Wall clock time and date at job start Tue Mar 31 2020 22:51:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42900 * 114.00179 * 2 1 4 4 H 1.09003 * 109.47330 * 29.99761 * 3 2 1 5 5 C 1.53003 * 109.47028 * 270.00197 * 3 2 1 6 6 C 1.53005 * 109.47145 * 179.97438 * 5 3 2 7 7 C 1.53001 * 109.46746 * 60.00267 * 6 5 3 8 8 C 1.53005 * 109.46889 * 299.99442 * 7 6 5 9 9 C 1.52996 * 109.47316 * 150.00018 * 3 2 1 10 10 H 1.09000 * 109.47077 * 299.99537 * 9 3 2 11 11 C 1.50693 * 109.47094 * 60.00112 * 9 3 2 12 12 O 1.21280 * 120.00407 * 359.97438 * 11 9 3 13 13 N 1.34778 * 119.99876 * 179.97438 * 11 9 3 14 14 C 1.46507 * 119.99899 * 179.97438 * 13 11 9 15 15 C 1.52996 * 109.46864 * 176.08506 * 14 13 11 16 16 N 1.46507 * 109.47536 * 305.24932 * 15 14 13 17 17 C 1.36930 * 120.00026 * 300.01143 * 16 15 14 18 18 H 1.08002 * 120.00171 * 354.09075 * 17 16 15 19 19 C 1.38806 * 120.00320 * 174.08545 * 17 16 15 20 20 N 1.31621 * 119.99870 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 120.00600 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.46765 * 0.02562 * 21 19 17 23 23 H 1.48495 * 109.47235 * 119.99937 * 21 19 17 24 24 H 1.48492 * 109.47068 * 240.00234 * 21 19 17 25 25 C 1.53004 * 109.47110 * 185.25052 * 15 14 13 26 26 C 1.53000 * 109.47446 * 180.02562 * 25 15 14 27 27 C 1.53008 * 109.47020 * 59.99873 * 26 25 15 28 28 C 1.53004 * 109.47115 * 300.00330 * 27 26 25 29 29 C 1.52997 * 109.47298 * 65.25352 * 15 14 13 30 30 H 1.09000 * 109.47144 * 60.00090 * 1 2 3 31 31 H 1.08994 * 109.47256 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.47040 * 299.99770 * 1 2 3 33 33 H 1.09003 * 109.47046 * 59.99923 * 5 3 2 34 34 H 1.09003 * 109.46709 * 299.99944 * 5 3 2 35 35 H 1.08994 * 109.47290 * 300.00331 * 6 5 3 36 36 H 1.09000 * 109.46787 * 179.97438 * 6 5 3 37 37 H 1.08993 * 109.47885 * 59.99780 * 7 6 5 38 38 H 1.09000 * 109.47075 * 180.02562 * 7 6 5 39 39 H 1.09003 * 109.46855 * 180.02562 * 8 7 6 40 40 H 1.08993 * 109.47141 * 300.00241 * 8 7 6 41 41 H 0.97000 * 120.00068 * 0.02562 * 13 11 9 42 42 H 1.08987 * 109.47283 * 296.08803 * 14 13 11 43 43 H 1.08998 * 109.46583 * 56.09358 * 14 13 11 44 44 H 0.96998 * 119.99553 * 120.00944 * 16 15 14 45 45 H 0.96995 * 120.00466 * 179.97438 * 20 19 17 46 46 H 1.09005 * 109.47010 * 300.00068 * 25 15 14 47 47 H 1.09001 * 109.47019 * 60.00213 * 25 15 14 48 48 H 1.09000 * 109.47290 * 300.00400 * 26 25 15 49 49 H 1.08998 * 109.47212 * 179.97438 * 26 25 15 50 50 H 1.08997 * 109.47244 * 180.02562 * 27 26 25 51 51 H 1.09000 * 109.46658 * 60.00141 * 27 26 25 52 52 H 1.09000 * 109.46545 * 299.99844 * 28 27 26 53 53 H 1.08991 * 109.47090 * 179.97438 * 28 27 26 54 54 H 1.09010 * 109.47158 * 299.99595 * 29 15 14 55 55 H 1.09000 * 109.47437 * 59.99179 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 1.9994 0.5138 5 6 2.2177 1.7713 -1.4425 6 6 2.8394 3.1694 -1.4426 7 6 4.1881 3.1276 -0.7212 8 6 3.9806 2.6618 0.7213 9 6 3.3589 1.2632 0.7212 10 1 3.2111 0.9314 1.7489 11 6 4.2786 0.3039 0.0108 12 8 3.8933 -0.2882 -0.9750 13 7 5.5295 0.1039 0.4710 14 6 6.4235 -0.8292 -0.2193 15 6 7.8027 -0.7980 0.4423 16 7 8.2991 0.5800 0.4721 17 6 8.4777 1.2689 -0.6978 18 1 8.3446 0.7677 -1.6453 19 6 8.8296 2.6112 -0.6662 20 7 8.9921 3.2219 0.4884 21 14 9.0725 3.5511 -2.2621 22 1 8.8315 2.6436 -3.4126 23 1 8.1164 4.6859 -2.3187 24 1 10.4621 4.0710 -2.3237 25 6 8.7716 -1.6719 -0.3567 26 6 10.1506 -1.6413 0.3052 27 6 10.0421 -2.1758 1.7348 28 6 9.0732 -1.3019 2.5339 29 6 7.6947 -1.3322 1.8719 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.2568 1.8014 -1.9563 34 1 2.8829 1.0774 -1.9563 35 1 2.1740 3.8630 -0.9288 36 1 2.9876 3.5010 -2.4703 37 1 4.8537 2.4340 -1.2348 38 1 4.6309 4.1236 -0.7208 39 1 4.9414 2.6325 1.2354 40 1 3.3151 3.3555 1.2350 41 1 5.8377 0.5771 1.2597 42 1 6.0139 -1.8373 -0.1582 43 1 6.5158 -0.5372 -1.2654 44 1 8.5012 1.0044 1.3205 45 1 9.2384 4.1598 0.5106 46 1 8.4023 -2.6973 -0.3789 47 1 8.8485 -1.2914 -1.3753 48 1 10.5201 -0.6161 0.3278 49 1 10.8407 -2.2643 -0.2638 50 1 11.0244 -2.1536 2.2066 51 1 9.6725 -3.2010 1.7122 52 1 9.4428 -0.2767 2.5563 53 1 8.9955 -1.6829 3.5521 54 1 7.0044 -0.7096 2.4413 55 1 7.3253 -2.3575 1.8499 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001120226531.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:51:09 Heat of formation + Delta-G solvation = -115.453471 kcal Electronic energy + Delta-G solvation = -32869.443106 eV Core-core repulsion = 28904.618983 eV Total energy + Delta-G solvation = -3964.824124 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.58302 -40.28160 -38.72621 -37.12089 -35.80185 -34.98449 -32.98884 -31.94174 -31.53609 -30.82794 -30.13068 -27.33763 -26.73945 -25.66583 -24.25816 -23.41969 -23.15629 -22.12892 -21.57845 -20.39922 -19.72239 -18.97544 -17.84398 -17.42699 -16.96135 -16.71704 -16.42821 -16.14124 -15.91063 -15.80127 -15.56134 -15.15469 -14.95045 -14.87662 -14.60670 -14.45655 -14.29441 -14.14959 -13.51682 -13.38203 -13.33908 -13.20669 -13.00020 -12.91053 -12.86900 -12.74657 -12.58107 -12.47380 -12.39815 -12.02646 -11.92975 -11.90152 -11.71536 -11.66944 -11.41391 -11.32290 -11.20137 -11.12764 -10.75414 -10.67329 -10.36428 -10.25456 -9.70351 -8.85628 -7.84590 -5.07247 1.41081 1.46188 1.50747 1.91518 2.49534 2.60512 2.88820 3.48848 3.65348 3.75239 3.84284 3.94347 4.00144 4.05073 4.10412 4.15846 4.22174 4.29977 4.32440 4.42153 4.45587 4.49537 4.51982 4.57671 4.62002 4.67785 4.74579 4.77803 4.81564 4.83676 4.85687 4.92719 4.94233 4.98810 5.01868 5.10130 5.13329 5.17497 5.20013 5.23064 5.31562 5.36108 5.48319 5.49654 5.51774 5.54596 5.61360 5.66924 5.80515 5.83626 6.38529 6.42720 6.84962 7.48180 7.55109 8.20097 8.47719 9.37834 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.010493 B = 0.004727 C = 0.003632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2667.820800 B = 5922.604203 C = 7707.571320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.399 6.399 3 C 0.116 3.884 4 H 0.092 0.908 5 C -0.151 4.151 6 C -0.108 4.108 7 C -0.123 4.123 8 C -0.097 4.097 9 C -0.101 4.101 10 H 0.117 0.883 11 C 0.514 3.486 12 O -0.572 6.572 13 N -0.700 5.700 14 C 0.128 3.872 15 C 0.191 3.809 16 N -0.705 5.705 17 C -0.199 4.199 18 H 0.054 0.946 19 C -0.053 4.053 20 N -0.954 5.954 21 Si 0.934 3.066 22 H -0.284 1.284 23 H -0.298 1.298 24 H -0.298 1.298 25 C -0.116 4.116 26 C -0.105 4.105 27 C -0.108 4.108 28 C -0.112 4.112 29 C -0.107 4.107 30 H 0.043 0.957 31 H 0.088 0.912 32 H 0.058 0.942 33 H 0.067 0.933 34 H 0.061 0.939 35 H 0.087 0.913 36 H 0.057 0.943 37 H 0.026 0.974 38 H 0.060 0.940 39 H 0.065 0.935 40 H 0.103 0.897 41 H 0.403 0.597 42 H 0.056 0.944 43 H 0.025 0.975 44 H 0.378 0.622 45 H 0.246 0.754 46 H 0.069 0.931 47 H 0.034 0.966 48 H 0.042 0.958 49 H 0.057 0.943 50 H 0.061 0.939 51 H 0.072 0.928 52 H 0.045 0.955 53 H 0.075 0.925 54 H 0.061 0.939 55 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.290 -5.943 6.141 14.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.318 6.318 3 C 0.058 3.942 4 H 0.110 0.890 5 C -0.188 4.188 6 C -0.145 4.145 7 C -0.161 4.161 8 C -0.135 4.135 9 C -0.123 4.123 10 H 0.135 0.865 11 C 0.302 3.698 12 O -0.452 6.452 13 N -0.350 5.350 14 C 0.001 3.999 15 C 0.100 3.900 16 N -0.346 5.346 17 C -0.332 4.332 18 H 0.072 0.928 19 C -0.246 4.246 20 N -0.606 5.606 21 Si 0.767 3.233 22 H -0.210 1.210 23 H -0.226 1.226 24 H -0.226 1.226 25 C -0.155 4.155 26 C -0.143 4.143 27 C -0.145 4.145 28 C -0.149 4.149 29 C -0.145 4.145 30 H 0.062 0.938 31 H 0.107 0.893 32 H 0.076 0.924 33 H 0.086 0.914 34 H 0.080 0.920 35 H 0.106 0.894 36 H 0.076 0.924 37 H 0.045 0.955 38 H 0.079 0.921 39 H 0.084 0.916 40 H 0.122 0.878 41 H 0.238 0.762 42 H 0.074 0.926 43 H 0.044 0.956 44 H 0.212 0.788 45 H 0.055 0.945 46 H 0.088 0.912 47 H 0.053 0.947 48 H 0.061 0.939 49 H 0.075 0.925 50 H 0.080 0.920 51 H 0.091 0.909 52 H 0.064 0.936 53 H 0.094 0.906 54 H 0.079 0.921 55 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -12.439 -6.500 5.260 14.988 hybrid contribution 0.668 1.465 -0.991 1.890 sum -11.771 -5.035 4.269 13.496 Atomic orbital electron populations 1.22941 0.80292 1.03303 1.00679 1.88044 1.20637 1.28073 1.95038 1.21845 0.92526 0.84732 0.95075 0.89033 1.22202 1.01417 0.97243 0.97973 1.21464 0.95926 0.96635 1.00481 1.21506 0.97467 1.00629 0.96455 1.21446 1.01454 0.93761 0.96851 1.21535 0.93960 0.95548 1.01227 0.86520 1.20801 0.82417 0.82299 0.84309 1.90581 1.76020 1.50824 1.27745 1.45737 1.12381 1.45084 1.31788 1.21595 0.91326 0.91474 0.95474 1.20008 0.89708 0.85596 0.94702 1.42407 1.77243 1.09774 1.05137 1.19114 1.35714 0.91336 0.87023 0.92787 1.24962 1.04729 0.97481 0.97458 1.69724 1.56999 1.10343 1.23498 0.85659 0.76567 0.79181 0.81929 1.20980 1.22576 1.22617 1.21804 0.96376 0.98885 0.98478 1.21305 0.96139 1.00429 0.96433 1.21455 0.99219 0.99213 0.94609 1.21426 0.94787 0.99815 0.98887 1.21647 0.97711 1.01293 0.93867 0.93847 0.89345 0.92397 0.91401 0.92043 0.89432 0.92424 0.95473 0.92097 0.91604 0.87838 0.76159 0.92558 0.95647 0.78825 0.94509 0.91209 0.94701 0.93872 0.92463 0.92004 0.90928 0.93640 0.90614 0.92054 0.90113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.47 10.82 113.37 1.23 1.70 16 2 O -0.40 -11.57 9.24 -131.52 -1.22 -12.78 16 3 C 0.12 3.03 2.18 30.59 0.07 3.09 16 4 H 0.09 1.78 7.79 -2.39 -0.02 1.77 16 5 C -0.15 -4.36 5.24 30.60 0.16 -4.20 16 6 C -0.11 -2.86 5.92 30.60 0.18 -2.68 16 7 C -0.12 -3.96 5.70 30.60 0.17 -3.79 16 8 C -0.10 -2.64 5.36 30.61 0.16 -2.48 16 9 C -0.10 -2.83 2.76 -11.53 -0.03 -2.86 16 10 H 0.12 2.72 8.14 -2.39 -0.02 2.70 16 11 C 0.51 18.69 5.49 87.65 0.48 19.17 16 12 O -0.57 -24.75 12.96 14.43 0.19 -24.56 16 13 N -0.70 -24.92 5.03 -463.07 -2.33 -27.25 16 14 C 0.13 4.80 4.32 86.38 0.37 5.17 16 15 C 0.19 6.68 0.40 3.60 0.00 6.68 16 16 N -0.70 -30.55 3.55 -303.34 -1.08 -31.63 16 17 C -0.20 -10.20 8.73 84.03 0.73 -9.47 16 18 H 0.05 2.90 6.75 -2.91 -0.02 2.88 16 19 C -0.05 -2.89 5.50 84.86 0.47 -2.43 16 20 N -0.95 -53.79 13.07 21.65 0.28 -53.51 16 21 Si 0.93 46.11 29.55 68.60 2.03 48.14 16 22 H -0.28 -13.95 7.11 99.48 0.71 -13.25 16 23 H -0.30 -14.84 7.11 99.48 0.71 -14.13 16 24 H -0.30 -14.83 7.11 99.48 0.71 -14.13 16 25 C -0.12 -3.92 4.56 30.60 0.14 -3.78 16 26 C -0.11 -3.38 5.77 30.60 0.18 -3.20 16 27 C -0.11 -2.80 5.92 30.60 0.18 -2.61 16 28 C -0.11 -3.03 5.75 30.58 0.18 -2.86 16 29 C -0.11 -3.02 4.65 30.58 0.14 -2.88 16 30 H 0.04 0.78 7.87 -2.39 -0.02 0.76 16 31 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.06 0.86 8.09 -2.38 -0.02 0.84 16 33 H 0.07 1.72 7.87 -2.39 -0.02 1.70 16 34 H 0.06 2.34 5.51 -2.39 -0.01 2.33 16 35 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 36 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.03 1.10 7.22 -2.39 -0.02 1.08 16 38 H 0.06 1.98 8.14 -2.39 -0.02 1.97 16 39 H 0.07 2.01 7.57 -2.39 -0.02 2.00 16 40 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 41 H 0.40 13.71 6.70 -92.71 -0.62 13.09 16 42 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 43 H 0.03 1.14 7.58 -2.39 -0.02 1.12 16 44 H 0.38 17.58 6.53 -92.71 -0.61 16.97 16 45 H 0.25 13.79 8.31 -92.71 -0.77 13.02 16 46 H 0.07 2.02 8.14 -2.38 -0.02 2.00 16 47 H 0.03 1.35 7.16 -2.39 -0.02 1.34 16 48 H 0.04 1.71 7.61 -2.39 -0.02 1.69 16 49 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 50 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 51 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 52 H 0.04 1.50 6.86 -2.39 -0.02 1.49 16 53 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 54 H 0.06 1.70 7.12 -2.38 -0.02 1.68 16 55 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 Total: -1.00 -65.20 406.18 2.33 -62.87 By element: Atomic # 1 Polarization: 46.50 SS G_CDS: -0.36 Total: 46.14 kcal Atomic # 6 Polarization: -12.23 SS G_CDS: 4.81 Total: -7.42 kcal Atomic # 7 Polarization: -109.27 SS G_CDS: -3.12 Total: -112.39 kcal Atomic # 8 Polarization: -36.32 SS G_CDS: -1.03 Total: -37.35 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 2.03 Total: 48.14 kcal Total: -65.20 2.33 -62.87 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120226531.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.580 kcal (2) G-P(sol) polarization free energy of solvation -65.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds