Wall clock time and date at job start Tue Mar 31 2020 22:45:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42903 * 113.99671 * 2 1 4 4 C 1.53000 * 109.46622 * 179.97438 * 3 2 1 5 5 C 1.53001 * 109.46882 * 180.02562 * 4 3 2 6 6 C 1.52996 * 109.47391 * 180.02562 * 5 4 3 7 7 C 1.50706 * 109.47410 * 179.97438 * 6 5 4 8 8 O 1.21279 * 119.99840 * 0.02562 * 7 6 5 9 9 N 1.34770 * 119.99830 * 179.97438 * 7 6 5 10 10 C 1.46926 * 120.63240 * 359.72535 * 9 7 6 11 11 C 1.52770 * 109.00615 * 233.58208 * 10 9 7 12 12 C 1.53038 * 109.38251 * 305.58669 * 11 10 9 13 13 C 1.53037 * 109.53777 * 61.24049 * 12 11 10 14 14 H 1.09001 * 109.49692 * 58.58564 * 13 12 11 15 15 C 1.53009 * 109.49806 * 178.68217 * 13 12 11 16 16 H 1.08997 * 109.87261 * 182.06932 * 15 13 12 17 17 C 1.54321 * 109.87793 * 61.05110 * 15 13 12 18 18 C 1.55156 * 102.93939 * 218.38858 * 17 15 13 19 19 C 1.54913 * 101.58129 * 35.50451 * 18 17 15 20 20 N 1.47021 * 109.87948 * 303.08315 * 15 13 12 21 21 C 1.36933 * 125.64663 * 298.31165 * 20 15 13 22 22 H 1.07999 * 120.00778 * 345.93009 * 21 20 15 23 23 C 1.38819 * 119.99639 * 165.93485 * 21 20 15 24 24 N 1.31610 * 120.00055 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 119.99887 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.47095 * 359.97438 * 25 23 21 27 27 H 1.48500 * 109.47507 * 119.99745 * 25 23 21 28 28 H 1.48501 * 109.47245 * 240.00281 * 25 23 21 29 29 C 1.46925 * 120.62976 * 179.97438 * 9 7 6 30 30 H 1.08997 * 109.47051 * 299.99584 * 1 2 3 31 31 H 1.09000 * 109.47048 * 59.99634 * 1 2 3 32 32 H 1.09001 * 109.47088 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.46842 * 60.00539 * 3 2 1 34 34 H 1.08995 * 109.47636 * 300.00240 * 3 2 1 35 35 H 1.09001 * 109.47071 * 60.00681 * 4 3 2 36 36 H 1.08997 * 109.47185 * 299.99908 * 4 3 2 37 37 H 1.09005 * 109.47462 * 300.00224 * 5 4 3 38 38 H 1.08999 * 109.47218 * 59.99953 * 5 4 3 39 39 H 1.08995 * 109.47046 * 300.00387 * 6 5 4 40 40 H 1.09001 * 109.46829 * 60.00316 * 6 5 4 41 41 H 1.08999 * 109.58767 * 353.41194 * 10 9 7 42 42 H 1.09006 * 109.59022 * 113.84450 * 10 9 7 43 43 H 1.09002 * 109.56370 * 185.55075 * 11 10 9 44 44 H 1.08996 * 109.35619 * 65.50012 * 11 10 9 45 45 H 1.08999 * 109.46151 * 301.22223 * 12 11 10 46 46 H 1.09003 * 109.44671 * 181.25833 * 12 11 10 47 47 H 1.08991 * 110.72480 * 336.75074 * 17 15 13 48 48 H 1.09000 * 110.72087 * 100.03478 * 17 15 13 49 49 H 1.09001 * 111.00716 * 153.57394 * 18 17 15 50 50 H 1.09006 * 111.00844 * 277.43340 * 18 17 15 51 51 H 1.08998 * 110.36951 * 81.83016 * 19 18 17 52 52 H 1.09004 * 110.37077 * 204.15555 * 19 18 17 53 53 H 0.97009 * 120.00202 * 180.02562 * 24 23 21 54 54 H 1.08997 * 109.59222 * 246.15994 * 29 9 7 55 55 H 1.09000 * 109.58594 * 6.58627 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 6 4.1578 2.5824 0.0013 6 6 5.6829 2.4617 0.0013 7 6 6.2959 3.8385 0.0013 8 8 5.5830 4.8196 0.0018 9 7 7.6362 3.9793 0.0018 10 6 8.5129 2.8003 0.0084 11 6 9.4968 2.9184 1.1711 12 6 10.2389 4.2533 1.0748 13 6 9.2354 5.4048 1.1701 14 1 8.6913 5.3361 2.1121 15 6 9.9816 6.7391 1.1067 16 1 9.2762 7.5634 1.2109 17 6 10.7323 6.8572 -0.2365 18 6 12.0622 7.5464 0.1682 19 6 12.3231 6.9242 1.5627 20 7 10.9858 6.8017 2.1787 21 6 10.7233 6.7544 3.5218 22 1 9.7138 6.8922 3.8801 23 6 11.7549 6.5294 4.4231 24 7 12.9850 6.3610 3.9866 25 14 11.3970 6.4655 6.2554 26 1 9.9460 6.6837 6.4842 27 1 11.7886 5.1367 6.7903 28 1 12.1717 7.5260 6.9483 29 6 8.2486 5.3149 0.0013 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6886 1.8463 0.8901 34 1 1.6886 1.8465 -0.8899 35 1 3.8574 0.6437 -0.8892 36 1 3.8567 0.6439 0.8908 37 1 3.8365 3.1236 -0.8887 38 1 3.8357 3.1231 0.8913 39 1 6.0045 1.9204 0.8910 40 1 6.0046 1.9212 -0.8890 41 1 7.9121 1.8989 0.1302 42 1 9.0650 2.7500 -0.9301 43 1 10.2144 2.0991 1.1266 44 1 8.9502 2.8731 2.1130 45 1 10.7652 4.3083 0.1218 46 1 10.9572 4.3290 1.8912 47 1 10.9223 5.8711 -0.6601 48 1 10.1739 7.4781 -0.9370 49 1 12.8614 7.2929 -0.5283 50 1 11.9364 8.6268 0.2398 51 1 12.7859 5.9427 1.4597 52 1 12.9552 7.5819 2.1594 53 1 13.7058 6.2033 4.6164 54 1 8.7786 5.4735 -0.9379 55 1 7.4735 6.0723 0.1182 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001120337511.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:45:21 Heat of formation + Delta-G solvation = -95.857163 kcal Electronic energy + Delta-G solvation = -30600.084549 eV Core-core repulsion = 26636.110185 eV Total energy + Delta-G solvation = -3963.974364 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.38669 -39.85857 -38.92464 -37.75895 -35.72912 -34.68681 -33.71423 -32.54375 -31.26401 -30.82020 -28.26953 -27.49408 -26.50157 -26.28270 -24.64787 -23.73879 -22.60483 -22.13148 -21.80317 -20.23031 -19.56925 -18.61819 -18.00585 -17.33261 -17.25216 -17.00030 -16.68958 -16.58117 -16.26304 -15.86483 -15.70110 -15.54464 -15.26791 -15.04453 -14.52300 -14.24271 -14.10987 -13.80159 -13.64461 -13.55061 -13.48599 -13.18717 -13.15369 -12.88831 -12.77240 -12.62274 -12.47887 -12.37882 -12.29908 -12.00196 -11.93833 -11.89067 -11.80450 -11.68881 -11.58820 -11.53171 -11.45887 -11.23352 -10.92801 -10.73083 -10.63398 -10.62228 -9.56453 -8.74404 -7.84718 -5.18537 1.41370 1.42736 1.51966 1.66583 2.06459 2.48507 2.82307 3.33655 3.58305 3.67292 3.82834 3.94545 3.97791 3.98109 4.13305 4.14159 4.27855 4.30286 4.32896 4.35258 4.36066 4.41194 4.47078 4.52643 4.54506 4.55618 4.62595 4.73550 4.76872 4.78218 4.81805 4.85300 4.85992 4.89138 4.91407 4.96444 5.00341 5.09505 5.22567 5.22916 5.29587 5.33515 5.39169 5.48611 5.49781 5.58173 5.61844 5.70179 5.73008 5.83307 6.22208 6.27747 6.50424 7.14266 7.21925 7.82648 8.50468 9.26186 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.014846 B = 0.002335 C = 0.002152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1885.547038 B =11987.182452 C =13008.249566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.416 6.416 3 C 0.056 3.944 4 C -0.110 4.110 5 C -0.096 4.096 6 C -0.130 4.130 7 C 0.504 3.496 8 O -0.593 6.593 9 N -0.610 5.610 10 C 0.110 3.890 11 C -0.131 4.131 12 C -0.097 4.097 13 C -0.091 4.091 14 H 0.028 0.972 15 C 0.157 3.843 16 H 0.017 0.983 17 C -0.114 4.114 18 C -0.137 4.137 19 C 0.180 3.820 20 N -0.606 5.606 21 C -0.224 4.224 22 H 0.063 0.937 23 C -0.057 4.057 24 N -0.942 5.942 25 Si 0.963 3.037 26 H -0.275 1.275 27 H -0.291 1.291 28 H -0.293 1.293 29 C 0.125 3.875 30 H 0.046 0.954 31 H 0.049 0.951 32 H 0.097 0.903 33 H 0.048 0.952 34 H 0.054 0.946 35 H 0.082 0.918 36 H 0.074 0.926 37 H 0.063 0.937 38 H 0.053 0.947 39 H 0.111 0.889 40 H 0.125 0.875 41 H 0.115 0.885 42 H 0.091 0.909 43 H 0.091 0.909 44 H 0.045 0.955 45 H 0.070 0.930 46 H 0.036 0.964 47 H 0.084 0.916 48 H 0.086 0.914 49 H 0.084 0.916 50 H 0.058 0.942 51 H 0.002 0.998 52 H 0.028 0.972 53 H 0.246 0.754 54 H 0.087 0.913 55 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.714 -13.345 -14.210 25.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.336 6.336 3 C -0.021 4.021 4 C -0.147 4.147 5 C -0.134 4.134 6 C -0.170 4.170 7 C 0.294 3.706 8 O -0.474 6.474 9 N -0.342 5.342 10 C -0.011 4.011 11 C -0.169 4.169 12 C -0.134 4.134 13 C -0.113 4.113 14 H 0.047 0.953 15 C 0.050 3.950 16 H 0.035 0.965 17 C -0.152 4.152 18 C -0.176 4.176 19 C 0.055 3.945 20 N -0.330 5.330 21 C -0.354 4.354 22 H 0.081 0.919 23 C -0.251 4.251 24 N -0.591 5.591 25 Si 0.793 3.207 26 H -0.199 1.199 27 H -0.218 1.218 28 H -0.220 1.220 29 C 0.002 3.998 30 H 0.064 0.936 31 H 0.067 0.933 32 H 0.116 0.884 33 H 0.067 0.933 34 H 0.073 0.927 35 H 0.100 0.900 36 H 0.093 0.907 37 H 0.081 0.919 38 H 0.071 0.929 39 H 0.129 0.871 40 H 0.143 0.857 41 H 0.133 0.867 42 H 0.109 0.891 43 H 0.109 0.891 44 H 0.064 0.936 45 H 0.088 0.912 46 H 0.055 0.945 47 H 0.102 0.898 48 H 0.104 0.896 49 H 0.103 0.897 50 H 0.076 0.924 51 H 0.020 0.980 52 H 0.047 0.953 53 H 0.055 0.945 54 H 0.105 0.895 55 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -15.866 -13.022 -14.018 24.855 hybrid contribution 0.021 0.725 1.854 1.991 sum -15.845 -12.297 -12.164 23.457 Atomic orbital electron populations 1.22916 0.79732 1.03797 1.00700 1.87819 1.21306 1.28886 1.95596 1.22625 0.94590 0.84224 1.00620 1.21440 0.92644 0.96634 1.03998 1.21150 0.93300 0.96378 1.02575 1.21724 0.96108 0.92542 1.06597 1.21465 0.81620 0.92797 0.74690 1.90660 1.61517 1.42828 1.52445 1.48318 1.05788 1.07951 1.72167 1.21917 0.92528 0.87531 0.99164 1.21835 0.98719 0.97850 0.98511 1.21327 0.97116 0.93594 1.01398 1.21709 0.95840 0.97169 0.96545 0.95334 1.21087 0.90942 0.93743 0.89253 0.96530 1.22646 0.95820 1.01467 0.95265 1.22892 0.98079 0.99377 0.97233 1.21246 0.86788 0.96090 0.90399 1.44719 1.02481 1.85242 1.00600 1.19134 0.93672 1.40255 0.82303 0.91914 1.25497 0.95815 1.02314 1.01471 1.70120 0.99405 1.56401 1.33163 0.85234 0.77349 0.76842 0.81305 1.19945 1.21771 1.21978 1.21532 0.95369 0.84465 0.98438 0.93558 0.93254 0.88440 0.93326 0.92728 0.89968 0.90740 0.91860 0.92864 0.87069 0.85725 0.86694 0.89062 0.89076 0.93616 0.91187 0.94522 0.89788 0.89555 0.89705 0.92352 0.98040 0.95310 0.94486 0.89493 0.91756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 11.01 113.37 1.25 1.54 16 2 O -0.42 -7.41 10.70 -148.98 -1.59 -9.00 16 3 C 0.06 0.86 5.94 71.98 0.43 1.29 16 4 C -0.11 -1.53 5.58 30.59 0.17 -1.36 16 5 C -0.10 -1.65 4.50 30.59 0.14 -1.51 16 6 C -0.13 -2.08 4.05 29.85 0.12 -1.96 16 7 C 0.50 13.16 7.70 87.66 0.67 13.84 16 8 O -0.59 -20.84 15.39 -3.03 -0.05 -20.88 16 9 N -0.61 -15.28 2.98 -819.64 -2.44 -17.72 16 10 C 0.11 1.98 6.31 86.22 0.54 2.53 16 11 C -0.13 -3.26 6.06 30.53 0.19 -3.07 16 12 C -0.10 -3.24 4.75 30.62 0.15 -3.09 16 13 C -0.09 -3.29 2.10 -10.70 -0.02 -3.31 16 14 H 0.03 1.23 8.07 -2.39 -0.02 1.22 16 15 C 0.16 6.28 2.96 45.34 0.13 6.41 16 16 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 17 C -0.11 -3.59 5.09 31.78 0.16 -3.43 16 18 C -0.14 -4.86 7.08 31.99 0.23 -4.64 16 19 C 0.18 8.61 5.44 86.79 0.47 9.09 16 20 N -0.61 -30.31 2.24 -667.43 -1.50 -31.81 16 21 C -0.22 -12.58 9.87 84.04 0.83 -11.75 16 22 H 0.06 3.56 7.83 -2.91 -0.02 3.54 16 23 C -0.06 -3.27 5.47 84.87 0.46 -2.81 16 24 N -0.94 -56.02 10.58 21.65 0.23 -55.79 16 25 Si 0.96 46.63 29.55 68.60 2.03 48.66 16 26 H -0.27 -12.88 7.11 99.48 0.71 -12.17 16 27 H -0.29 -13.96 7.11 99.48 0.71 -13.26 16 28 H -0.29 -14.14 7.11 99.48 0.71 -13.43 16 29 C 0.13 3.71 5.55 86.38 0.48 4.19 16 30 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 32 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.06 1.20 8.10 -2.38 -0.02 1.18 16 38 H 0.05 1.12 8.10 -2.39 -0.02 1.10 16 39 H 0.11 1.45 7.68 -2.39 -0.02 1.43 16 40 H 0.12 1.25 7.95 -2.39 -0.02 1.23 16 41 H 0.12 1.31 5.93 -2.39 -0.01 1.30 16 42 H 0.09 1.31 8.14 -2.38 -0.02 1.29 16 43 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 44 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 45 H 0.07 2.09 6.18 -2.39 -0.01 2.07 16 46 H 0.04 1.62 7.50 -2.39 -0.02 1.60 16 47 H 0.08 2.36 5.52 -2.39 -0.01 2.35 16 48 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 49 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 50 H 0.06 2.05 8.14 -2.38 -0.02 2.03 16 51 H 0.00 0.08 8.08 -2.39 -0.02 0.06 16 52 H 0.03 1.58 6.90 -2.38 -0.02 1.57 16 53 H 0.25 14.26 8.31 -92.70 -0.77 13.49 16 54 H 0.09 2.20 6.83 -2.39 -0.02 2.19 16 55 H 0.06 2.20 7.00 -2.39 -0.02 2.18 16 Total: -1.00 -73.70 416.24 3.91 -69.79 By element: Atomic # 1 Polarization: 13.98 SS G_CDS: 0.83 Total: 14.81 kcal Atomic # 6 Polarization: -4.45 SS G_CDS: 6.40 Total: 1.95 kcal Atomic # 7 Polarization: -101.61 SS G_CDS: -3.71 Total: -105.32 kcal Atomic # 8 Polarization: -28.24 SS G_CDS: -1.64 Total: -29.88 kcal Atomic # 14 Polarization: 46.63 SS G_CDS: 2.03 Total: 48.66 kcal Total: -73.70 3.91 -69.79 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120337511.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.067 kcal (2) G-P(sol) polarization free energy of solvation -73.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds