Wall clock time and date at job start Tue Mar 31 2020 22:57:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42907 * 113.99673 * 2 1 4 4 H 1.08990 * 109.47132 * 30.00096 * 3 2 1 5 5 C 1.50703 * 109.46987 * 270.00171 * 3 2 1 6 6 O 1.21284 * 119.99735 * 355.00280 * 5 3 2 7 7 N 1.34770 * 120.00182 * 175.00011 * 5 3 2 8 8 C 1.46500 * 120.00284 * 179.97438 * 7 5 3 9 9 C 1.52998 * 109.47193 * 176.63360 * 8 7 5 10 10 N 1.46503 * 109.47160 * 54.63000 * 9 8 7 11 11 C 1.36933 * 120.00155 * 62.83119 * 10 9 8 12 12 H 1.07997 * 120.00006 * 354.27352 * 11 10 9 13 13 C 1.38815 * 120.00068 * 174.53403 * 11 10 9 14 14 N 1.31622 * 119.99864 * 359.73413 * 13 11 10 15 15 Si 1.86794 * 120.00030 * 179.72970 * 13 11 10 16 16 H 1.48507 * 109.47114 * 0.02562 * 15 13 11 17 17 H 1.48493 * 109.47158 * 120.00393 * 15 13 11 18 18 H 1.48506 * 109.47322 * 240.00353 * 15 13 11 19 19 C 1.53002 * 109.47330 * 174.62742 * 9 8 7 20 20 C 1.52998 * 109.47330 * 179.97438 * 19 9 8 21 21 C 1.53003 * 109.47071 * 300.00031 * 20 19 9 22 22 C 1.53001 * 109.47078 * 60.00201 * 21 20 19 23 23 C 1.52998 * 109.47005 * 299.99840 * 22 21 20 24 24 C 1.53000 * 109.47003 * 150.00491 * 3 2 1 25 25 C 1.54265 * 110.03352 * 57.90274 * 24 3 2 26 26 C 1.54963 * 104.16119 * 217.13715 * 25 24 3 27 27 C 1.54887 * 102.77523 * 37.89070 * 26 25 24 28 28 C 1.53877 * 110.02889 * 300.68958 * 24 3 2 29 29 H 1.09001 * 109.46958 * 300.00136 * 1 2 3 30 30 H 1.09000 * 109.47418 * 59.99623 * 1 2 3 31 31 H 1.08999 * 109.47080 * 180.02562 * 1 2 3 32 32 H 0.97005 * 119.99919 * 0.02562 * 7 5 3 33 33 H 1.08997 * 109.46908 * 56.63552 * 8 7 5 34 34 H 1.09002 * 109.47243 * 296.63083 * 8 7 5 35 35 H 0.97003 * 119.99884 * 242.83814 * 10 9 8 36 36 H 0.96999 * 119.99703 * 179.97438 * 14 13 11 37 37 H 1.09001 * 109.46988 * 300.00179 * 19 9 8 38 38 H 1.08998 * 109.46626 * 59.99910 * 19 9 8 39 39 H 1.08996 * 109.46979 * 180.02562 * 20 19 9 40 40 H 1.09000 * 109.47310 * 59.99802 * 20 19 9 41 41 H 1.08998 * 109.47296 * 300.00342 * 21 20 19 42 42 H 1.08997 * 109.47118 * 179.97438 * 21 20 19 43 43 H 1.08994 * 109.47364 * 179.97438 * 22 21 20 44 44 H 1.09006 * 109.47518 * 59.99759 * 22 21 20 45 45 H 1.08998 * 109.47339 * 299.99841 * 23 22 21 46 46 H 1.09002 * 109.47631 * 179.97438 * 23 22 21 47 47 H 1.08994 * 110.01733 * 179.30050 * 24 3 2 48 48 H 1.09004 * 110.48478 * 335.78664 * 25 24 3 49 49 H 1.09002 * 110.48514 * 98.43210 * 25 24 3 50 50 H 1.09001 * 110.71889 * 279.57517 * 26 25 24 51 51 H 1.09001 * 110.92214 * 156.29743 * 26 25 24 52 52 H 1.09003 * 110.48430 * 203.40576 * 27 26 25 53 53 H 1.08997 * 110.60399 * 80.82128 * 27 26 25 54 54 H 1.09002 * 110.02684 * 238.56923 * 28 24 3 55 55 H 1.09002 * 110.03325 * 359.95037 * 28 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 1 1.3450 1.9994 0.5138 5 6 2.2145 1.7645 -1.4209 6 8 1.9790 1.0106 -2.3413 7 7 2.6587 3.0125 -1.6687 8 6 2.8578 3.4584 -3.0499 9 6 3.2822 4.9283 -3.0551 10 7 4.4618 5.0990 -2.2030 11 6 5.6335 4.4658 -2.5210 12 1 5.6641 3.7685 -3.3451 13 6 6.7807 4.7158 -1.7805 14 7 6.7434 5.5656 -0.7760 15 14 8.3772 3.8462 -2.2094 16 1 8.1553 2.9487 -3.3715 17 1 9.4127 4.8536 -2.5532 18 1 8.8332 3.0454 -1.0449 19 6 3.6195 5.3568 -4.4846 20 6 4.0434 6.8269 -4.4899 21 6 2.8984 7.6897 -3.9556 22 6 2.5612 7.2613 -2.5260 23 6 2.1373 5.7912 -2.5207 24 6 3.3589 1.2634 0.7211 25 6 4.2934 0.2455 0.0352 26 6 5.0702 -0.4058 1.2073 27 6 3.9917 -0.5165 2.3134 28 6 3.1674 0.7794 2.1692 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 2.8473 3.6153 -0.9324 33 1 1.9266 3.3472 -3.6053 34 1 3.6347 2.8543 -3.5183 35 1 4.4127 5.6606 -1.4136 36 1 7.5450 5.7401 -0.2584 37 1 4.4349 4.7418 -4.8654 38 1 2.7419 5.2298 -5.1185 39 1 4.2832 7.1322 -5.5084 40 1 4.9207 6.9544 -3.8558 41 1 2.0209 7.5623 -4.5895 42 1 3.2005 8.7370 -3.9589 43 1 1.7458 7.8762 -2.1451 44 1 3.4386 7.3887 -1.8919 45 1 1.2599 5.6638 -3.1547 46 1 1.8975 5.4858 -1.5022 47 1 3.8161 2.2528 0.7155 48 1 3.7122 -0.5050 -0.5008 49 1 4.9794 0.7537 -0.6424 50 1 5.8902 0.2357 1.5300 51 1 5.4403 -1.3924 0.9284 52 1 4.4581 -0.5644 3.2975 53 1 3.3611 -1.3901 2.1483 54 1 3.5325 1.5337 2.8663 55 1 2.1135 0.5755 2.3584 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001120075015.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:57:36 Heat of formation + Delta-G solvation = -116.493774 kcal Electronic energy + Delta-G solvation = -32540.596178 eV Core-core repulsion = 28575.726943 eV Total energy + Delta-G solvation = -3964.869235 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.41185 -40.24767 -38.87782 -37.66413 -35.84068 -35.04077 -32.98566 -31.75157 -31.52348 -30.17381 -29.58207 -27.57454 -27.30386 -25.71139 -25.41836 -23.44403 -22.02252 -21.72551 -21.27591 -20.55438 -19.81995 -19.06735 -18.50342 -17.76331 -17.01028 -16.81554 -16.41220 -16.29004 -16.03790 -15.81692 -15.47074 -15.43328 -15.11131 -14.95204 -14.71795 -14.31507 -14.15153 -14.02366 -13.81039 -13.42714 -13.40242 -13.25019 -12.91317 -12.85063 -12.60297 -12.52723 -12.50008 -12.31121 -12.03551 -11.96261 -11.92802 -11.87908 -11.67659 -11.66907 -11.57027 -11.41916 -11.34075 -11.31143 -11.08050 -10.76334 -10.70124 -10.19548 -9.89277 -8.88939 -7.86984 -5.10261 1.41589 1.46718 1.51219 1.63797 2.25058 2.58345 2.83774 3.46147 3.56714 3.68495 3.78152 3.82272 3.90569 3.93395 4.03170 4.08268 4.14728 4.31219 4.40333 4.48567 4.49685 4.55502 4.60033 4.65326 4.67411 4.72163 4.75676 4.76939 4.80639 4.81897 4.85510 4.89085 4.91511 4.96563 4.99707 5.07553 5.09521 5.18546 5.22440 5.23788 5.31604 5.45135 5.46515 5.50075 5.51640 5.51723 5.58571 5.62643 5.69764 5.81571 6.07747 6.36375 6.69110 7.32544 7.45922 8.17611 8.44841 9.35382 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.009648 B = 0.004756 C = 0.003599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2901.433885 B = 5885.771204 C = 7778.822655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.370 6.370 3 C 0.090 3.910 4 H 0.111 0.889 5 C 0.484 3.516 6 O -0.583 6.583 7 N -0.693 5.693 8 C 0.123 3.877 9 C 0.190 3.810 10 N -0.706 5.706 11 C -0.201 4.201 12 H 0.056 0.944 13 C -0.056 4.056 14 N -0.955 5.955 15 Si 0.937 3.063 16 H -0.282 1.282 17 H -0.298 1.298 18 H -0.299 1.299 19 C -0.114 4.114 20 C -0.105 4.105 21 C -0.108 4.108 22 C -0.112 4.112 23 C -0.107 4.107 24 C -0.083 4.083 25 C -0.117 4.117 26 C -0.123 4.123 27 C -0.112 4.112 28 C -0.106 4.106 29 H 0.067 0.933 30 H 0.029 0.971 31 H 0.100 0.900 32 H 0.406 0.594 33 H 0.063 0.937 34 H 0.026 0.974 35 H 0.378 0.622 36 H 0.246 0.754 37 H 0.035 0.965 38 H 0.070 0.930 39 H 0.055 0.945 40 H 0.041 0.959 41 H 0.073 0.927 42 H 0.059 0.941 43 H 0.075 0.925 44 H 0.044 0.956 45 H 0.081 0.919 46 H 0.063 0.937 47 H 0.082 0.918 48 H 0.060 0.940 49 H 0.033 0.967 50 H 0.060 0.940 51 H 0.067 0.933 52 H 0.078 0.922 53 H 0.068 0.932 54 H 0.075 0.925 55 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.258 -3.303 4.633 15.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.287 6.287 3 C 0.028 3.972 4 H 0.129 0.871 5 C 0.271 3.729 6 O -0.464 6.464 7 N -0.345 5.345 8 C -0.003 4.003 9 C 0.099 3.901 10 N -0.347 5.347 11 C -0.334 4.334 12 H 0.074 0.926 13 C -0.249 4.249 14 N -0.607 5.607 15 Si 0.770 3.230 16 H -0.208 1.208 17 H -0.226 1.226 18 H -0.227 1.227 19 C -0.153 4.153 20 C -0.143 4.143 21 C -0.145 4.145 22 C -0.149 4.149 23 C -0.144 4.144 24 C -0.102 4.102 25 C -0.155 4.155 26 C -0.161 4.161 27 C -0.150 4.150 28 C -0.144 4.144 29 H 0.085 0.915 30 H 0.048 0.952 31 H 0.119 0.881 32 H 0.243 0.757 33 H 0.081 0.919 34 H 0.045 0.955 35 H 0.212 0.788 36 H 0.055 0.945 37 H 0.054 0.946 38 H 0.089 0.911 39 H 0.074 0.926 40 H 0.060 0.940 41 H 0.091 0.909 42 H 0.078 0.922 43 H 0.094 0.906 44 H 0.063 0.937 45 H 0.100 0.900 46 H 0.082 0.918 47 H 0.100 0.900 48 H 0.078 0.922 49 H 0.051 0.949 50 H 0.078 0.922 51 H 0.086 0.914 52 H 0.096 0.904 53 H 0.087 0.913 54 H 0.093 0.907 55 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -14.199 -4.097 3.885 15.281 hybrid contribution 1.665 0.115 -0.161 1.677 sum -12.534 -3.983 3.723 13.669 Atomic orbital electron populations 1.23018 0.79672 1.04074 1.00427 1.87966 1.21183 1.25252 1.94294 1.22063 0.97473 0.86977 0.90648 0.87117 1.21854 0.76650 0.81535 0.92905 1.90629 1.53372 1.54703 1.47676 1.45797 1.65195 1.13952 1.09523 1.21703 0.98743 0.97264 0.82633 1.20011 0.87841 0.90582 0.91618 1.42431 1.06656 1.56921 1.28643 1.19135 0.87888 1.16036 1.10345 0.92558 1.25023 0.99328 1.01030 0.99512 1.69732 1.27984 1.39992 1.22987 0.85613 0.82687 0.77833 0.76907 1.20760 1.22575 1.22681 1.21773 1.00064 0.96733 0.96757 1.21296 0.98685 0.94558 0.99787 1.21449 0.98083 0.98577 0.96385 1.21432 1.00782 0.95587 0.97134 1.21655 0.96711 0.94849 1.01229 1.21887 0.91863 1.00201 0.96241 1.22273 0.97399 0.98025 0.97820 1.22482 0.97965 1.00254 0.95379 1.22267 0.96511 0.97884 0.98316 1.22085 1.01393 0.97600 0.93297 0.91462 0.95186 0.88143 0.75736 0.91899 0.95538 0.78776 0.94461 0.94568 0.91137 0.92624 0.93965 0.90868 0.92243 0.90623 0.93680 0.90016 0.91807 0.89952 0.92165 0.94854 0.92155 0.91388 0.90370 0.91284 0.90657 0.90162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.49 10.81 113.37 1.23 1.72 16 2 O -0.37 -10.31 8.34 -129.99 -1.08 -11.39 16 3 C 0.09 2.46 2.06 29.85 0.06 2.52 16 4 H 0.11 2.32 7.79 -2.39 -0.02 2.30 16 5 C 0.48 16.86 6.51 87.66 0.57 17.43 16 6 O -0.58 -24.88 16.51 15.95 0.26 -24.62 16 7 N -0.69 -23.33 5.05 -463.07 -2.34 -25.67 16 8 C 0.12 4.42 4.37 86.38 0.38 4.79 16 9 C 0.19 6.47 0.41 3.60 0.00 6.47 16 10 N -0.71 -29.97 3.40 -303.34 -1.03 -31.00 16 11 C -0.20 -10.18 8.70 84.03 0.73 -9.44 16 12 H 0.06 2.97 6.77 -2.91 -0.02 2.95 16 13 C -0.06 -3.02 5.50 84.86 0.47 -2.55 16 14 N -0.96 -53.93 13.07 21.65 0.28 -53.64 16 15 Si 0.94 45.91 29.55 68.60 2.03 47.94 16 16 H -0.28 -13.67 7.11 99.48 0.71 -12.96 16 17 H -0.30 -14.73 7.11 99.48 0.71 -14.02 16 18 H -0.30 -14.84 7.11 99.48 0.71 -14.13 16 19 C -0.11 -3.80 4.52 30.59 0.14 -3.66 16 20 C -0.11 -3.43 5.77 30.59 0.18 -3.25 16 21 C -0.11 -2.81 5.92 30.60 0.18 -2.63 16 22 C -0.11 -3.01 5.75 30.59 0.18 -2.83 16 23 C -0.11 -2.88 4.65 30.59 0.14 -2.74 16 24 C -0.08 -2.32 2.79 -10.07 -0.03 -2.35 16 25 C -0.12 -3.85 5.65 31.69 0.18 -3.67 16 26 C -0.12 -3.33 6.91 31.91 0.22 -3.11 16 27 C -0.11 -2.44 6.83 31.67 0.22 -2.22 16 28 C -0.11 -2.31 6.21 31.32 0.19 -2.11 16 29 H 0.07 0.99 8.08 -2.39 -0.02 0.97 16 30 H 0.03 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.41 12.99 7.19 -92.70 -0.67 12.32 16 33 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 34 H 0.03 1.14 7.50 -2.39 -0.02 1.12 16 35 H 0.38 17.25 6.63 -92.71 -0.61 16.63 16 36 H 0.25 13.84 8.31 -92.71 -0.77 13.07 16 37 H 0.04 1.39 7.23 -2.39 -0.02 1.37 16 38 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 39 H 0.06 1.64 8.14 -2.39 -0.02 1.63 16 40 H 0.04 1.72 7.60 -2.39 -0.02 1.70 16 41 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 42 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 43 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 44 H 0.04 1.50 6.92 -2.38 -0.02 1.48 16 45 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 46 H 0.06 1.65 7.28 -2.39 -0.02 1.63 16 47 H 0.08 2.51 7.94 -2.39 -0.02 2.50 16 48 H 0.06 2.15 7.15 -2.38 -0.02 2.13 16 49 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 50 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 51 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 52 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 53 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 54 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 55 H 0.08 1.51 7.40 -2.39 -0.02 1.50 16 Total: -1.00 -64.59 416.54 2.73 -61.86 By element: Atomic # 1 Polarization: 44.59 SS G_CDS: -0.42 Total: 44.16 kcal Atomic # 6 Polarization: -12.67 SS G_CDS: 5.03 Total: -7.64 kcal Atomic # 7 Polarization: -107.23 SS G_CDS: -3.09 Total: -110.32 kcal Atomic # 8 Polarization: -35.19 SS G_CDS: -0.82 Total: -36.01 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 2.03 Total: 47.94 kcal Total: -64.59 2.73 -61.86 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120075015.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.630 kcal (2) G-P(sol) polarization free energy of solvation -64.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds