Wall clock time and date at job start Tue Mar 31 2020 22:51:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42897 * 113.99847 * 2 1 4 4 H 1.08997 * 109.47539 * 29.99926 * 3 2 1 5 5 C 1.53002 * 109.47434 * 269.99712 * 3 2 1 6 6 C 1.52993 * 109.47204 * 179.97438 * 5 3 2 7 7 C 1.52998 * 109.47117 * 60.00687 * 6 5 3 8 8 C 1.53006 * 109.46920 * 299.99387 * 7 6 5 9 9 C 1.53003 * 109.46776 * 60.00348 * 8 7 6 10 10 H 1.08996 * 109.47163 * 59.99426 * 9 8 7 11 11 C 1.50697 * 109.47125 * 180.02562 * 9 8 7 12 12 O 1.21280 * 120.00183 * 119.99774 * 11 9 8 13 13 N 1.34773 * 119.99848 * 299.99757 * 11 9 8 14 14 C 1.46504 * 120.00118 * 179.97438 * 13 11 9 15 15 C 1.53000 * 109.47317 * 176.26324 * 14 13 11 16 16 N 1.46499 * 109.47087 * 54.66753 * 15 14 13 17 17 C 1.36937 * 120.00036 * 63.15297 * 16 15 14 18 18 H 1.07998 * 120.00058 * 353.80211 * 17 16 15 19 19 C 1.38810 * 120.00062 * 173.80071 * 17 16 15 20 20 N 1.31615 * 120.00240 * 179.97438 * 19 17 16 21 21 Si 1.86805 * 120.00017 * 0.02562 * 19 17 16 22 22 H 1.48505 * 109.47148 * 89.99855 * 21 19 17 23 23 H 1.48503 * 109.47100 * 209.99933 * 21 19 17 24 24 H 1.48503 * 109.47157 * 330.00074 * 21 19 17 25 25 C 1.53002 * 109.47166 * 294.66843 * 15 14 13 26 26 C 1.53000 * 109.47166 * 180.02562 * 25 15 14 27 27 C 1.52993 * 109.47342 * 60.00061 * 26 25 15 28 28 C 1.53002 * 109.46940 * 300.00077 * 27 26 25 29 29 C 1.52993 * 109.47342 * 174.66904 * 15 14 13 30 30 H 1.08999 * 109.47121 * 60.00190 * 1 2 3 31 31 H 1.08999 * 109.47565 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47092 * 299.99995 * 1 2 3 33 33 H 1.08998 * 109.47366 * 300.00893 * 5 3 2 34 34 H 1.09004 * 109.46624 * 60.00511 * 5 3 2 35 35 H 1.08997 * 109.47687 * 300.00163 * 6 5 3 36 36 H 1.09007 * 109.47120 * 180.02562 * 6 5 3 37 37 H 1.09002 * 109.47227 * 180.02562 * 7 6 5 38 38 H 1.08995 * 109.47486 * 59.99715 * 7 6 5 39 39 H 1.09004 * 109.47021 * 179.97438 * 8 7 6 40 40 H 1.08995 * 109.47309 * 300.00437 * 8 7 6 41 41 H 0.97005 * 120.00186 * 359.97438 * 13 11 9 42 42 H 1.08997 * 109.47234 * 296.26674 * 14 13 11 43 43 H 1.09004 * 109.46576 * 56.26488 * 14 13 11 44 44 H 0.97006 * 120.00066 * 243.15934 * 16 15 14 45 45 H 0.97002 * 120.00078 * 179.97438 * 20 19 17 46 46 H 1.09000 * 109.46993 * 299.99955 * 25 15 14 47 47 H 1.09004 * 109.47036 * 60.00010 * 25 15 14 48 48 H 1.08999 * 109.46698 * 299.99553 * 26 25 15 49 49 H 1.08999 * 109.47158 * 180.02562 * 26 25 15 50 50 H 1.08997 * 109.47614 * 180.02562 * 27 26 25 51 51 H 1.09000 * 109.47162 * 59.99834 * 27 26 25 52 52 H 1.09000 * 109.46993 * 299.99860 * 28 27 26 53 53 H 1.09000 * 109.47297 * 180.02562 * 28 27 26 54 54 H 1.08999 * 109.47153 * 300.00199 * 29 15 14 55 55 H 1.09000 * 109.47162 * 59.99834 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 1.9994 0.5138 5 6 2.2177 1.7714 -1.4425 6 6 2.8394 3.1693 -1.4424 7 6 4.1880 3.1277 -0.7211 8 6 3.9805 2.6619 0.7215 9 6 3.3588 1.2638 0.7214 10 1 4.0244 0.5702 0.2077 11 6 3.1539 0.8052 2.1422 12 8 2.0392 0.5378 2.5384 13 7 4.2093 0.6921 2.9727 14 6 4.0101 0.2467 4.3541 15 6 5.3672 0.1156 5.0484 16 7 6.0977 1.3804 4.9355 17 6 5.5974 2.5144 5.5177 18 1 4.6183 2.5006 5.9734 19 6 6.3486 3.6816 5.5223 20 7 5.8676 4.7717 6.0814 21 14 8.0418 3.7057 4.7336 22 1 7.9165 4.0863 3.3036 23 1 8.9007 4.6933 5.4352 24 1 8.6543 2.3567 4.8349 25 6 6.1747 -1.0009 4.3833 26 6 7.5315 -1.1324 5.0780 27 6 7.3176 -1.4683 6.5552 28 6 6.5101 -0.3519 7.2204 29 6 5.1539 -0.2200 6.5258 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 2.8829 1.0775 -1.9564 34 1 1.2568 1.8015 -1.9563 35 1 2.1738 3.8630 -0.9288 36 1 2.9868 3.5015 -2.4701 37 1 4.6307 4.1238 -0.7206 38 1 4.8536 2.4341 -1.2347 39 1 4.9414 2.6318 1.2353 40 1 3.3149 3.3555 1.2352 41 1 5.1010 0.9056 2.6557 42 1 3.3986 0.9754 4.8861 43 1 3.5066 -0.7200 4.3550 44 1 6.9358 1.4147 4.4483 45 1 6.3927 5.5873 6.0849 46 1 5.6311 -1.9419 4.4673 47 1 6.3267 -0.7617 3.3307 48 1 8.0752 -0.1914 4.9944 49 1 8.1069 -1.9275 4.6039 50 1 8.2841 -1.5616 7.0503 51 1 6.7738 -2.4093 6.6389 52 1 7.0539 0.5891 7.1368 53 1 6.3581 -0.5909 8.2730 54 1 4.5786 0.5753 6.9997 55 1 4.6103 -1.1611 6.6098 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001120226530.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:51:04 Heat of formation + Delta-G solvation = -120.920118 kcal Electronic energy + Delta-G solvation = -32319.834568 eV Core-core repulsion = 28354.773392 eV Total energy + Delta-G solvation = -3965.061175 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.44197 -40.37821 -38.99989 -37.29330 -35.88382 -35.04636 -33.18809 -32.17531 -31.60495 -30.92456 -30.63676 -27.44012 -26.74444 -25.39906 -24.39567 -23.47995 -23.14370 -21.82153 -21.31646 -20.77637 -19.77966 -19.69335 -18.27171 -17.60906 -17.05159 -16.56135 -16.34311 -16.23560 -15.98729 -15.87906 -15.58514 -15.18756 -14.95113 -14.85001 -14.76655 -14.53401 -14.26642 -14.18444 -13.92844 -13.58715 -13.55082 -13.32331 -13.09368 -12.95004 -12.81570 -12.65995 -12.62716 -12.37445 -12.27995 -12.09523 -12.03432 -11.89921 -11.79403 -11.67889 -11.50584 -11.33357 -11.30821 -11.16260 -10.84491 -10.74108 -10.64651 -10.29775 -9.86259 -9.23198 -7.91787 -5.25077 1.40289 1.44101 1.51431 1.76762 2.37812 2.55026 2.80458 3.38487 3.53991 3.60133 3.68105 3.88377 3.93999 3.96213 4.05918 4.17720 4.20039 4.24294 4.27460 4.36530 4.38954 4.44043 4.44131 4.51682 4.59480 4.62599 4.71409 4.73403 4.76882 4.82324 4.84506 4.87874 4.89623 4.93809 5.03156 5.05562 5.11954 5.15730 5.16515 5.21215 5.25600 5.29752 5.41811 5.42732 5.46098 5.48156 5.56802 5.66684 5.73234 5.90980 6.30834 6.31112 6.71800 7.18261 7.39535 7.91217 8.12920 9.30345 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.011216 B = 0.004099 C = 0.003412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2495.880515 B = 6829.683974 C = 8205.233296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.395 6.395 3 C 0.110 3.890 4 H 0.042 0.958 5 C -0.130 4.130 6 C -0.116 4.116 7 C -0.114 4.114 8 C -0.108 4.108 9 C -0.095 4.095 10 H 0.120 0.880 11 C 0.509 3.491 12 O -0.582 6.582 13 N -0.700 5.700 14 C 0.127 3.873 15 C 0.196 3.804 16 N -0.729 5.729 17 C -0.196 4.196 18 H 0.047 0.953 19 C -0.062 4.062 20 N -0.990 5.990 21 Si 0.943 3.057 22 H -0.276 1.276 23 H -0.311 1.311 24 H -0.246 1.246 25 C -0.111 4.111 26 C -0.115 4.115 27 C -0.109 4.109 28 C -0.108 4.108 29 C -0.113 4.113 30 H 0.056 0.944 31 H 0.092 0.908 32 H 0.024 0.976 33 H 0.081 0.919 34 H 0.074 0.926 35 H 0.055 0.945 36 H 0.089 0.911 37 H 0.073 0.927 38 H 0.084 0.916 39 H 0.071 0.929 40 H 0.047 0.953 41 H 0.405 0.595 42 H 0.021 0.979 43 H 0.063 0.937 44 H 0.367 0.633 45 H 0.252 0.748 46 H 0.085 0.915 47 H 0.069 0.931 48 H 0.046 0.954 49 H 0.082 0.918 50 H 0.064 0.936 51 H 0.074 0.926 52 H 0.042 0.958 53 H 0.055 0.945 54 H 0.030 0.970 55 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.567 -12.272 -15.413 19.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.314 6.314 3 C 0.052 3.948 4 H 0.061 0.939 5 C -0.168 4.168 6 C -0.154 4.154 7 C -0.152 4.152 8 C -0.146 4.146 9 C -0.116 4.116 10 H 0.138 0.862 11 C 0.296 3.704 12 O -0.462 6.462 13 N -0.350 5.350 14 C 0.000 4.000 15 C 0.106 3.894 16 N -0.372 5.372 17 C -0.327 4.327 18 H 0.065 0.935 19 C -0.253 4.253 20 N -0.641 5.641 21 Si 0.771 3.229 22 H -0.202 1.202 23 H -0.239 1.239 24 H -0.170 1.170 25 C -0.149 4.149 26 C -0.153 4.153 27 C -0.146 4.146 28 C -0.145 4.145 29 C -0.153 4.153 30 H 0.074 0.926 31 H 0.111 0.889 32 H 0.043 0.957 33 H 0.100 0.900 34 H 0.093 0.907 35 H 0.074 0.926 36 H 0.108 0.892 37 H 0.092 0.908 38 H 0.102 0.898 39 H 0.090 0.910 40 H 0.065 0.935 41 H 0.241 0.759 42 H 0.040 0.960 43 H 0.081 0.919 44 H 0.201 0.799 45 H 0.061 0.939 46 H 0.103 0.897 47 H 0.088 0.912 48 H 0.065 0.935 49 H 0.100 0.900 50 H 0.082 0.918 51 H 0.093 0.907 52 H 0.061 0.939 53 H 0.074 0.926 54 H 0.049 0.951 55 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -1.363 -12.525 -14.994 19.584 hybrid contribution 0.681 1.397 0.389 1.602 sum -0.682 -11.128 -14.604 18.373 Atomic orbital electron populations 1.22754 0.80345 1.03106 0.99670 1.87809 1.20721 1.27820 1.95060 1.21855 0.92481 0.84613 0.95860 0.93932 1.21992 1.02329 0.97712 0.94748 1.21530 0.96234 0.95853 1.01755 1.21559 0.98070 1.02378 0.93153 1.21512 1.00582 0.93152 0.99402 1.21471 0.99092 0.99696 0.91363 0.86226 1.21029 0.84171 0.76703 0.88473 1.90615 1.25439 1.51845 1.78331 1.45720 1.10352 1.67336 1.11571 1.21615 0.98760 0.97575 0.82044 1.19974 0.89609 0.86025 0.93774 1.42680 1.25364 1.04730 1.64431 1.18683 0.99096 0.87860 1.27055 0.93499 1.25355 1.01839 0.95664 1.02408 1.69900 1.39819 1.01923 1.52474 0.85601 0.81090 0.77997 0.78212 1.20228 1.23886 1.17004 1.21720 0.96305 0.97614 0.99224 1.21499 0.96547 1.01392 0.95820 1.21474 0.99776 0.97981 0.95410 1.21316 0.95871 0.99001 0.98351 1.21729 0.97691 0.99937 0.95912 0.92578 0.88941 0.95678 0.90026 0.90692 0.92621 0.89248 0.90816 0.89781 0.90994 0.93450 0.75866 0.96022 0.91858 0.79889 0.93949 0.89689 0.91209 0.93532 0.89964 0.91767 0.90747 0.93867 0.92593 0.95116 0.90943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.89 10.82 113.37 1.23 2.12 16 2 O -0.40 -11.42 9.25 -131.51 -1.22 -12.63 16 3 C 0.11 2.89 1.58 30.60 0.05 2.94 16 4 H 0.04 1.29 7.74 -2.39 -0.02 1.27 16 5 C -0.13 -2.41 5.54 30.59 0.17 -2.24 16 6 C -0.12 -1.96 5.92 30.59 0.18 -1.78 16 7 C -0.11 -2.11 5.92 30.60 0.18 -1.93 16 8 C -0.11 -2.78 5.10 30.60 0.16 -2.62 16 9 C -0.10 -2.56 2.27 -11.54 -0.03 -2.58 16 10 H 0.12 2.71 8.14 -2.39 -0.02 2.69 16 11 C 0.51 17.96 7.01 87.66 0.61 18.57 16 12 O -0.58 -24.85 15.28 14.44 0.22 -24.63 16 13 N -0.70 -23.62 4.98 -463.06 -2.31 -25.93 16 14 C 0.13 4.64 4.37 86.38 0.38 5.02 16 15 C 0.20 6.60 0.41 3.60 0.00 6.60 16 16 N -0.73 -29.51 3.19 -303.36 -0.97 -30.48 16 17 C -0.20 -10.28 9.18 84.03 0.77 -9.51 16 18 H 0.05 2.86 7.01 -2.91 -0.02 2.84 16 19 C -0.06 -3.49 5.50 84.86 0.47 -3.02 16 20 N -0.99 -62.43 13.97 21.65 0.30 -62.13 16 21 Si 0.94 42.93 27.68 68.60 1.90 44.83 16 22 H -0.28 -12.05 7.11 99.48 0.71 -11.35 16 23 H -0.31 -15.06 7.11 99.48 0.71 -14.35 16 24 H -0.25 -9.86 6.61 99.48 0.66 -9.20 16 25 C -0.11 -2.81 4.65 30.60 0.14 -2.66 16 26 C -0.12 -2.77 5.75 30.59 0.18 -2.60 16 27 C -0.11 -2.65 5.92 30.59 0.18 -2.47 16 28 C -0.11 -3.42 5.76 30.58 0.18 -3.24 16 29 C -0.11 -3.85 4.51 30.57 0.14 -3.71 16 30 H 0.06 1.04 7.87 -2.39 -0.02 1.02 16 31 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 32 H 0.02 0.68 8.09 -2.39 -0.02 0.66 16 33 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.07 1.24 7.87 -2.38 -0.02 1.22 16 35 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.09 1.13 8.14 -2.38 -0.02 1.11 16 37 H 0.07 1.32 8.14 -2.39 -0.02 1.31 16 38 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 39 H 0.07 1.92 7.56 -2.38 -0.02 1.90 16 40 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 41 H 0.41 12.37 6.81 -92.70 -0.63 11.74 16 42 H 0.02 0.98 7.51 -2.39 -0.02 0.96 16 43 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 44 H 0.37 14.18 4.57 -92.70 -0.42 13.76 16 45 H 0.25 15.36 8.31 -92.71 -0.77 14.58 16 46 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 47 H 0.07 1.63 7.29 -2.38 -0.02 1.61 16 48 H 0.05 1.32 6.93 -2.39 -0.02 1.30 16 49 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 50 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 51 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 52 H 0.04 1.67 7.61 -2.39 -0.02 1.66 16 53 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 54 H 0.03 1.26 7.23 -2.39 -0.02 1.24 16 55 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 Total: -1.00 -71.64 409.92 2.67 -68.97 By element: Atomic # 1 Polarization: 45.36 SS G_CDS: -0.25 Total: 45.11 kcal Atomic # 6 Polarization: -8.09 SS G_CDS: 4.98 Total: -3.11 kcal Atomic # 7 Polarization: -115.57 SS G_CDS: -2.97 Total: -118.54 kcal Atomic # 8 Polarization: -36.26 SS G_CDS: -1.00 Total: -37.26 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 1.90 Total: 44.83 kcal Total: -71.64 2.67 -68.97 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120226530.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.948 kcal (2) G-P(sol) polarization free energy of solvation -71.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds