.059 0.941 49 H 0.074 0.926 50 H 0.055 0.945 51 H 0.091 0.909 52 H 0.065 0.935 53 H 0.087 0.913 54 H 0.102 0.898 55 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 7.336 -11.306 5.830 14.684 hybrid contribution -1.916 1.092 -0.342 2.232 sum 5.420 -10.214 5.488 12.799 Atomic orbital electron populations 1.22947 0.80147 1.03749 1.00384 1.87852 1.20818 1.28091 1.95173 1.22213 0.95367 0.84110 0.95449 1.21522 0.94853 0.96499 1.01349 1.21223 1.01607 0.95813 0.94031 1.21361 0.97981 0.92936 0.99537 1.21142 0.77435 0.88671 0.83215 1.90623 1.55699 1.68448 1.32777 1.45767 1.62265 1.17864 1.08587 1.21747 0.96327 0.83350 0.99219 1.20017 0.86048 0.94278 0.89719 1.42424 1.05471 1.49227 1.37613 1.19100 0.91393 1.17716 1.05435 0.92456 1.25060 0.99660 1.02130 0.98323 1.69722 1.24338 1.45780 1.21057 0.85715 0.80602 0.79568 0.76858 1.21324 1.22436 1.21985 1.21667 0.98846 0.98293 0.95724 1.21433 1.00781 0.96460 0.96310 1.21444 0.98515 0.94877 0.99618 1.21298 0.99336 0.98221 0.95526 1.21774 0.99855 0.96568 0.97160 1.21362 0.94652 0.97430 1.00486 1.21922 1.01632 0.95734 0.97370 0.93971 0.88117 0.93566 0.92605 0.89928 0.90325 0.90595 0.92996 0.86066 0.75804 0.91784 0.95286 0.78890 0.94487 0.89773 0.91832 0.93846 0.90647 0.92335 0.90758 0.94088 0.92631 0.94534 0.90920 0.93499 0.91274 0.89827 0.91719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.41 10.82 113.37 1.23 1.63 16 2 O -0.40 -8.83 10.35 -148.98 -1.54 -10.37 16 3 C 0.09 1.88 2.61 30.59 0.08 1.96 16 4 C -0.10 -2.09 5.57 30.59 0.17 -1.91 16 5 C -0.09 -2.13 4.49 30.59 0.14 -1.99 16 6 C -0.10 -2.47 2.53 -11.54 -0.03 -2.50 16 7 C 0.51 17.06 7.15 87.66 0.63 17.69 16 8 O -0.59 -24.26 15.98 -3.04 -0.05 -24.31 16 9 N -0.70 -22.87 5.03 -463.06 -2.33 -25.20 16 10 C 0.12 4.23 4.40 86.38 0.38 4.61 16 11 C 0.19 6.43 0.40 3.61 0.00 6.43 16 12 N -0.71 -30.24 3.50 -303.34 -1.06 -31.30 16 13 C -0.20 -10.34 8.66 84.03 0.73 -9.61 16 14 H 0.06 3.01 6.77 -2.91 -0.02 2.99 16 15 C -0.06 -3.19 5.50 84.86 0.47 -2.73 16 16 N -0.96 -54.39 13.06 21.65 0.28 -54.11 16 17 Si 0.94 45.76 29.55 68.60 2.03 47.79 16 18 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 19 H -0.30 -14.67 7.11 99.48 0.71 -13.96 16 20 H -0.29 -14.29 7.11 99.48 0.71 -13.58 16 21 C -0.11 -2.89 4.64 30.59 0.14 -2.74 16 22 C -0.11 -3.04 5.75 30.59 0.18 -2.87 16 23 C -0.11 -2.81 5.92 30.59 0.18 -2.63 16 24 C -0.11 -3.45 5.77 30.59 0.18 -3.28 16 25 C -0.11 -3.79 4.49 30.59 0.14 -3.65 16 26 C -0.10 -2.71 5.10 30.58 0.16 -2.55 16 27 C -0.13 -2.90 5.53 30.58 0.17 -2.73 16 28 H 0.04 0.71 7.87 -2.39 -0.02 0.70 16 29 H 0.10 1.33 8.14 -2.39 -0.02 1.32 16 30 H 0.05 0.72 8.09 -2.38 -0.02 0.70 16 31 H 0.06 1.26 7.79 -2.39 -0.02 1.24 16 32 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.08 1.82 8.10 -2.39 -0.02 1.80 16 35 H 0.05 1.44 8.10 -2.39 -0.02 1.42 16 36 H 0.12 2.46 8.14 -2.39 -0.02 2.44 16 37 H 0.41 12.55 6.69 -92.71 -0.62 11.93 16 38 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 39 H 0.03 1.23 7.62 -2.39 -0.02 1.21 16 40 H 0.38 17.40 6.70 -92.70 -0.62 16.78 16 41 H 0.25 13.96 8.31 -92.71 -0.77 13.19 16 42 H 0.08 1.90 8.14 -2.38 -0.02 1.88 16 43 H 0.06 1.63 7.10 -2.39 -0.02 1.62 16 44 H 0.04 1.46 6.96 -2.38 -0.02 1.45 16 45 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 46 H 0.06 1.46 8.14 -2.39 -0.02 1.45 16 47 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 48 H 0.04 1.68 7.55 -2.39 -0.02 1.67 16 49 H 0.05 1.64 8.14 -2.39 -0.02 1.63 16 50 H 0.04 1.39 7.12 -2.38 -0.02 1.38 16 51 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 52 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 53 H 0.07 2.01 7.57 -2.39 -0.02 1.99 16 54 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 55 H 0.06 1.49 7.87 -2.39 -0.02 1.47 16 Total: -1.00 -63.29 414.16 1.87 -61.42 By element: Atomic # 1 Polarization: 43.35 SS G_CDS: -0.38 Total: 42.97 kcal Atomic # 6 Polarization: -11.81 SS G_CDS: 4.93 Total: -6.89 kcal Atomic # 7 Polarization: -107.51 SS G_CDS: -3.11 Total: -110.61 kcal Atomic # 8 Polarization: -33.09 SS G_CDS: -1.59 Total: -34.68 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 2.03 Total: 47.79 kcal Total: -63.29 1.87 -61.42 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115699514.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.673 kcal (2) G-P(sol) polarization free energy of solvation -63.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds