Wall clock time and date at job start Tue Mar 31 2020 22:50:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42903 * 114.00053 * 2 1 4 4 H 1.08997 * 109.46812 * 329.99650 * 3 2 1 5 5 C 1.53003 * 109.47318 * 89.99630 * 3 2 1 6 6 C 1.52997 * 109.47078 * 180.02562 * 5 3 2 7 7 C 1.52997 * 109.47342 * 299.99946 * 6 5 3 8 8 C 1.53003 * 109.46990 * 60.00000 * 7 6 5 9 9 C 1.52997 * 109.47009 * 209.99570 * 3 2 1 10 10 H 1.09002 * 109.47029 * 60.00249 * 9 3 2 11 11 C 1.50693 * 109.47147 * 299.99699 * 9 3 2 12 12 O 1.21282 * 120.00507 * 0.02562 * 11 9 3 13 13 N 1.34783 * 119.99833 * 180.02562 * 11 9 3 14 14 C 1.46502 * 119.99941 * 180.02562 * 13 11 9 15 15 C 1.52996 * 109.47184 * 177.71266 * 14 13 11 16 16 N 1.46506 * 109.47122 * 54.61844 * 15 14 13 17 17 C 1.36941 * 119.99994 * 59.72849 * 16 15 14 18 18 H 1.07994 * 119.99477 * 5.86072 * 17 16 15 19 19 C 1.38814 * 119.99925 * 185.85865 * 17 16 15 20 20 N 1.31625 * 119.99781 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00062 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47180 * 89.99333 * 21 19 17 23 23 H 1.48494 * 109.47184 * 209.99929 * 21 19 17 24 24 H 1.48506 * 109.46626 * 329.99808 * 21 19 17 25 25 C 1.52997 * 109.47318 * 174.61746 * 15 14 13 26 26 C 1.52996 * 109.47318 * 179.97438 * 25 15 14 27 27 C 1.52998 * 109.47314 * 300.00366 * 26 25 15 28 28 C 1.52997 * 109.47227 * 59.99578 * 27 26 25 29 29 C 1.52996 * 109.47318 * 300.00419 * 28 27 26 30 30 H 1.08999 * 109.47559 * 300.00446 * 1 2 3 31 31 H 1.09002 * 109.46925 * 60.00247 * 1 2 3 32 32 H 1.08999 * 109.47410 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.46637 * 300.00213 * 5 3 2 34 34 H 1.08995 * 109.47473 * 59.99807 * 5 3 2 35 35 H 1.09005 * 109.47404 * 60.00047 * 6 5 3 36 36 H 1.09003 * 109.47244 * 179.97438 * 6 5 3 37 37 H 1.08994 * 109.47368 * 180.02562 * 7 6 5 38 38 H 1.09005 * 109.46953 * 300.00377 * 7 6 5 39 39 H 1.08999 * 109.47212 * 180.02562 * 8 7 6 40 40 H 1.08997 * 109.47162 * 60.00086 * 8 7 6 41 41 H 0.96996 * 119.99981 * 359.97438 * 13 11 9 42 42 H 1.09000 * 109.47235 * 57.70927 * 14 13 11 43 43 H 1.09007 * 109.46626 * 297.71100 * 14 13 11 44 44 H 0.97001 * 119.99879 * 239.73181 * 16 15 14 45 45 H 0.96998 * 119.99295 * 179.97438 * 20 19 17 46 46 H 1.08995 * 109.47292 * 59.99750 * 25 15 14 47 47 H 1.09002 * 109.47073 * 299.99880 * 25 15 14 48 48 H 1.09007 * 109.46977 * 60.00019 * 26 25 15 49 49 H 1.09002 * 109.47258 * 179.97438 * 26 25 15 50 50 H 1.09001 * 109.47217 * 180.02562 * 27 26 25 51 51 H 1.09007 * 109.46815 * 299.99752 * 27 26 25 52 52 H 1.09002 * 109.47073 * 180.02562 * 28 27 26 53 53 H 1.08999 * 109.46856 * 60.00414 * 28 27 26 54 54 H 1.09007 * 109.46977 * 299.99981 * 29 28 27 55 55 H 1.09002 * 109.47258 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3450 1.9993 -0.5139 5 6 2.2176 1.7715 1.4425 6 6 2.8393 3.1694 1.4424 7 6 4.1880 3.1278 0.7211 8 6 3.9806 2.6618 -0.7214 9 6 3.3589 1.2632 -0.7211 10 1 3.2112 0.9313 -1.7488 11 6 4.2786 0.3039 -0.0106 12 8 3.8932 -0.2881 0.9752 13 7 5.5296 0.1039 -0.4708 14 6 6.4235 -0.8291 0.2196 15 6 7.7525 -0.9140 -0.5336 16 7 8.3105 0.4313 -0.6926 17 6 8.5986 1.1880 0.4118 18 1 8.5043 0.7603 1.3989 19 6 9.0118 2.5048 0.2624 20 7 9.1272 3.0258 -0.9408 21 14 9.4054 3.5368 1.7688 22 1 10.8426 3.3854 2.1108 23 1 9.1126 4.9640 1.4814 24 1 8.5740 3.0813 2.9119 25 6 8.7327 -1.7823 0.2577 26 6 10.0615 -1.8677 -0.4959 27 6 9.8273 -2.4893 -1.8741 28 6 8.8471 -1.6210 -2.6653 29 6 7.5183 -1.5356 -1.9118 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.2567 1.8015 1.9562 34 1 2.8828 1.0776 1.9564 35 1 2.1738 3.8631 0.9287 36 1 2.9867 3.5016 2.4701 37 1 4.6311 4.1236 0.7215 38 1 4.8535 2.4341 1.2349 39 1 4.9414 2.6318 -1.2352 40 1 3.3150 3.3554 -1.2352 41 1 5.8377 0.5770 -1.2594 42 1 5.9620 -1.8160 0.2546 43 1 6.6033 -0.4759 1.2351 44 1 8.4758 0.7860 -1.5802 45 1 9.4155 3.9460 -1.0451 46 1 8.3176 -2.7832 0.3760 47 1 8.8993 -1.3396 1.2397 48 1 10.4768 -0.8668 -0.6146 49 1 10.7600 -2.4859 0.0681 50 1 10.7740 -2.5505 -2.4107 51 1 9.4119 -3.4901 -1.7554 52 1 8.6799 -2.0641 -3.6471 53 1 9.2624 -0.6202 -2.7840 54 1 7.1030 -2.5365 -1.7931 55 1 6.8198 -0.9173 -2.4757 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001120226528.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:50:56 Heat of formation + Delta-G solvation = -115.504131 kcal Electronic energy + Delta-G solvation = -32798.997286 eV Core-core repulsion = 28834.170965 eV Total energy + Delta-G solvation = -3964.826321 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.58605 -40.28375 -38.72855 -37.12175 -35.81000 -34.97409 -32.98985 -31.93967 -31.53653 -30.83045 -30.13560 -27.33888 -26.74249 -25.66284 -24.25320 -23.41751 -23.15742 -22.12963 -21.57820 -20.40893 -19.71827 -18.97246 -17.83966 -17.43290 -16.95423 -16.71223 -16.43774 -16.14059 -15.91213 -15.80066 -15.56505 -15.16665 -14.97533 -14.86107 -14.60543 -14.44757 -14.29707 -14.15592 -13.48831 -13.37886 -13.34111 -13.20916 -13.00142 -12.90373 -12.84775 -12.74340 -12.58188 -12.49832 -12.40178 -12.05069 -11.93232 -11.90273 -11.71153 -11.66766 -11.41523 -11.32434 -11.19821 -11.13067 -10.75305 -10.68250 -10.36155 -10.25469 -9.70734 -8.86431 -7.84225 -5.07434 1.43019 1.46986 1.51462 1.90723 2.49090 2.61062 2.88803 3.48987 3.65272 3.75205 3.83728 3.94462 4.00100 4.04778 4.10311 4.15552 4.22170 4.29694 4.32392 4.41574 4.45591 4.49203 4.52063 4.57780 4.61861 4.67637 4.74059 4.77538 4.81241 4.83620 4.85850 4.92655 4.93828 4.98650 5.02155 5.09426 5.13187 5.17818 5.19884 5.22751 5.30382 5.35807 5.47724 5.49157 5.51395 5.54500 5.61158 5.66701 5.80134 5.83319 6.38570 6.42770 6.84947 7.48163 7.54136 8.19776 8.47585 9.37939 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.010423 B = 0.004665 C = 0.003576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2685.780641 B = 6001.140380 C = 7828.796726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.399 6.399 3 C 0.116 3.884 4 H 0.092 0.908 5 C -0.151 4.151 6 C -0.107 4.107 7 C -0.124 4.124 8 C -0.099 4.099 9 C -0.102 4.102 10 H 0.115 0.885 11 C 0.514 3.486 12 O -0.571 6.571 13 N -0.701 5.701 14 C 0.128 3.872 15 C 0.191 3.809 16 N -0.706 5.706 17 C -0.202 4.202 18 H 0.055 0.945 19 C -0.054 4.054 20 N -0.954 5.954 21 Si 0.937 3.063 22 H -0.295 1.295 23 H -0.297 1.297 24 H -0.287 1.287 25 C -0.116 4.116 26 C -0.105 4.105 27 C -0.108 4.108 28 C -0.111 4.111 29 C -0.107 4.107 30 H 0.043 0.957 31 H 0.057 0.943 32 H 0.088 0.912 33 H 0.067 0.933 34 H 0.061 0.939 35 H 0.087 0.913 36 H 0.059 0.941 37 H 0.064 0.936 38 H 0.026 0.974 39 H 0.065 0.935 40 H 0.103 0.897 41 H 0.403 0.597 42 H 0.056 0.944 43 H 0.024 0.976 44 H 0.378 0.622 45 H 0.246 0.754 46 H 0.069 0.931 47 H 0.035 0.965 48 H 0.043 0.957 49 H 0.057 0.943 50 H 0.062 0.938 51 H 0.072 0.928 52 H 0.075 0.925 53 H 0.045 0.955 54 H 0.079 0.921 55 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.030 -5.575 -4.663 14.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.318 6.318 3 C 0.058 3.942 4 H 0.109 0.891 5 C -0.189 4.189 6 C -0.145 4.145 7 C -0.161 4.161 8 C -0.137 4.137 9 C -0.123 4.123 10 H 0.133 0.867 11 C 0.301 3.699 12 O -0.451 6.451 13 N -0.351 5.351 14 C 0.002 3.998 15 C 0.100 3.900 16 N -0.347 5.347 17 C -0.334 4.334 18 H 0.073 0.927 19 C -0.247 4.247 20 N -0.606 5.606 21 Si 0.770 3.230 22 H -0.223 1.223 23 H -0.224 1.224 24 H -0.214 1.214 25 C -0.156 4.156 26 C -0.143 4.143 27 C -0.145 4.145 28 C -0.149 4.149 29 C -0.145 4.145 30 H 0.062 0.938 31 H 0.076 0.924 32 H 0.106 0.894 33 H 0.086 0.914 34 H 0.080 0.920 35 H 0.105 0.895 36 H 0.078 0.922 37 H 0.083 0.917 38 H 0.045 0.955 39 H 0.083 0.917 40 H 0.122 0.878 41 H 0.239 0.761 42 H 0.075 0.925 43 H 0.043 0.957 44 H 0.212 0.788 45 H 0.055 0.945 46 H 0.087 0.913 47 H 0.054 0.946 48 H 0.062 0.938 49 H 0.076 0.924 50 H 0.080 0.920 51 H 0.090 0.910 52 H 0.093 0.907 53 H 0.064 0.936 54 H 0.097 0.903 55 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -13.169 -6.107 -3.792 15.004 hybrid contribution 0.784 1.455 0.832 1.850 sum -12.385 -4.653 -2.961 13.558 Atomic orbital electron populations 1.22940 0.80291 1.03297 1.00678 1.88045 1.20637 1.28099 1.95043 1.21850 0.92476 0.84725 0.95152 0.89067 1.22202 1.01456 0.97330 0.97869 1.21461 0.95908 0.96549 1.00564 1.21524 0.97562 1.00788 0.96271 1.21464 1.01457 0.93747 0.97014 1.21536 0.94001 0.95602 1.01174 0.86687 1.20810 0.82356 0.82351 0.84341 1.90580 1.76019 1.50777 1.27742 1.45772 1.12400 1.45031 1.31872 1.21581 0.91334 0.91560 0.95346 1.19997 0.89652 0.85937 0.94387 1.42423 1.74679 1.12367 1.05185 1.19097 1.34358 0.92235 0.87755 0.92673 1.24994 1.04512 0.97936 0.97255 1.69728 1.56040 1.14149 1.20679 0.85688 0.77410 0.78896 0.81042 1.22332 1.22387 1.21355 1.21803 0.96555 0.98847 0.98345 1.21303 0.96430 1.00190 0.96375 1.21452 0.99121 0.98865 0.95065 1.21434 0.95086 0.99834 0.98554 1.21646 0.97771 1.00788 0.94279 0.93810 0.92430 0.89362 0.91404 0.92009 0.89460 0.92234 0.91679 0.95471 0.91672 0.87812 0.76106 0.92544 0.95722 0.78822 0.94484 0.91279 0.94568 0.93847 0.92428 0.91971 0.90978 0.90669 0.93592 0.90276 0.92141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.47 10.82 113.37 1.23 1.69 16 2 O -0.40 -11.51 9.25 -131.52 -1.22 -12.73 16 3 C 0.12 2.99 2.18 30.59 0.07 3.05 16 4 H 0.09 1.76 7.79 -2.39 -0.02 1.74 16 5 C -0.15 -4.27 5.24 30.59 0.16 -4.11 16 6 C -0.11 -2.74 5.92 30.59 0.18 -2.56 16 7 C -0.12 -3.83 5.70 30.59 0.17 -3.66 16 8 C -0.10 -2.64 5.36 30.61 0.16 -2.48 16 9 C -0.10 -2.83 2.76 -11.52 -0.03 -2.86 16 10 H 0.12 2.72 8.14 -2.39 -0.02 2.70 16 11 C 0.51 18.58 5.49 87.65 0.48 19.06 16 12 O -0.57 -24.48 12.96 14.43 0.19 -24.29 16 13 N -0.70 -25.12 4.99 -463.05 -2.31 -27.43 16 14 C 0.13 4.84 4.31 86.38 0.37 5.22 16 15 C 0.19 6.73 0.40 3.60 0.00 6.73 16 16 N -0.71 -30.56 3.46 -303.35 -1.05 -31.61 16 17 C -0.20 -10.27 8.73 84.03 0.73 -9.54 16 18 H 0.06 2.93 6.75 -2.91 -0.02 2.91 16 19 C -0.05 -2.91 5.50 84.86 0.47 -2.44 16 20 N -0.95 -53.62 13.07 21.65 0.28 -53.34 16 21 Si 0.94 45.79 29.55 68.60 2.03 47.82 16 22 H -0.30 -14.45 7.11 99.48 0.71 -13.75 16 23 H -0.30 -14.62 7.11 99.48 0.71 -13.91 16 24 H -0.29 -14.05 7.11 99.48 0.71 -13.35 16 25 C -0.12 -3.93 4.57 30.59 0.14 -3.79 16 26 C -0.11 -3.38 5.77 30.59 0.18 -3.21 16 27 C -0.11 -2.82 5.92 30.59 0.18 -2.64 16 28 C -0.11 -3.07 5.75 30.59 0.18 -2.89 16 29 C -0.11 -3.07 4.66 30.59 0.14 -2.93 16 30 H 0.04 0.78 7.87 -2.39 -0.02 0.76 16 31 H 0.06 0.85 8.09 -2.39 -0.02 0.83 16 32 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.07 1.68 7.87 -2.39 -0.02 1.66 16 34 H 0.06 2.31 5.51 -2.39 -0.01 2.29 16 35 H 0.09 1.71 8.14 -2.38 -0.02 1.69 16 36 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 37 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 38 H 0.03 1.06 7.22 -2.38 -0.02 1.04 16 39 H 0.06 1.98 7.57 -2.39 -0.02 1.96 16 40 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 41 H 0.40 14.08 6.79 -92.71 -0.63 13.45 16 42 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 43 H 0.02 1.10 7.57 -2.38 -0.02 1.08 16 44 H 0.38 17.58 6.53 -92.71 -0.60 16.98 16 45 H 0.25 13.78 8.31 -92.71 -0.77 13.01 16 46 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 47 H 0.04 1.40 7.18 -2.39 -0.02 1.38 16 48 H 0.04 1.72 7.61 -2.38 -0.02 1.70 16 49 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 50 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 51 H 0.07 1.62 8.14 -2.38 -0.02 1.60 16 52 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 53 H 0.05 1.53 6.86 -2.39 -0.02 1.51 16 54 H 0.08 1.99 8.14 -2.38 -0.02 1.97 16 55 H 0.06 1.72 7.26 -2.39 -0.02 1.70 16 Total: -1.00 -64.45 406.29 2.36 -62.09 By element: Atomic # 1 Polarization: 47.21 SS G_CDS: -0.37 Total: 46.84 kcal Atomic # 6 Polarization: -12.15 SS G_CDS: 4.81 Total: -7.34 kcal Atomic # 7 Polarization: -109.31 SS G_CDS: -3.08 Total: -112.39 kcal Atomic # 8 Polarization: -35.99 SS G_CDS: -1.03 Total: -37.02 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 2.03 Total: 47.82 kcal Total: -64.45 2.36 -62.09 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120226528.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.414 kcal (2) G-P(sol) polarization free energy of solvation -64.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds