Wall clock time and date at job start Tue Mar 31 2020 22:51:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42895 * 114.00211 * 2 1 4 4 H 1.09002 * 109.47480 * 330.00007 * 3 2 1 5 5 C 1.53001 * 109.47342 * 89.99702 * 3 2 1 6 6 C 1.53000 * 109.47262 * 180.02562 * 5 3 2 7 7 C 1.53003 * 109.47336 * 300.00112 * 6 5 3 8 8 C 1.53001 * 109.47036 * 59.99750 * 7 6 5 9 9 C 1.53000 * 109.47262 * 300.00296 * 8 7 6 10 10 H 1.08997 * 109.46950 * 299.99952 * 9 8 7 11 11 C 1.50700 * 109.47252 * 179.97438 * 9 8 7 12 12 O 1.21282 * 120.00189 * 240.00257 * 11 9 8 13 13 N 1.34780 * 119.99805 * 60.00002 * 11 9 8 14 14 C 1.46501 * 119.99872 * 180.02562 * 13 11 9 15 15 C 1.53005 * 109.47036 * 176.63130 * 14 13 11 16 16 N 1.46497 * 109.47109 * 54.62760 * 15 14 13 17 17 C 1.36938 * 119.99775 * 62.80800 * 16 15 14 18 18 H 1.07993 * 120.00669 * 354.24855 * 17 16 15 19 19 C 1.38814 * 119.99883 * 174.24212 * 17 16 15 20 20 N 1.31618 * 119.99771 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 120.00159 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47169 * 0.02562 * 21 19 17 23 23 H 1.48498 * 109.46997 * 120.00260 * 21 19 17 24 24 H 1.48499 * 109.46959 * 240.00093 * 21 19 17 25 25 C 1.52992 * 109.46820 * 294.62926 * 15 14 13 26 26 C 1.53001 * 109.47186 * 180.02562 * 25 15 14 27 27 C 1.53000 * 109.47345 * 59.99136 * 26 25 15 28 28 C 1.52995 * 109.47474 * 300.01061 * 27 26 25 29 29 C 1.52991 * 109.47402 * 59.99453 * 28 27 26 30 30 H 1.09003 * 109.46926 * 60.00146 * 1 2 3 31 31 H 1.08997 * 109.47368 * 300.00441 * 1 2 3 32 32 H 1.08997 * 109.47270 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.47230 * 299.99780 * 5 3 2 34 34 H 1.08997 * 109.47099 * 60.00246 * 5 3 2 35 35 H 1.08996 * 109.47442 * 59.99852 * 6 5 3 36 36 H 1.08999 * 109.47084 * 180.02562 * 6 5 3 37 37 H 1.09001 * 109.47425 * 179.97438 * 7 6 5 38 38 H 1.09002 * 109.46906 * 300.00594 * 7 6 5 39 39 H 1.08997 * 109.47099 * 60.00156 * 8 7 6 40 40 H 1.09004 * 109.47423 * 180.02562 * 8 7 6 41 41 H 0.97000 * 119.99820 * 0.02562 * 13 11 9 42 42 H 1.08998 * 109.46978 * 296.62874 * 14 13 11 43 43 H 1.08994 * 109.47441 * 56.62958 * 14 13 11 44 44 H 0.96998 * 120.00239 * 242.81422 * 16 15 14 45 45 H 0.97007 * 120.00254 * 179.97438 * 20 19 17 46 46 H 1.09001 * 109.47278 * 299.99593 * 25 15 14 47 47 H 1.09003 * 109.47469 * 59.99903 * 25 15 14 48 48 H 1.09006 * 109.46643 * 300.00179 * 26 25 15 49 49 H 1.08997 * 109.47882 * 179.97438 * 26 25 15 50 50 H 1.09000 * 109.47071 * 179.97438 * 27 26 25 51 51 H 1.09006 * 109.46398 * 60.00893 * 27 26 25 52 52 H 1.09007 * 109.46684 * 299.99167 * 28 27 26 53 53 H 1.09003 * 109.47259 * 179.97438 * 28 27 26 54 54 H 1.09002 * 109.47137 * 180.02562 * 29 28 27 55 55 H 1.09007 * 109.47434 * 60.00173 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3451 1.9994 -0.5138 5 6 2.2177 1.7714 1.4425 6 6 2.8394 3.1693 1.4425 7 6 4.1881 3.1277 0.7211 8 6 3.9807 2.6618 -0.7214 9 6 3.3589 1.2638 -0.7214 10 1 4.0245 0.5702 -0.2077 11 6 3.1540 0.8051 -2.1422 12 8 2.0394 0.5377 -2.5384 13 7 4.2096 0.6920 -2.9726 14 6 4.0104 0.2466 -4.3540 15 6 5.3457 0.2852 -5.0999 16 7 6.3394 -0.4997 -4.3633 17 6 6.1540 -1.8447 -4.1848 18 1 5.2336 -2.3102 -4.5047 19 6 7.1494 -2.6100 -3.5928 20 7 8.2711 -2.0427 -3.2025 21 14 6.8969 -4.4449 -3.3499 22 1 5.5618 -4.8340 -3.8705 23 1 7.9505 -5.1909 -4.0838 24 1 6.9781 -4.7684 -1.9029 25 6 5.8237 1.7340 -5.2151 26 6 7.1587 1.7727 -5.9616 27 6 6.9777 1.1824 -7.3614 28 6 6.4996 -0.2664 -7.2461 29 6 5.1646 -0.3051 -6.4998 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 1.2569 1.8015 1.9563 34 1 2.8829 1.0775 1.9563 35 1 2.1739 3.8630 0.9287 36 1 2.9876 3.5011 2.4701 37 1 4.6308 4.1238 0.7206 38 1 4.8536 2.4340 1.2348 39 1 3.3151 3.3554 -1.2352 40 1 4.9415 2.6317 -1.2353 41 1 5.1011 0.9054 -2.6556 42 1 3.6230 -0.7723 -4.3549 43 1 3.2982 0.9064 -4.8494 44 1 7.1286 -0.0668 -4.0019 45 1 8.9666 -2.5773 -2.7884 46 1 5.0844 2.3180 -5.7633 47 1 5.9523 2.1546 -4.2178 48 1 7.8982 1.1885 -5.4138 49 1 7.4991 2.8049 -6.0441 50 1 7.9287 1.2105 -7.8933 51 1 6.2382 1.7666 -7.9092 52 1 7.2392 -0.8505 -6.6984 53 1 6.3702 -0.6868 -8.2435 54 1 4.8243 -1.3373 -6.4173 55 1 4.4250 0.2791 -7.0475 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001120226529.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:51:00 Heat of formation + Delta-G solvation = -123.249789 kcal Electronic energy + Delta-G solvation = -32189.764759 eV Core-core repulsion = 28224.602561 eV Total energy + Delta-G solvation = -3965.162197 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.40050 -40.27780 -38.97073 -37.28346 -35.81954 -35.01033 -33.00189 -31.97485 -31.53659 -30.90250 -30.16078 -27.44348 -26.71091 -25.70316 -24.35900 -23.41697 -23.13477 -21.79472 -21.26168 -20.75215 -19.79535 -19.03988 -18.20832 -17.60756 -17.05290 -16.70152 -16.22578 -16.10609 -15.89771 -15.79956 -15.59892 -15.26700 -15.01552 -14.90412 -14.63923 -14.45491 -14.29352 -14.05467 -13.71388 -13.45333 -13.40289 -13.21765 -13.07172 -12.90457 -12.82544 -12.62560 -12.59337 -12.48852 -12.24605 -12.03607 -11.99748 -11.87573 -11.77233 -11.67681 -11.48034 -11.31525 -11.28002 -11.08058 -10.80904 -10.69318 -10.61606 -10.28130 -9.81911 -8.89558 -7.87974 -5.11526 1.42034 1.46241 1.51812 1.79422 2.40834 2.58751 2.84700 3.45186 3.62017 3.69946 3.82482 3.94327 3.98804 4.03345 4.14941 4.19061 4.23066 4.25733 4.31905 4.40835 4.42546 4.45522 4.50069 4.51678 4.58392 4.68301 4.77293 4.77809 4.81765 4.82601 4.86800 4.92181 4.93221 4.98488 5.05183 5.08852 5.14162 5.18983 5.19414 5.22866 5.27577 5.32668 5.47863 5.49795 5.50972 5.52372 5.61079 5.62559 5.73862 5.81938 6.35129 6.35706 6.75328 7.41424 7.44682 8.17391 8.43786 9.34534 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.010125 B = 0.003923 C = 0.003414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2764.648839 B = 7135.985887 C = 8198.428024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.406 6.406 3 C 0.111 3.889 4 H 0.059 0.941 5 C -0.136 4.136 6 C -0.113 4.113 7 C -0.118 4.118 8 C -0.102 4.102 9 C -0.103 4.103 10 H 0.092 0.908 11 C 0.511 3.489 12 O -0.582 6.582 13 N -0.699 5.699 14 C 0.124 3.876 15 C 0.190 3.810 16 N -0.707 5.707 17 C -0.203 4.203 18 H 0.058 0.942 19 C -0.061 4.061 20 N -0.958 5.958 21 Si 0.942 3.058 22 H -0.281 1.281 23 H -0.296 1.296 24 H -0.300 1.300 25 C -0.106 4.106 26 C -0.112 4.112 27 C -0.107 4.107 28 C -0.106 4.106 29 C -0.113 4.113 30 H 0.033 0.967 31 H 0.058 0.942 32 H 0.083 0.917 33 H 0.075 0.925 34 H 0.064 0.936 35 H 0.070 0.930 36 H 0.084 0.916 37 H 0.088 0.912 38 H 0.064 0.936 39 H 0.072 0.928 40 H 0.077 0.923 41 H 0.405 0.595 42 H 0.024 0.976 43 H 0.063 0.937 44 H 0.378 0.622 45 H 0.246 0.754 46 H 0.082 0.918 47 H 0.063 0.937 48 H 0.043 0.957 49 H 0.076 0.924 50 H 0.059 0.941 51 H 0.073 0.927 52 H 0.040 0.960 53 H 0.056 0.944 54 H 0.035 0.965 55 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.074 15.948 4.041 18.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.325 6.325 3 C 0.053 3.947 4 H 0.077 0.923 5 C -0.174 4.174 6 C -0.150 4.150 7 C -0.155 4.155 8 C -0.140 4.140 9 C -0.124 4.124 10 H 0.110 0.890 11 C 0.298 3.702 12 O -0.463 6.463 13 N -0.349 5.349 14 C -0.002 4.002 15 C 0.099 3.901 16 N -0.348 5.348 17 C -0.336 4.336 18 H 0.076 0.924 19 C -0.254 4.254 20 N -0.610 5.610 21 Si 0.775 3.225 22 H -0.206 1.206 23 H -0.224 1.224 24 H -0.228 1.228 25 C -0.144 4.144 26 C -0.150 4.150 27 C -0.145 4.145 28 C -0.144 4.144 29 C -0.153 4.153 30 H 0.052 0.948 31 H 0.076 0.924 32 H 0.102 0.898 33 H 0.093 0.907 34 H 0.083 0.917 35 H 0.089 0.911 36 H 0.103 0.897 37 H 0.107 0.893 38 H 0.083 0.917 39 H 0.091 0.909 40 H 0.096 0.904 41 H 0.241 0.759 42 H 0.042 0.958 43 H 0.081 0.919 44 H 0.211 0.789 45 H 0.055 0.945 46 H 0.100 0.900 47 H 0.082 0.918 48 H 0.062 0.938 49 H 0.094 0.906 50 H 0.078 0.922 51 H 0.092 0.908 52 H 0.059 0.941 53 H 0.074 0.926 54 H 0.054 0.946 55 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -9.811 15.414 3.715 18.645 hybrid contribution 0.484 -1.719 0.369 1.824 sum -9.327 13.694 4.084 17.065 Atomic orbital electron populations 1.22746 0.80222 1.02825 1.00007 1.87873 1.20977 1.28624 1.95071 1.21899 0.92514 0.84501 0.95757 0.92284 1.22035 1.02098 0.98230 0.94992 1.21517 0.96466 0.95213 1.01842 1.21578 0.97719 1.02556 0.93637 1.21516 1.00986 0.92094 0.99365 1.21520 0.98918 1.00588 0.91390 0.88964 1.20959 0.84205 0.76913 0.88148 1.90601 1.25531 1.52087 1.78038 1.45776 1.10191 1.66804 1.12081 1.21671 0.98840 0.97393 0.82318 1.20024 0.87475 0.92091 0.90500 1.42446 1.23930 1.04616 1.63787 1.19182 0.98498 0.85942 1.29950 0.92443 1.25103 0.96677 0.99941 1.03691 1.69744 1.07386 1.35007 1.48829 0.85524 0.76753 0.83663 0.76572 1.20600 1.22365 1.22825 1.21644 0.97886 0.94081 1.00742 1.21436 0.96904 1.00635 0.95979 1.21447 1.00967 0.95240 0.96816 1.21299 0.96985 0.97495 0.98583 1.21774 0.97642 0.99827 0.96079 0.94847 0.92352 0.89838 0.90665 0.91673 0.91143 0.89741 0.89343 0.91689 0.90883 0.90388 0.75911 0.95777 0.91859 0.78858 0.94454 0.89953 0.91826 0.93808 0.90558 0.92230 0.90793 0.94072 0.92565 0.94631 0.91035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.98 10.82 113.37 1.23 2.20 16 2 O -0.41 -13.20 9.25 -131.51 -1.22 -14.42 16 3 C 0.11 2.96 1.58 30.60 0.05 3.01 16 4 H 0.06 1.59 7.74 -2.39 -0.02 1.57 16 5 C -0.14 -2.66 5.54 30.59 0.17 -2.49 16 6 C -0.11 -1.65 5.92 30.60 0.18 -1.47 16 7 C -0.12 -1.84 5.92 30.60 0.18 -1.66 16 8 C -0.10 -2.07 5.10 30.59 0.16 -1.91 16 9 C -0.10 -2.88 2.27 -11.54 -0.03 -2.91 16 10 H 0.09 2.79 8.14 -2.39 -0.02 2.77 16 11 C 0.51 18.23 7.01 87.66 0.61 18.84 16 12 O -0.58 -24.55 15.28 14.43 0.22 -24.33 16 13 N -0.70 -24.37 4.99 -463.05 -2.31 -26.68 16 14 C 0.12 4.58 4.37 86.38 0.38 4.95 16 15 C 0.19 6.63 0.41 3.60 0.00 6.63 16 16 N -0.71 -31.03 3.40 -303.36 -1.03 -32.06 16 17 C -0.20 -10.56 8.70 84.03 0.73 -9.83 16 18 H 0.06 3.10 6.77 -2.91 -0.02 3.08 16 19 C -0.06 -3.40 5.50 84.86 0.47 -2.93 16 20 N -0.96 -55.48 13.07 21.65 0.28 -55.19 16 21 Si 0.94 46.84 29.55 68.60 2.03 48.87 16 22 H -0.28 -13.73 7.11 99.48 0.71 -13.02 16 23 H -0.30 -14.73 7.11 99.48 0.71 -14.02 16 24 H -0.30 -15.16 7.11 99.48 0.71 -14.45 16 25 C -0.11 -2.93 4.65 30.59 0.14 -2.79 16 26 C -0.11 -3.08 5.75 30.59 0.18 -2.91 16 27 C -0.11 -2.86 5.92 30.59 0.18 -2.68 16 28 C -0.11 -3.50 5.76 30.59 0.18 -3.33 16 29 C -0.11 -3.87 4.52 30.59 0.14 -3.74 16 30 H 0.03 0.90 8.09 -2.39 -0.02 0.88 16 31 H 0.06 1.14 7.87 -2.39 -0.02 1.12 16 32 H 0.08 1.99 8.14 -2.39 -0.02 1.98 16 33 H 0.07 1.30 7.87 -2.39 -0.02 1.28 16 34 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 39 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 40 H 0.08 1.55 7.56 -2.38 -0.02 1.53 16 41 H 0.40 13.60 6.81 -92.71 -0.63 12.96 16 42 H 0.02 1.06 7.50 -2.39 -0.02 1.04 16 43 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 44 H 0.38 17.78 6.63 -92.71 -0.61 17.16 16 45 H 0.25 14.14 8.31 -92.70 -0.77 13.37 16 46 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 47 H 0.06 1.70 7.28 -2.39 -0.02 1.68 16 48 H 0.04 1.49 6.92 -2.38 -0.02 1.48 16 49 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 50 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 51 H 0.07 1.65 8.14 -2.38 -0.02 1.63 16 52 H 0.04 1.71 7.61 -2.38 -0.02 1.69 16 53 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 54 H 0.03 1.39 7.23 -2.39 -0.02 1.37 16 55 H 0.07 2.05 8.14 -2.38 -0.02 2.03 16 Total: -1.00 -66.53 412.93 2.53 -64.00 By element: Atomic # 1 Polarization: 43.20 SS G_CDS: -0.39 Total: 42.82 kcal Atomic # 6 Polarization: -7.94 SS G_CDS: 4.94 Total: -3.00 kcal Atomic # 7 Polarization: -110.88 SS G_CDS: -3.06 Total: -113.94 kcal Atomic # 8 Polarization: -37.75 SS G_CDS: -1.00 Total: -38.75 kcal Atomic # 14 Polarization: 46.84 SS G_CDS: 2.03 Total: 48.87 kcal Total: -66.53 2.53 -64.00 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120226529.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.246 kcal (2) G-P(sol) polarization free energy of solvation -66.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds