Wall clock time and date at job start Tue Mar 31 2020 22:57:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42905 * 113.99771 * 2 1 4 4 H 1.09000 * 109.46917 * 34.14556 * 3 2 1 5 5 C 1.50703 * 109.46614 * 154.14539 * 3 2 1 6 6 O 1.21276 * 120.00353 * 16.70826 * 5 3 2 7 7 N 1.34782 * 119.99790 * 196.71116 * 5 3 2 8 8 C 1.46490 * 120.00067 * 184.34559 * 7 5 3 9 9 C 1.53002 * 109.47259 * 271.22186 * 8 7 5 10 10 N 1.46501 * 109.46916 * 302.73607 * 9 8 7 11 11 C 1.36936 * 120.00452 * 66.97858 * 10 9 8 12 12 H 1.07997 * 119.99680 * 357.68357 * 11 10 9 13 13 C 1.38812 * 120.00372 * 177.68770 * 11 10 9 14 14 N 1.31617 * 119.99750 * 5.10734 * 13 11 10 15 15 Si 1.86799 * 120.00127 * 185.11475 * 13 11 10 16 16 H 1.48503 * 109.47241 * 84.98700 * 15 13 11 17 17 H 1.48492 * 109.47054 * 204.98751 * 15 13 11 18 18 H 1.48502 * 109.47025 * 324.98900 * 15 13 11 19 19 C 1.52999 * 109.47158 * 62.73016 * 9 8 7 20 20 C 1.53002 * 109.47158 * 180.02562 * 19 9 8 21 21 C 1.53000 * 109.47010 * 300.00448 * 20 19 9 22 22 C 1.52997 * 109.47194 * 59.99939 * 21 20 19 23 23 C 1.52993 * 109.47074 * 299.99514 * 22 21 20 24 24 C 1.52995 * 109.47085 * 274.14168 * 3 2 1 25 25 C 1.54267 * 110.03440 * 291.85719 * 24 3 2 26 26 C 1.54893 * 104.19706 * 217.10682 * 25 24 3 27 27 C 1.54892 * 102.74734 * 37.93515 * 26 25 24 28 28 C 1.53878 * 110.03304 * 174.68866 * 24 3 2 29 29 H 1.09002 * 109.46655 * 184.97352 * 1 2 3 30 30 H 1.09003 * 109.47023 * 304.97029 * 1 2 3 31 31 H 1.08998 * 109.46991 * 64.96750 * 1 2 3 32 32 H 0.97002 * 119.99404 * 4.34002 * 7 5 3 33 33 H 1.09003 * 109.47072 * 151.22070 * 8 7 5 34 34 H 1.08998 * 109.47338 * 31.21978 * 8 7 5 35 35 H 0.97005 * 119.99949 * 247.26038 * 10 9 8 36 36 H 0.97001 * 119.99994 * 180.02562 * 14 13 11 37 37 H 1.08999 * 109.47249 * 300.00850 * 19 9 8 38 38 H 1.09000 * 109.46605 * 60.00200 * 19 9 8 39 39 H 1.08998 * 109.46564 * 180.02562 * 20 19 9 40 40 H 1.09001 * 109.46723 * 60.00333 * 20 19 9 41 41 H 1.08994 * 109.46902 * 299.99471 * 21 20 19 42 42 H 1.09001 * 109.46799 * 180.02562 * 21 20 19 43 43 H 1.08999 * 109.46917 * 179.97438 * 22 21 20 44 44 H 1.09000 * 109.46903 * 59.99952 * 22 21 20 45 45 H 1.08993 * 109.47746 * 300.00388 * 23 22 21 46 46 H 1.09004 * 109.46806 * 179.97438 * 23 22 21 47 47 H 1.08999 * 110.01549 * 53.29396 * 24 3 2 48 48 H 1.09002 * 110.48150 * 335.77953 * 25 24 3 49 49 H 1.08992 * 110.49397 * 98.42715 * 25 24 3 50 50 H 1.08997 * 110.75418 * 279.62566 * 26 25 24 51 51 H 1.09000 * 110.91940 * 156.32641 * 26 25 24 52 52 H 1.09003 * 110.48929 * 203.37650 * 27 26 25 53 53 H 1.09008 * 110.59735 * 80.79847 * 27 26 25 54 54 H 1.08998 * 110.02843 * 238.57354 * 28 24 3 55 55 H 1.08994 * 110.02851 * 359.97438 * 28 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3810 1.9833 0.5768 5 6 3.3826 1.2443 0.6196 6 8 3.9451 0.1770 0.7434 7 7 3.9850 2.3758 1.0363 8 6 5.3558 2.3291 1.5506 9 6 5.3266 2.0621 3.0569 10 7 4.5340 3.0996 3.7214 11 6 3.1855 3.1799 3.4972 12 1 2.7124 2.5024 2.8019 13 6 2.4265 4.1322 4.1636 14 7 3.0158 5.0223 4.9334 15 14 0.5689 4.1502 3.9678 16 1 -0.0396 3.1977 4.9309 17 1 0.0564 5.5183 4.2338 18 1 0.2132 3.7489 2.5830 19 6 4.6971 0.6926 3.3199 20 6 4.6673 0.4259 4.8262 21 6 6.0950 0.4451 5.3759 22 6 6.7244 1.8145 5.1128 23 6 6.7543 2.0812 3.6066 24 6 2.1225 1.8138 -1.4387 25 6 3.1682 0.9843 -2.2122 26 6 3.8714 2.0174 -3.1272 27 6 3.9550 3.2729 -2.2239 28 6 2.6228 3.2689 -1.4461 29 1 -0.3633 -1.0238 0.0891 30 1 -0.3633 0.5890 0.8421 31 1 -0.3633 0.4348 -0.9311 32 1 3.5107 3.2209 0.9954 33 1 5.8480 3.2829 1.3602 34 1 5.9045 1.5309 1.0508 35 1 4.9651 3.7322 4.3172 36 1 2.4855 5.6876 5.3994 37 1 3.6798 0.6791 2.9286 38 1 5.2868 -0.0793 2.8255 39 1 4.2192 -0.5500 5.0135 40 1 4.0773 1.1979 5.3203 41 1 6.6849 -0.3269 4.8819 42 1 6.0738 0.2546 6.4489 43 1 7.7414 1.8283 5.5049 44 1 6.1344 2.5865 5.6069 45 1 7.3442 1.3093 3.1125 46 1 7.2023 3.0571 3.4193 47 1 1.1535 1.7495 -1.9337 48 1 3.8839 0.5351 -1.5236 49 1 2.6789 0.2157 -2.8104 50 1 3.2712 2.2193 -4.0144 51 1 4.8679 1.6753 -3.4064 52 1 4.0400 4.1745 -2.8306 53 1 4.7980 3.1957 -1.5371 54 1 1.8970 3.9107 -1.9455 55 1 2.7852 3.6131 -0.4248 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001120075016.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:57:41 Heat of formation + Delta-G solvation = -98.635769 kcal Electronic energy + Delta-G solvation = -33630.459713 eV Core-core repulsion = 29666.364860 eV Total energy + Delta-G solvation = -3964.094853 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.70700 -40.12712 -38.52518 -37.92753 -35.89093 -34.76631 -32.93829 -31.64195 -31.50380 -30.15952 -29.55423 -28.02270 -27.03046 -25.64754 -25.19836 -23.38953 -22.29115 -21.68918 -21.12447 -20.75965 -19.74823 -19.01777 -18.32956 -17.83797 -17.16972 -16.67198 -16.46797 -16.26861 -16.08335 -15.69452 -15.29373 -15.27267 -15.17457 -14.98982 -14.83313 -14.27835 -14.25917 -13.89333 -13.72576 -13.40274 -13.32363 -12.89842 -12.88295 -12.74872 -12.68518 -12.54231 -12.42849 -12.19401 -12.05640 -11.97166 -11.89988 -11.86901 -11.82882 -11.67234 -11.59854 -11.37047 -11.34058 -11.08772 -10.91565 -10.82671 -10.65660 -10.29408 -9.62687 -8.77485 -7.81972 -5.03277 1.40883 1.47683 1.51456 1.77469 2.14334 2.60381 3.05099 3.51895 3.59473 3.61270 3.79245 3.86876 3.93380 4.03542 4.06830 4.09001 4.19202 4.31426 4.43831 4.45813 4.47865 4.53921 4.54850 4.64061 4.67490 4.70246 4.74670 4.77886 4.80465 4.83930 4.84555 4.86166 4.93427 4.97106 5.03370 5.05937 5.09263 5.20036 5.25293 5.27638 5.32429 5.39571 5.47097 5.49209 5.51494 5.57615 5.63340 5.72102 5.76441 5.82021 6.05849 6.41316 6.78912 7.46043 7.48403 8.26077 8.53048 9.41802 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.009725 B = 0.005464 C = 0.004574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2878.465607 B = 5123.636002 C = 6120.052341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.384 6.384 3 C 0.073 3.927 4 H 0.074 0.926 5 C 0.521 3.479 6 O -0.562 6.562 7 N -0.690 5.690 8 C 0.114 3.886 9 C 0.180 3.820 10 N -0.712 5.712 11 C -0.194 4.194 12 H 0.076 0.924 13 C -0.072 4.072 14 N -0.964 5.964 15 Si 0.934 3.066 16 H -0.306 1.306 17 H -0.302 1.302 18 H -0.263 1.263 19 C -0.091 4.091 20 C -0.111 4.111 21 C -0.106 4.106 22 C -0.109 4.109 23 C -0.109 4.109 24 C -0.101 4.101 25 C -0.118 4.118 26 C -0.116 4.116 27 C -0.120 4.120 28 C -0.126 4.126 29 H 0.102 0.898 30 H 0.038 0.962 31 H 0.063 0.937 32 H 0.406 0.594 33 H 0.082 0.918 34 H 0.069 0.931 35 H 0.373 0.627 36 H 0.243 0.757 37 H 0.030 0.970 38 H 0.047 0.953 39 H 0.040 0.960 40 H 0.041 0.959 41 H 0.067 0.933 42 H 0.058 0.942 43 H 0.075 0.925 44 H 0.043 0.957 45 H 0.078 0.922 46 H 0.068 0.932 47 H 0.097 0.903 48 H 0.049 0.951 49 H 0.067 0.933 50 H 0.081 0.919 51 H 0.066 0.934 52 H 0.081 0.919 53 H 0.055 0.945 54 H 0.087 0.913 55 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.208 -4.893 -13.734 14.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.302 6.302 3 C 0.012 3.988 4 H 0.091 0.909 5 C 0.307 3.693 6 O -0.442 6.442 7 N -0.342 5.342 8 C -0.012 4.012 9 C 0.089 3.911 10 N -0.352 5.352 11 C -0.327 4.327 12 H 0.093 0.907 13 C -0.264 4.264 14 N -0.617 5.617 15 Si 0.766 3.234 16 H -0.234 1.234 17 H -0.229 1.229 18 H -0.187 1.187 19 C -0.130 4.130 20 C -0.149 4.149 21 C -0.143 4.143 22 C -0.146 4.146 23 C -0.147 4.147 24 C -0.120 4.120 25 C -0.156 4.156 26 C -0.154 4.154 27 C -0.157 4.157 28 C -0.164 4.164 29 H 0.121 0.879 30 H 0.056 0.944 31 H 0.082 0.918 32 H 0.244 0.756 33 H 0.101 0.899 34 H 0.088 0.912 35 H 0.206 0.794 36 H 0.052 0.948 37 H 0.048 0.952 38 H 0.065 0.935 39 H 0.059 0.941 40 H 0.060 0.940 41 H 0.085 0.915 42 H 0.076 0.924 43 H 0.094 0.906 44 H 0.062 0.938 45 H 0.097 0.903 46 H 0.086 0.914 47 H 0.116 0.884 48 H 0.068 0.932 49 H 0.086 0.914 50 H 0.100 0.900 51 H 0.085 0.915 52 H 0.099 0.901 53 H 0.074 0.926 54 H 0.106 0.894 55 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 2.556 -5.843 -13.737 15.145 hybrid contribution -1.846 0.923 0.878 2.242 sum 0.710 -4.920 -12.859 13.787 Atomic orbital electron populations 1.23071 0.79407 1.04042 1.00967 1.87975 1.21192 1.25918 1.95131 1.22248 0.92830 0.86091 0.97619 0.90861 1.20210 0.87386 0.84117 0.77539 1.90633 1.66474 1.29884 1.57170 1.45975 1.16327 1.09747 1.62180 1.21994 0.82443 1.01724 0.95077 1.20240 0.91330 0.88284 0.91205 1.42529 1.04542 1.34264 1.53834 1.19469 0.85328 1.10575 1.17325 0.90665 1.25200 0.99782 0.99763 1.01667 1.69774 1.34458 1.20623 1.36835 0.85721 0.83877 0.75679 0.78097 1.23438 1.22923 1.18744 1.21636 0.99534 0.97082 0.94732 1.21382 0.97531 0.99117 0.96857 1.21423 0.95264 0.97601 1.00030 1.21388 1.00322 0.96806 0.96125 1.21619 0.94950 1.02075 0.96082 1.22200 1.01316 0.95862 0.92625 1.22386 0.97280 0.97774 0.98112 1.22468 1.00503 0.94548 0.97856 1.22319 0.96602 0.98687 0.98139 1.22329 0.98439 0.94716 1.00873 0.87950 0.94364 0.91815 0.75602 0.89940 0.91234 0.79358 0.94750 0.95163 0.93455 0.94097 0.94033 0.91472 0.92360 0.90644 0.93829 0.90318 0.91372 0.88436 0.93187 0.91433 0.90031 0.91533 0.90073 0.92608 0.89441 0.92508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.51 10.84 113.37 1.23 1.74 16 2 O -0.38 -12.64 9.81 -130.49 -1.28 -13.92 16 3 C 0.07 2.30 2.20 29.85 0.07 2.37 16 4 H 0.07 2.35 7.77 -2.39 -0.02 2.33 16 5 C 0.52 18.76 3.62 87.66 0.32 19.07 16 6 O -0.56 -23.63 13.00 15.47 0.20 -23.43 16 7 N -0.69 -23.44 2.49 -463.07 -1.15 -24.60 16 8 C 0.11 3.79 5.36 86.38 0.46 4.25 16 9 C 0.18 6.61 0.66 3.60 0.00 6.61 16 10 N -0.71 -31.57 3.99 -303.34 -1.21 -32.78 16 11 C -0.19 -9.53 7.42 84.03 0.62 -8.91 16 12 H 0.08 3.65 4.81 -2.91 -0.01 3.64 16 13 C -0.07 -3.84 5.50 84.86 0.47 -3.37 16 14 N -0.96 -55.57 13.07 21.65 0.28 -55.28 16 15 Si 0.93 43.80 29.56 68.60 2.03 45.83 16 16 H -0.31 -14.93 7.11 99.48 0.71 -14.22 16 17 H -0.30 -14.54 7.11 99.48 0.71 -13.84 16 18 H -0.26 -11.13 7.11 99.48 0.71 -10.42 16 19 C -0.09 -3.61 3.06 30.59 0.09 -3.52 16 20 C -0.11 -4.31 5.77 30.59 0.18 -4.14 16 21 C -0.11 -3.34 5.92 30.59 0.18 -3.16 16 22 C -0.11 -3.39 5.75 30.59 0.18 -3.22 16 23 C -0.11 -3.34 4.76 30.59 0.15 -3.19 16 24 C -0.10 -2.45 2.90 -10.07 -0.03 -2.48 16 25 C -0.12 -2.93 6.04 31.67 0.19 -2.74 16 26 C -0.12 -2.28 6.91 31.89 0.22 -2.06 16 27 C -0.12 -2.43 6.83 31.67 0.22 -2.22 16 28 C -0.13 -2.76 5.92 31.32 0.19 -2.58 16 29 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 30 H 0.04 0.95 7.97 -2.39 -0.02 0.93 16 31 H 0.06 1.20 7.58 -2.39 -0.02 1.19 16 32 H 0.41 13.82 5.58 -92.71 -0.52 13.31 16 33 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 34 H 0.07 2.29 7.52 -2.39 -0.02 2.27 16 35 H 0.37 18.24 6.79 -92.70 -0.63 17.61 16 36 H 0.24 14.01 8.31 -92.71 -0.77 13.23 16 37 H 0.03 1.38 4.74 -2.39 -0.01 1.37 16 38 H 0.05 1.87 7.77 -2.39 -0.02 1.86 16 39 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 40 H 0.04 1.90 7.42 -2.39 -0.02 1.89 16 41 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 42 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 43 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 44 H 0.04 1.63 7.01 -2.39 -0.02 1.61 16 45 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 46 H 0.07 1.97 8.14 -2.38 -0.02 1.96 16 47 H 0.10 2.01 7.55 -2.39 -0.02 1.99 16 48 H 0.05 1.58 5.77 -2.39 -0.01 1.57 16 49 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 50 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 51 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 52 H 0.08 1.36 8.14 -2.39 -0.02 1.35 16 53 H 0.06 1.29 8.14 -2.38 -0.02 1.27 16 54 H 0.09 1.58 8.14 -2.39 -0.02 1.57 16 55 H 0.06 1.43 4.84 -2.39 -0.01 1.42 16 Total: -1.00 -63.38 398.10 3.33 -60.05 By element: Atomic # 1 Polarization: 51.91 SS G_CDS: -0.26 Total: 51.64 kcal Atomic # 6 Polarization: -12.25 SS G_CDS: 4.72 Total: -7.52 kcal Atomic # 7 Polarization: -110.58 SS G_CDS: -2.08 Total: -112.66 kcal Atomic # 8 Polarization: -36.26 SS G_CDS: -1.08 Total: -37.34 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.83 kcal Total: -63.38 3.33 -60.05 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120075016.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.586 kcal (2) G-P(sol) polarization free energy of solvation -63.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds