Wall clock time and date at job start Tue Mar 31 2020 22:40:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42899 * 114.00084 * 2 1 4 4 C 1.53000 * 109.46931 * 180.02562 * 3 2 1 5 5 C 1.53004 * 109.47221 * 184.89449 * 4 3 2 6 6 C 1.50703 * 112.84921 * 300.17366 * 5 4 3 7 7 O 1.21274 * 119.99902 * 113.01308 * 6 5 4 8 8 N 1.34777 * 119.99834 * 293.01063 * 6 5 4 9 9 C 1.46502 * 119.99936 * 175.51477 * 8 6 5 10 10 C 1.53000 * 109.46921 * 185.29480 * 9 8 6 11 11 N 1.46500 * 109.46983 * 302.62546 * 10 9 8 12 12 C 1.36932 * 120.00194 * 303.24966 * 11 10 9 13 13 H 1.07997 * 120.00258 * 4.86748 * 12 11 10 14 14 C 1.38814 * 119.99746 * 184.86498 * 12 11 10 15 15 N 1.31615 * 120.00364 * 0.02562 * 14 12 11 16 16 Si 1.86804 * 119.99863 * 180.02562 * 14 12 11 17 17 H 1.48504 * 109.46756 * 359.97438 * 16 14 12 18 18 H 1.48494 * 109.47212 * 120.00076 * 16 14 12 19 19 H 1.48507 * 109.46890 * 240.00189 * 16 14 12 20 20 C 1.52998 * 109.46775 * 182.63010 * 10 9 8 21 21 C 1.53007 * 109.47212 * 180.02562 * 20 10 9 22 22 C 1.52998 * 109.47057 * 59.99349 * 21 20 10 23 23 C 1.53003 * 109.47411 * 300.00622 * 22 21 20 24 24 C 1.52995 * 109.47078 * 62.62941 * 10 9 8 25 25 C 1.53780 * 113.68898 * 71.44026 * 5 4 3 26 26 C 1.53773 * 87.08431 * 89.12660 * 25 5 4 27 27 C 1.53778 * 113.61290 * 168.97425 * 5 4 3 28 28 H 1.08995 * 109.47094 * 179.97438 * 1 2 3 29 29 H 1.09009 * 109.46864 * 300.00258 * 1 2 3 30 30 H 1.09004 * 109.46820 * 59.99458 * 1 2 3 31 31 H 1.08994 * 109.47033 * 60.00483 * 3 2 1 32 32 H 1.09001 * 109.47443 * 299.99967 * 3 2 1 33 33 H 1.09004 * 109.47343 * 64.89552 * 4 3 2 34 34 H 1.09006 * 109.47220 * 304.89547 * 4 3 2 35 35 H 0.97004 * 119.99985 * 355.51948 * 8 6 5 36 36 H 1.09001 * 109.46781 * 65.29465 * 9 8 6 37 37 H 1.08998 * 109.47095 * 305.29685 * 9 8 6 38 38 H 0.97002 * 119.99367 * 123.25303 * 11 10 9 39 39 H 0.97005 * 120.00253 * 180.02562 * 15 14 12 40 40 H 1.09011 * 109.46922 * 299.99753 * 20 10 9 41 41 H 1.08999 * 109.47741 * 59.99938 * 20 10 9 42 42 H 1.09003 * 109.46869 * 300.00019 * 21 20 10 43 43 H 1.08996 * 109.47034 * 179.97438 * 21 20 10 44 44 H 1.08997 * 109.47196 * 180.02562 * 22 21 20 45 45 H 1.09011 * 109.47065 * 60.00425 * 22 21 20 46 46 H 1.08997 * 109.46530 * 299.99476 * 23 22 21 47 47 H 1.09000 * 109.46768 * 179.97438 * 23 22 21 48 48 H 1.08996 * 109.47202 * 299.99379 * 24 10 9 49 49 H 1.08997 * 109.47398 * 59.99757 * 24 10 9 50 50 H 1.08996 * 113.61667 * 203.67807 * 25 5 4 51 51 H 1.09003 * 113.61574 * 334.57498 * 25 5 4 52 52 H 1.09000 * 113.61620 * 270.88714 * 26 25 5 53 53 H 1.09005 * 113.61744 * 139.97732 * 26 25 5 54 54 H 1.09001 * 113.61921 * 25.35292 * 27 5 4 55 55 H 1.09004 * 113.61021 * 156.25197 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 4.1575 2.5770 0.1224 6 6 3.7653 3.4950 -1.0065 7 8 3.0671 4.4620 -0.7871 8 7 4.1906 3.2414 -2.2600 9 6 3.7301 4.0758 -3.3727 10 6 4.2504 3.5000 -4.6913 11 7 5.7125 3.4201 -4.6461 12 6 6.4524 4.5456 -4.3991 13 1 5.9578 5.4753 -4.1600 14 6 7.8384 4.4913 -4.4561 15 7 8.4412 3.3584 -4.7479 16 14 8.8478 6.0265 -4.1184 17 1 7.9379 7.1608 -3.8172 18 1 9.7412 5.7859 -2.9570 19 1 9.6666 6.3532 -5.3135 20 6 3.8248 4.4075 -5.8472 21 6 4.3445 3.8314 -7.1659 22 6 3.7630 2.4318 -7.3754 23 6 4.1886 1.5243 -6.2194 24 6 3.6694 2.1003 -4.9011 25 6 3.9908 3.2073 1.5152 26 6 5.3146 2.5241 1.8965 27 6 5.6698 2.5537 0.4005 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.6887 1.8463 0.8900 32 1 1.6887 1.8464 -0.8900 33 1 3.8629 0.7214 -0.9315 34 1 3.8516 0.5696 0.8420 35 1 4.8015 2.5062 -2.4255 36 1 4.1067 5.0908 -3.2457 37 1 2.6404 4.0919 -3.3881 38 1 6.1565 2.5699 -4.7912 39 1 9.4097 3.3204 -4.7873 40 1 2.7368 4.4669 -5.8808 41 1 4.2387 5.4047 -5.6978 42 1 5.4324 3.7715 -7.1326 43 1 4.0408 4.4777 -7.9894 44 1 4.1336 2.0212 -8.3146 45 1 2.6750 2.4916 -7.4087 46 1 5.2765 1.4645 -6.1862 47 1 3.7739 0.5274 -6.3685 48 1 3.9727 1.4538 -4.0776 49 1 2.5815 2.1597 -4.9347 50 1 4.0464 4.2958 1.5114 51 1 3.1295 2.8285 2.0656 52 1 5.1875 1.5176 2.2952 53 1 5.9652 3.1454 2.5121 54 1 6.1642 1.6473 0.0510 55 1 6.1845 3.4636 0.0919 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001120062053.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:50 Heat of formation + Delta-G solvation = -92.724632 kcal Electronic energy + Delta-G solvation = -32263.369190 eV Core-core repulsion = 28299.530663 eV Total energy + Delta-G solvation = -3963.838527 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.77190 -40.33334 -38.89678 -38.37397 -35.88361 -35.03718 -32.92662 -32.38447 -31.56138 -30.30992 -28.19522 -27.12730 -26.53585 -25.75901 -25.59173 -23.73111 -23.39626 -22.05947 -21.55220 -19.94392 -19.51541 -18.99353 -18.12928 -17.44907 -17.14174 -16.88286 -16.63785 -16.24769 -16.07785 -15.86060 -15.69347 -15.51444 -15.40487 -14.98574 -14.59557 -14.38038 -14.31732 -13.82082 -13.45729 -13.40393 -13.38245 -13.31243 -13.14783 -12.91390 -12.84286 -12.63995 -12.56114 -12.50262 -12.31416 -12.12121 -12.05284 -12.02037 -11.89871 -11.69890 -11.42532 -11.30956 -11.21032 -11.10042 -10.79959 -10.72996 -10.63810 -10.45788 -9.86826 -8.90144 -7.87351 -5.11279 1.42178 1.46579 1.51991 1.70655 2.37269 2.58380 2.69991 3.39963 3.45573 3.60883 3.79850 3.82936 3.87516 3.91702 3.98263 4.03116 4.11960 4.13845 4.25566 4.38104 4.41974 4.47361 4.51890 4.55860 4.62659 4.65941 4.73925 4.75074 4.76718 4.80292 4.81204 4.84487 4.89830 4.93252 4.94641 5.01446 5.06215 5.07499 5.14160 5.17298 5.21370 5.24016 5.45142 5.47710 5.48983 5.50732 5.58245 5.61933 5.70668 5.79381 6.17159 6.35412 6.70872 7.34128 7.44743 8.17206 8.43885 9.35086 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.009403 B = 0.004500 C = 0.003417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2977.186009 B = 6220.276466 C = 8191.293254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.406 6.406 3 C 0.067 3.933 4 C -0.080 4.080 5 C -0.100 4.100 6 C 0.519 3.481 7 O -0.592 6.592 8 N -0.695 5.695 9 C 0.124 3.876 10 C 0.190 3.810 11 N -0.708 5.708 12 C -0.205 4.205 13 H 0.059 0.941 14 C -0.059 4.059 15 N -0.957 5.957 16 Si 0.942 3.058 17 H -0.281 1.281 18 H -0.298 1.298 19 H -0.298 1.298 20 C -0.115 4.115 21 C -0.106 4.106 22 C -0.107 4.107 23 C -0.113 4.113 24 C -0.106 4.106 25 C -0.113 4.113 26 C -0.124 4.124 27 C -0.127 4.127 28 H 0.103 0.897 29 H 0.049 0.951 30 H 0.041 0.959 31 H 0.056 0.944 32 H 0.032 0.968 33 H 0.077 0.923 34 H 0.103 0.897 35 H 0.406 0.594 36 H 0.029 0.971 37 H 0.062 0.938 38 H 0.378 0.622 39 H 0.246 0.754 40 H 0.070 0.930 41 H 0.036 0.964 42 H 0.040 0.960 43 H 0.057 0.943 44 H 0.060 0.940 45 H 0.073 0.927 46 H 0.044 0.956 47 H 0.075 0.925 48 H 0.060 0.940 49 H 0.079 0.921 50 H 0.068 0.932 51 H 0.085 0.915 52 H 0.107 0.893 53 H 0.077 0.923 54 H 0.087 0.913 55 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.085 -8.690 7.470 18.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.326 6.326 3 C -0.010 4.010 4 C -0.117 4.117 5 C -0.103 4.103 6 C 0.306 3.694 7 O -0.474 6.474 8 N -0.343 5.343 9 C -0.003 4.003 10 C 0.100 3.900 11 N -0.349 5.349 12 C -0.338 4.338 13 H 0.077 0.923 14 C -0.252 4.252 15 N -0.609 5.609 16 Si 0.775 3.225 17 H -0.206 1.206 18 H -0.226 1.226 19 H -0.226 1.226 20 C -0.155 4.155 21 C -0.143 4.143 22 C -0.145 4.145 23 C -0.150 4.150 24 C -0.144 4.144 25 C -0.151 4.151 26 C -0.161 4.161 27 C -0.165 4.165 28 H 0.122 0.878 29 H 0.068 0.932 30 H 0.060 0.940 31 H 0.075 0.925 32 H 0.050 0.950 33 H 0.096 0.904 34 H 0.122 0.878 35 H 0.242 0.758 36 H 0.047 0.953 37 H 0.080 0.920 38 H 0.212 0.788 39 H 0.055 0.945 40 H 0.088 0.912 41 H 0.055 0.945 42 H 0.059 0.941 43 H 0.076 0.924 44 H 0.079 0.921 45 H 0.092 0.908 46 H 0.063 0.937 47 H 0.094 0.906 48 H 0.079 0.921 49 H 0.098 0.902 50 H 0.087 0.913 51 H 0.104 0.896 52 H 0.126 0.874 53 H 0.096 0.904 54 H 0.106 0.894 55 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -14.433 -8.002 7.612 18.174 hybrid contribution 1.372 1.242 -0.296 1.874 sum -13.061 -6.760 7.316 16.426 Atomic orbital electron populations 1.22932 0.79657 1.03970 1.00559 1.87807 1.21314 1.27907 1.95536 1.22422 0.94077 0.84415 1.00071 1.21165 0.92719 0.92945 1.04919 1.22124 0.98914 0.95465 0.93844 1.20916 0.78912 0.85446 0.84130 1.90612 1.41074 1.31350 1.84336 1.45796 1.47936 1.34247 1.06355 1.21660 0.97368 0.93691 0.87547 1.20001 0.84193 0.94865 0.90976 1.42472 0.99830 1.07946 1.84623 1.19192 0.88332 0.90350 1.35883 0.92343 1.25089 0.97520 0.98237 1.04375 1.69748 1.07862 1.25296 1.57976 0.85532 0.79293 0.81127 0.76582 1.20582 1.22610 1.22590 1.21817 0.99596 0.98448 0.95672 1.21299 1.00126 0.96761 0.96143 1.21450 1.00660 0.94481 0.97865 1.21433 1.00350 0.98822 0.94414 1.21625 1.00492 0.94403 0.97847 1.22821 0.99500 0.99908 0.92858 1.22833 0.96083 1.02291 0.94857 1.22926 0.92466 1.02818 0.98254 0.87849 0.93212 0.94042 0.92549 0.95004 0.90443 0.87820 0.75819 0.95251 0.91966 0.78813 0.94453 0.91155 0.94508 0.94083 0.92441 0.92106 0.90840 0.93718 0.90649 0.92135 0.90194 0.91329 0.89635 0.87416 0.90428 0.89426 0.91837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.41 11.01 113.37 1.25 1.66 16 2 O -0.41 -9.17 10.70 -148.98 -1.59 -10.76 16 3 C 0.07 1.54 5.59 71.98 0.40 1.94 16 4 C -0.08 -1.74 4.95 30.60 0.15 -1.59 16 5 C -0.10 -2.60 0.79 -52.40 -0.04 -2.64 16 6 C 0.52 17.73 5.79 87.66 0.51 18.24 16 7 O -0.59 -24.29 16.19 -3.01 -0.05 -24.34 16 8 N -0.69 -23.83 5.07 -463.06 -2.35 -26.17 16 9 C 0.12 4.50 4.32 86.38 0.37 4.87 16 10 C 0.19 6.63 0.40 3.60 0.00 6.63 16 11 N -0.71 -30.81 3.60 -303.36 -1.09 -31.90 16 12 C -0.21 -10.48 8.71 84.03 0.73 -9.75 16 13 H 0.06 3.09 6.72 -2.91 -0.02 3.08 16 14 C -0.06 -3.23 5.50 84.86 0.47 -2.77 16 15 N -0.96 -54.79 13.06 21.65 0.28 -54.51 16 16 Si 0.94 45.95 29.55 68.60 2.03 47.98 16 17 H -0.28 -13.44 7.11 99.48 0.71 -12.73 16 18 H -0.30 -14.68 7.11 99.48 0.71 -13.97 16 19 H -0.30 -14.68 7.11 99.48 0.71 -13.98 16 20 C -0.12 -3.89 4.61 30.60 0.14 -3.75 16 21 C -0.11 -3.44 5.77 30.60 0.18 -3.27 16 22 C -0.11 -2.85 5.92 30.59 0.18 -2.66 16 23 C -0.11 -3.14 5.75 30.58 0.18 -2.96 16 24 C -0.11 -3.00 4.64 30.58 0.14 -2.86 16 25 C -0.11 -2.67 6.72 31.12 0.21 -2.46 16 26 C -0.12 -2.39 7.73 31.12 0.24 -2.15 16 27 C -0.13 -3.19 7.22 31.12 0.22 -2.97 16 28 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.05 0.71 8.14 -2.38 -0.02 0.69 16 30 H 0.04 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.06 1.24 7.03 -2.39 -0.02 1.22 16 32 H 0.03 0.84 7.58 -2.39 -0.02 0.82 16 33 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 34 H 0.10 1.87 7.30 -2.38 -0.02 1.85 16 35 H 0.41 13.67 7.35 -92.71 -0.68 12.99 16 36 H 0.03 1.26 7.11 -2.39 -0.02 1.25 16 37 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 38 H 0.38 17.78 6.43 -92.71 -0.60 17.18 16 39 H 0.25 13.99 8.31 -92.70 -0.77 13.22 16 40 H 0.07 2.00 8.14 -2.38 -0.02 1.98 16 41 H 0.04 1.41 7.56 -2.39 -0.02 1.40 16 42 H 0.04 1.68 7.61 -2.39 -0.02 1.66 16 43 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 44 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 45 H 0.07 1.65 8.14 -2.38 -0.02 1.63 16 46 H 0.04 1.52 6.80 -2.39 -0.02 1.51 16 47 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 48 H 0.06 1.70 7.14 -2.39 -0.02 1.68 16 49 H 0.08 1.96 8.14 -2.39 -0.02 1.95 16 50 H 0.07 1.93 7.74 -2.39 -0.02 1.92 16 51 H 0.09 1.73 7.12 -2.39 -0.02 1.71 16 52 H 0.11 1.59 7.60 -2.39 -0.02 1.57 16 53 H 0.08 1.43 8.14 -2.38 -0.02 1.41 16 54 H 0.09 2.03 8.10 -2.39 -0.02 2.01 16 55 H 0.06 1.95 8.09 -2.39 -0.02 1.93 16 Total: -1.00 -63.76 418.22 2.15 -61.61 By element: Atomic # 1 Polarization: 45.00 SS G_CDS: -0.41 Total: 44.59 kcal Atomic # 6 Polarization: -11.83 SS G_CDS: 5.33 Total: -6.50 kcal Atomic # 7 Polarization: -109.43 SS G_CDS: -3.15 Total: -112.59 kcal Atomic # 8 Polarization: -33.46 SS G_CDS: -1.64 Total: -35.10 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 2.03 Total: 47.98 kcal Total: -63.76 2.15 -61.61 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120062053.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.111 kcal (2) G-P(sol) polarization free energy of solvation -63.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds