Wall clock time and date at job start Tue Mar 31 2020 22:45:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42903 * 113.99927 * 2 1 4 4 C 1.52998 * 109.47071 * 179.97438 * 3 2 1 5 5 C 1.53002 * 109.47083 * 179.97438 * 4 3 2 6 6 C 1.53001 * 109.47028 * 180.02562 * 5 4 3 7 7 C 1.50703 * 109.46934 * 180.02562 * 6 5 4 8 8 O 1.21281 * 119.99982 * 359.97438 * 7 6 5 9 9 N 1.34774 * 119.99788 * 180.02562 * 7 6 5 10 10 C 1.46928 * 120.63306 * 359.71422 * 9 7 6 11 11 C 1.53616 * 108.54530 * 126.37161 * 10 9 7 12 12 C 1.53045 * 109.24041 * 54.85840 * 11 10 9 13 13 C 1.53039 * 109.53792 * 298.50996 * 12 11 10 14 14 H 1.09001 * 109.52870 * 301.40149 * 13 12 11 15 15 C 1.52997 * 109.49884 * 181.31518 * 13 12 11 16 16 H 1.08999 * 109.87157 * 63.01620 * 15 13 12 17 17 C 1.54327 * 109.88438 * 301.99990 * 15 13 12 18 18 C 1.55160 * 102.94168 * 218.39052 * 17 15 13 19 19 C 1.54911 * 101.58309 * 35.49920 * 18 17 15 20 20 N 1.47022 * 109.88314 * 184.18953 * 15 13 12 21 21 C 1.36936 * 125.64984 * 298.33455 * 20 15 13 22 22 H 1.08000 * 120.00184 * 345.73050 * 21 20 15 23 23 C 1.38814 * 120.00054 * 165.71846 * 21 20 15 24 24 N 1.31621 * 119.99959 * 0.02562 * 23 21 20 25 25 Si 1.86802 * 120.00014 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.46789 * 90.00366 * 25 23 21 27 27 H 1.48495 * 109.46947 * 210.00518 * 25 23 21 28 28 H 1.48497 * 109.47176 * 330.00463 * 25 23 21 29 29 C 1.46922 * 120.63176 * 180.02562 * 9 7 6 30 30 H 1.09000 * 109.47435 * 300.00188 * 1 2 3 31 31 H 1.09004 * 109.46983 * 59.99943 * 1 2 3 32 32 H 1.08999 * 109.46897 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.46846 * 59.99712 * 3 2 1 34 34 H 1.08999 * 109.47131 * 300.00088 * 3 2 1 35 35 H 1.09003 * 109.47069 * 60.00402 * 4 3 2 36 36 H 1.08999 * 109.47667 * 300.00313 * 4 3 2 37 37 H 1.08993 * 109.46958 * 60.00215 * 5 4 3 38 38 H 1.09005 * 109.47054 * 300.00232 * 5 4 3 39 39 H 1.09003 * 109.47396 * 60.00291 * 6 5 4 40 40 H 1.08999 * 109.47394 * 300.00169 * 6 5 4 41 41 H 1.09004 * 109.58759 * 246.20770 * 10 9 7 42 42 H 1.09001 * 109.58443 * 6.62780 * 10 9 7 43 43 H 1.08998 * 109.63534 * 294.86825 * 11 10 9 44 44 H 1.08998 * 109.46362 * 174.74029 * 11 10 9 45 45 H 1.09006 * 109.46062 * 178.49213 * 12 11 10 46 46 H 1.08994 * 109.44951 * 58.52855 * 12 11 10 47 47 H 1.08997 * 110.71754 * 336.74877 * 17 15 13 48 48 H 1.08997 * 110.72038 * 100.02625 * 17 15 13 49 49 H 1.08996 * 111.00414 * 153.57559 * 18 17 15 50 50 H 1.09000 * 111.00194 * 277.42404 * 18 17 15 51 51 H 1.08992 * 110.36616 * 81.83028 * 19 18 17 52 52 H 1.08999 * 110.36478 * 204.04640 * 19 18 17 53 53 H 0.97001 * 119.99743 * 179.97438 * 24 23 21 54 54 H 1.09004 * 109.58758 * 353.36819 * 29 9 7 55 55 H 1.09001 * 109.58880 * 113.64838 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 6 4.1577 2.5824 0.0000 6 6 5.6829 2.4616 0.0000 7 6 6.2959 3.8384 0.0000 8 8 5.5830 4.8195 -0.0005 9 7 7.6362 3.9792 -0.0005 10 6 8.5129 2.8002 0.0052 11 6 9.4977 2.9178 -1.1679 12 6 10.2398 4.2529 -1.0715 13 6 9.2364 5.4043 -1.1681 14 1 8.6928 5.3360 -2.1104 15 6 9.9825 6.7386 -1.1045 16 1 10.6506 6.8306 -1.9608 17 6 10.7935 6.8245 0.2056 18 6 10.6285 8.3107 0.6196 19 6 9.1771 8.6016 0.1627 20 7 9.0199 7.8498 -1.0957 21 6 8.1257 8.1390 -2.0917 22 1 8.2351 7.6835 -3.0647 23 6 7.0783 9.0176 -1.8505 24 7 6.9450 9.5730 -0.6647 25 14 5.8581 9.4116 -3.2089 26 1 4.7315 8.4455 -3.1577 27 1 5.3375 10.7897 -3.0222 28 1 6.5354 9.3127 -4.5267 29 6 8.2486 5.3148 0.0000 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6885 1.8464 0.8900 34 1 1.6886 1.8464 -0.8900 35 1 3.8574 0.6437 -0.8892 36 1 3.8568 0.6439 0.8908 37 1 3.8358 3.1238 0.8895 38 1 3.8364 3.1228 -0.8905 39 1 6.0046 1.9203 -0.8898 40 1 6.0046 1.9211 0.8902 41 1 9.0633 2.7586 0.9452 42 1 7.9123 1.8978 -0.1091 43 1 8.9518 2.8723 -2.1103 44 1 10.2153 2.0987 -1.1232 45 1 10.9588 4.3284 -1.8873 46 1 10.7652 4.3080 -0.1182 47 1 10.3726 6.1641 0.9637 48 1 11.8423 6.5884 0.0261 49 1 10.7296 8.4294 1.6984 50 1 11.3393 8.9450 0.0900 51 1 8.4662 8.2460 0.9084 52 1 9.0410 9.6689 -0.0116 53 1 6.2134 10.1872 -0.4963 54 1 7.4736 6.0722 -0.1177 55 1 8.7758 5.4747 0.9406 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001120337512.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:45:25 Heat of formation + Delta-G solvation = -96.874438 kcal Electronic energy + Delta-G solvation = -31158.540189 eV Core-core repulsion = 27194.521713 eV Total energy + Delta-G solvation = -3964.018476 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.35946 -39.82046 -38.94799 -37.77511 -35.75666 -34.73780 -33.80348 -32.28462 -31.20444 -30.88498 -28.37572 -27.46742 -26.49154 -26.31829 -24.60554 -23.88412 -22.44408 -22.16274 -21.73137 -20.29811 -19.55380 -18.66998 -18.00323 -17.36829 -17.28143 -17.13249 -16.74988 -16.54266 -16.15675 -15.77030 -15.75154 -15.49732 -15.26497 -15.02490 -14.40200 -14.23935 -14.10291 -13.94110 -13.70401 -13.54446 -13.46420 -13.10339 -12.99740 -12.87913 -12.80359 -12.72207 -12.61196 -12.44479 -12.31997 -12.07833 -11.98564 -11.89337 -11.79350 -11.69886 -11.63581 -11.52046 -11.34058 -11.13511 -11.09098 -10.72765 -10.65578 -10.63219 -9.49740 -8.74766 -7.86490 -5.19541 1.34965 1.40539 1.45540 1.70896 2.10926 2.46764 2.78925 3.33746 3.60291 3.67753 3.88061 3.92251 3.95246 3.97989 4.14706 4.16294 4.22256 4.26864 4.30004 4.31276 4.35892 4.39111 4.44336 4.50015 4.52324 4.57245 4.67228 4.71670 4.78133 4.78660 4.81858 4.83924 4.88701 4.94740 4.96593 5.02060 5.07701 5.08853 5.22613 5.23139 5.25231 5.34423 5.35595 5.40864 5.47839 5.60261 5.63040 5.68126 5.70995 5.81378 6.17881 6.26908 6.56688 7.12941 7.31014 7.83204 8.49019 9.24721 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.010180 B = 0.003174 C = 0.002602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2749.790927 B = 8818.350997 C =10756.949958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.412 6.412 3 C 0.055 3.945 4 C -0.104 4.104 5 C -0.100 4.100 6 C -0.122 4.122 7 C 0.490 3.510 8 O -0.600 6.600 9 N -0.614 5.614 10 C 0.099 3.901 11 C -0.129 4.129 12 C -0.108 4.108 13 C -0.094 4.094 14 H 0.029 0.971 15 C 0.156 3.844 16 H 0.034 0.966 17 C -0.111 4.111 18 C -0.137 4.137 19 C 0.179 3.821 20 N -0.610 5.610 21 C -0.223 4.223 22 H 0.068 0.932 23 C -0.060 4.060 24 N -0.943 5.943 25 Si 0.960 3.040 26 H -0.301 1.301 27 H -0.290 1.290 28 H -0.265 1.265 29 C 0.139 3.861 30 H 0.047 0.953 31 H 0.045 0.955 32 H 0.101 0.899 33 H 0.050 0.950 34 H 0.046 0.954 35 H 0.081 0.919 36 H 0.085 0.915 37 H 0.053 0.947 38 H 0.046 0.954 39 H 0.119 0.881 40 H 0.126 0.874 41 H 0.087 0.913 42 H 0.114 0.886 43 H 0.052 0.948 44 H 0.111 0.889 45 H 0.071 0.929 46 H 0.082 0.918 47 H 0.075 0.925 48 H 0.097 0.903 49 H 0.080 0.920 50 H 0.065 0.935 51 H -0.014 1.014 52 H 0.028 0.972 53 H 0.242 0.758 54 H 0.039 0.961 55 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.738 -23.209 3.854 23.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.332 6.332 3 C -0.021 4.021 4 C -0.141 4.141 5 C -0.138 4.138 6 C -0.161 4.161 7 C 0.280 3.720 8 O -0.481 6.481 9 N -0.346 5.346 10 C -0.022 4.022 11 C -0.167 4.167 12 C -0.146 4.146 13 C -0.115 4.115 14 H 0.048 0.952 15 C 0.049 3.951 16 H 0.052 0.948 17 C -0.149 4.149 18 C -0.176 4.176 19 C 0.053 3.947 20 N -0.334 5.334 21 C -0.353 4.353 22 H 0.086 0.914 23 C -0.254 4.254 24 N -0.592 5.592 25 Si 0.790 3.210 26 H -0.229 1.229 27 H -0.216 1.216 28 H -0.189 1.189 29 C 0.016 3.984 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.119 0.881 33 H 0.068 0.932 34 H 0.064 0.936 35 H 0.099 0.901 36 H 0.104 0.896 37 H 0.072 0.928 38 H 0.065 0.935 39 H 0.137 0.863 40 H 0.144 0.856 41 H 0.106 0.894 42 H 0.132 0.868 43 H 0.070 0.930 44 H 0.129 0.871 45 H 0.090 0.910 46 H 0.100 0.900 47 H 0.093 0.907 48 H 0.116 0.884 49 H 0.099 0.901 50 H 0.083 0.917 51 H 0.004 0.996 52 H 0.047 0.953 53 H 0.052 0.948 54 H 0.058 0.942 55 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.323 -22.727 3.807 23.161 hybrid contribution -1.690 1.612 -0.820 2.475 sum 0.633 -21.115 2.987 21.334 Atomic orbital electron populations 1.22927 0.79755 1.03908 1.00602 1.87805 1.21268 1.28517 1.95575 1.22608 0.94803 0.84324 1.00395 1.21398 0.92389 0.96006 1.04349 1.21173 0.93900 0.96738 1.02011 1.21684 0.95638 0.91940 1.06818 1.21751 0.82186 0.92891 0.75128 1.90764 1.61938 1.43437 1.51960 1.48422 1.05761 1.08188 1.72252 1.22236 0.92905 0.87067 0.99985 1.21992 0.98670 0.98180 0.97828 1.21587 0.96899 0.92862 1.03285 1.21754 0.96512 0.96921 0.96334 0.95248 1.21225 0.90369 0.86528 0.96989 0.94795 1.22631 1.00345 0.95991 0.95910 1.22890 0.96655 0.97254 1.00759 1.21156 0.91910 0.95231 0.86365 1.44701 1.40640 1.29879 1.18226 1.19099 1.03104 1.21936 0.91160 0.91434 1.25538 0.99777 1.01486 0.98565 1.70126 1.32665 1.34345 1.22064 0.85344 0.79505 0.76499 0.79692 1.22903 1.21639 1.18928 1.21231 0.95775 0.83531 0.97840 0.93467 0.93670 0.88071 0.93175 0.93556 0.90084 0.89639 0.92804 0.93495 0.86266 0.85564 0.89436 0.86829 0.92957 0.87107 0.90984 0.89954 0.90703 0.88407 0.90130 0.91673 0.99581 0.95344 0.94824 0.94198 0.91980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 11.01 113.37 1.25 1.60 16 2 O -0.41 -8.43 10.70 -148.98 -1.59 -10.02 16 3 C 0.06 1.09 5.94 71.98 0.43 1.51 16 4 C -0.10 -1.84 5.58 30.59 0.17 -1.67 16 5 C -0.10 -2.37 4.50 30.60 0.14 -2.23 16 6 C -0.12 -2.57 4.05 29.85 0.12 -2.45 16 7 C 0.49 17.13 7.70 87.66 0.67 17.80 16 8 O -0.60 -29.50 15.40 -3.03 -0.05 -29.55 16 9 N -0.61 -19.21 2.97 -817.99 -2.43 -21.64 16 10 C 0.10 1.78 6.37 86.51 0.55 2.33 16 11 C -0.13 -2.24 6.10 30.82 0.19 -2.06 16 12 C -0.11 -2.48 4.87 30.62 0.15 -2.33 16 13 C -0.09 -3.36 2.10 -10.70 -0.02 -3.38 16 14 H 0.03 1.26 8.09 -2.39 -0.02 1.24 16 15 C 0.16 6.15 2.98 45.34 0.14 6.28 16 16 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 17 C -0.11 -3.46 5.18 31.78 0.16 -3.29 16 18 C -0.14 -5.00 7.09 31.99 0.23 -4.78 16 19 C 0.18 9.12 5.42 86.86 0.47 9.59 16 20 N -0.61 -31.81 2.34 -668.26 -1.56 -33.38 16 21 C -0.22 -13.18 9.89 84.03 0.83 -12.34 16 22 H 0.07 3.92 7.83 -2.91 -0.02 3.90 16 23 C -0.06 -3.69 5.47 84.86 0.46 -3.22 16 24 N -0.94 -60.85 10.56 21.65 0.23 -60.62 16 25 Si 0.96 50.24 29.55 68.60 2.03 52.27 16 26 H -0.30 -16.26 7.11 99.48 0.71 -15.55 16 27 H -0.29 -14.97 7.11 99.48 0.71 -14.27 16 28 H -0.26 -12.90 7.11 99.48 0.71 -12.20 16 29 C 0.14 5.52 5.26 86.38 0.45 5.98 16 30 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.04 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 37 H 0.05 1.46 8.10 -2.39 -0.02 1.44 16 38 H 0.05 1.34 8.10 -2.38 -0.02 1.32 16 39 H 0.12 1.88 7.70 -2.39 -0.02 1.87 16 40 H 0.13 1.80 7.93 -2.39 -0.02 1.78 16 41 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 42 H 0.11 1.29 5.93 -2.39 -0.01 1.28 16 43 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 44 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 45 H 0.07 1.53 8.14 -2.38 -0.02 1.51 16 46 H 0.08 1.60 6.97 -2.39 -0.02 1.59 16 47 H 0.07 2.19 5.44 -2.39 -0.01 2.18 16 48 H 0.10 2.32 8.14 -2.39 -0.02 2.30 16 49 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 50 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 51 H -0.01 -0.79 8.07 -2.39 -0.02 -0.81 16 52 H 0.03 1.65 6.90 -2.39 -0.02 1.63 16 53 H 0.24 15.40 8.31 -92.71 -0.77 14.63 16 54 H 0.04 2.20 6.59 -2.38 -0.02 2.18 16 55 H 0.06 2.33 6.06 -2.39 -0.01 2.32 16 Total: -1.00 -84.93 416.49 3.85 -81.08 By element: Atomic # 1 Polarization: 13.70 SS G_CDS: 0.83 Total: 14.53 kcal Atomic # 6 Polarization: 0.94 SS G_CDS: 6.39 Total: 7.33 kcal Atomic # 7 Polarization: -111.87 SS G_CDS: -3.76 Total: -115.63 kcal Atomic # 8 Polarization: -37.93 SS G_CDS: -1.64 Total: -39.57 kcal Atomic # 14 Polarization: 50.24 SS G_CDS: 2.03 Total: 52.27 kcal Total: -84.93 3.85 -81.08 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120337512.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.794 kcal (2) G-P(sol) polarization free energy of solvation -84.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds