Wall clock time and date at job start Tue Mar 31 2020 22:02:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42907 * 109.46910 * 2 1 4 4 C 1.42898 * 113.99701 * 175.95189 * 3 2 1 5 5 H 1.09004 * 109.47355 * 29.79079 * 4 3 2 6 6 C 1.53004 * 109.46798 * 149.78869 * 4 3 2 7 7 C 1.50698 * 109.47269 * 294.99692 * 6 4 3 8 8 O 1.21287 * 119.99626 * 0.02562 * 7 6 4 9 9 N 1.34775 * 120.00382 * 180.02562 * 7 6 4 10 10 C 1.46498 * 120.00367 * 180.02562 * 9 7 6 11 11 C 1.53955 * 113.57595 * 252.71604 * 10 9 7 12 12 C 1.52904 * 86.78316 * 220.66219 * 11 10 9 13 13 C 1.52902 * 121.13922 * 150.61731 * 12 11 10 14 14 C 1.53947 * 86.78487 * 100.82093 * 13 12 11 15 15 N 1.46503 * 113.57966 * 139.33498 * 14 13 12 16 16 C 1.36937 * 119.99425 * 107.28615 * 15 14 13 17 17 H 1.07993 * 120.00423 * 359.97438 * 16 15 14 18 18 C 1.38817 * 119.99499 * 180.02562 * 16 15 14 19 19 N 1.31623 * 119.99944 * 179.97438 * 18 16 15 20 20 Si 1.86798 * 120.00334 * 359.97438 * 18 16 15 21 21 H 1.48492 * 109.47214 * 90.00069 * 20 18 16 22 22 H 1.48501 * 109.47159 * 210.00609 * 20 18 16 23 23 H 1.48510 * 109.46743 * 330.00223 * 20 18 16 24 24 C 1.52909 * 121.13946 * 259.18357 * 12 11 10 25 25 C 1.52908 * 88.04248 * 24.90004 * 12 11 10 26 26 C 1.52994 * 109.47254 * 269.78734 * 4 3 2 27 27 C 1.52998 * 109.47516 * 175.89490 * 26 4 3 28 28 C 1.53001 * 109.47412 * 295.89497 * 26 4 3 29 29 H 1.09001 * 109.47013 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47230 * 300.00162 * 1 2 3 31 31 H 1.09002 * 109.47442 * 60.00073 * 1 2 3 32 32 H 1.08998 * 109.46957 * 119.99855 * 2 1 3 33 33 H 1.09002 * 109.47074 * 240.00153 * 2 1 3 34 34 H 1.08996 * 109.47034 * 55.00098 * 6 4 3 35 35 H 1.09004 * 109.46861 * 174.99740 * 6 4 3 36 36 H 0.97008 * 119.99737 * 359.97438 * 9 7 6 37 37 H 1.08999 * 112.82584 * 23.90471 * 10 9 7 38 38 H 1.08994 * 113.66385 * 335.13893 * 11 10 9 39 39 H 1.09003 * 113.65805 * 106.19008 * 11 10 9 40 40 H 1.08995 * 113.66639 * 215.29656 * 13 12 11 41 41 H 1.09004 * 113.66085 * 346.35281 * 13 12 11 42 42 H 1.08994 * 113.58292 * 270.13279 * 14 13 12 43 43 H 0.96991 * 119.99950 * 287.28214 * 15 14 13 44 44 H 0.96999 * 120.00360 * 179.97438 * 19 18 16 45 45 H 1.09003 * 113.65861 * 13.64285 * 24 12 11 46 46 H 1.08990 * 113.66909 * 144.61172 * 24 12 11 47 47 H 1.09008 * 113.66252 * 220.63164 * 25 12 11 48 48 H 1.08993 * 113.75060 * 89.58387 * 25 12 11 49 49 H 1.09002 * 109.47457 * 55.89130 * 26 4 3 50 50 H 1.09000 * 109.47084 * 66.14383 * 27 26 4 51 51 H 1.08997 * 109.47611 * 186.14579 * 27 26 4 52 52 H 1.08998 * 109.46791 * 306.14478 * 27 26 4 53 53 H 1.09001 * 109.46911 * 59.99353 * 28 26 4 54 54 H 1.08999 * 109.47630 * 179.97438 * 28 26 4 55 55 H 1.09001 * 109.47419 * 300.00163 * 28 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.4278 1.4612 0.0922 5 1 3.8928 0.5894 -0.3681 6 6 3.8861 2.7271 -0.6348 7 6 3.5913 2.5957 -2.1068 8 8 3.0659 1.5888 -2.5325 9 7 3.9115 3.5969 -2.9503 10 6 3.6245 3.4694 -4.3812 11 6 4.8799 3.2446 -5.2435 12 6 4.2521 4.2045 -6.2546 13 6 5.1207 5.0691 -7.1689 14 6 4.8316 4.0377 -8.2745 15 7 4.5834 4.6394 -9.5870 16 6 5.5274 4.5424 -10.5742 17 1 6.4550 4.0226 -10.3852 18 6 5.2924 5.1130 -11.8177 19 7 6.1999 5.0202 -12.7665 20 14 3.6883 6.0127 -12.1444 21 1 3.8444 7.4467 -11.7921 22 1 3.3367 5.8915 -13.5821 23 1 2.6084 5.4148 -11.3187 24 6 3.5454 3.6833 -7.5064 25 6 3.4622 4.8212 -5.0997 26 6 3.8387 1.5412 1.5637 27 6 5.3651 1.5600 1.6668 28 6 3.2699 2.8192 2.1834 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 3.3540 3.5895 -0.2333 35 1 4.9580 2.8616 -0.4895 36 1 4.3314 4.4024 -2.6098 37 1 2.8190 2.7652 -4.5898 38 1 5.7956 3.6241 -4.7902 39 1 4.9799 2.2240 -5.6129 40 1 4.6997 6.0544 -7.3688 41 1 6.1681 5.1073 -6.8693 42 1 5.5556 3.2237 -8.3117 43 1 3.7504 5.1065 -9.7566 44 1 6.0356 5.4186 -13.6355 45 1 3.3343 2.6143 -7.4764 46 1 2.6806 4.2780 -7.8003 47 1 2.4295 5.0601 -5.3543 48 1 3.9780 5.6442 -4.6051 49 1 3.4491 0.6742 2.0974 50 1 5.7475 2.4818 1.2285 51 1 5.6592 1.5068 2.7150 52 1 5.7760 0.7048 1.1303 53 1 2.1825 2.8059 2.1100 54 1 3.5623 2.8760 3.2319 55 1 3.6594 3.6863 1.6499 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001121232967.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:02:47 Heat of formation + Delta-G solvation = -67.629655 kcal Electronic energy + Delta-G solvation = -29722.385137 eV Core-core repulsion = 25759.634809 eV Total energy + Delta-G solvation = -3962.750327 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.70208 -40.67597 -39.21310 -37.27824 -36.25328 -35.24440 -33.70398 -32.31772 -31.97158 -30.52709 -27.99647 -26.76483 -26.68218 -26.11320 -25.43064 -23.76267 -23.44657 -21.73377 -21.50680 -20.29604 -19.80764 -18.74851 -18.22796 -17.80586 -17.26117 -16.94161 -16.49770 -16.23026 -16.11499 -15.82995 -15.74782 -15.23007 -14.84092 -14.77306 -14.64973 -14.27830 -14.06042 -13.81291 -13.72207 -13.60773 -13.50483 -13.33155 -13.10594 -12.98806 -12.98511 -12.89309 -12.64219 -12.47611 -12.33965 -12.20970 -12.07803 -12.00927 -11.87142 -11.85371 -11.72263 -11.46911 -11.36965 -11.06382 -10.90525 -10.84629 -10.63330 -10.28661 -9.92098 -9.26558 -8.02699 -5.35383 1.37347 1.40938 1.48285 1.73959 2.28359 2.48244 2.79705 3.27141 3.45692 3.50792 3.65198 3.70065 3.77558 3.84351 3.89942 4.03839 4.08465 4.15681 4.20851 4.29522 4.31611 4.35912 4.45512 4.50551 4.52998 4.58216 4.59137 4.70811 4.80404 4.82593 4.85886 4.90522 4.93164 4.94262 4.96538 5.05659 5.06098 5.07870 5.08384 5.11101 5.16156 5.24277 5.26784 5.29782 5.46803 5.48081 5.49559 5.62786 5.67899 5.78337 6.22854 6.37421 6.67696 7.07796 7.38389 7.85502 8.05016 9.18940 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.023570 B = 0.001813 C = 0.001753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.669906 B =15441.497436 C =15966.043524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.061 3.939 3 O -0.390 6.390 4 C 0.108 3.892 5 H 0.049 0.951 6 C -0.137 4.137 7 C 0.509 3.491 8 O -0.580 6.580 9 N -0.710 5.710 10 C 0.130 3.870 11 C -0.121 4.121 12 C -0.092 4.092 13 C -0.137 4.137 14 C 0.149 3.851 15 N -0.743 5.743 16 C -0.233 4.233 17 H 0.055 0.945 18 C -0.068 4.068 19 N -0.985 5.985 20 Si 0.957 3.043 21 H -0.276 1.276 22 H -0.297 1.297 23 H -0.253 1.253 24 C -0.124 4.124 25 C -0.115 4.115 26 C -0.113 4.113 27 C -0.149 4.149 28 C -0.142 4.142 29 H 0.084 0.916 30 H 0.065 0.935 31 H 0.046 0.954 32 H 0.056 0.944 33 H 0.032 0.968 34 H 0.120 0.880 35 H 0.134 0.866 36 H 0.416 0.584 37 H 0.089 0.911 38 H 0.100 0.900 39 H 0.058 0.942 40 H 0.077 0.923 41 H 0.061 0.939 42 H 0.065 0.935 43 H 0.366 0.634 44 H 0.257 0.743 45 H 0.065 0.935 46 H 0.084 0.916 47 H 0.076 0.924 48 H 0.108 0.892 49 H 0.067 0.933 50 H 0.071 0.929 51 H 0.066 0.934 52 H 0.052 0.948 53 H 0.047 0.953 54 H 0.060 0.940 55 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.337 -3.917 37.096 38.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.016 4.016 3 O -0.309 6.309 4 C 0.050 3.950 5 H 0.067 0.933 6 C -0.176 4.176 7 C 0.297 3.703 8 O -0.460 6.460 9 N -0.361 5.361 10 C 0.025 3.975 11 C -0.160 4.160 12 C -0.093 4.093 13 C -0.178 4.178 14 C 0.040 3.960 15 N -0.384 5.384 16 C -0.364 4.364 17 H 0.073 0.927 18 C -0.259 4.259 19 N -0.635 5.635 20 Si 0.785 3.215 21 H -0.202 1.202 22 H -0.224 1.224 23 H -0.177 1.177 24 C -0.163 4.163 25 C -0.153 4.153 26 C -0.132 4.132 27 C -0.206 4.206 28 C -0.200 4.200 29 H 0.103 0.897 30 H 0.084 0.916 31 H 0.065 0.935 32 H 0.074 0.926 33 H 0.051 0.949 34 H 0.138 0.862 35 H 0.152 0.848 36 H 0.253 0.747 37 H 0.107 0.893 38 H 0.118 0.882 39 H 0.077 0.923 40 H 0.095 0.905 41 H 0.080 0.920 42 H 0.083 0.917 43 H 0.200 0.800 44 H 0.066 0.934 45 H 0.084 0.916 46 H 0.103 0.897 47 H 0.094 0.906 48 H 0.127 0.873 49 H 0.086 0.914 50 H 0.090 0.910 51 H 0.085 0.915 52 H 0.071 0.929 53 H 0.066 0.934 54 H 0.079 0.921 55 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -7.642 -4.546 36.674 37.736 hybrid contribution -0.260 0.349 -1.058 1.144 sum -7.902 -4.197 35.616 36.722 Atomic orbital electron populations 1.21713 0.93297 1.02953 1.02321 1.22452 0.95948 0.83697 0.99486 1.87849 1.21513 1.26865 1.94692 1.21885 0.81529 0.96928 0.94687 0.93260 1.22015 1.05328 1.00794 0.89507 1.21207 0.76855 0.82577 0.89681 1.90688 1.44203 1.31544 1.79523 1.45929 1.62629 1.20478 1.07102 1.22278 0.97513 0.98579 0.79175 1.23175 0.98422 0.98883 0.95524 1.21896 0.97688 0.97695 0.91992 1.23402 0.99207 0.98636 0.96532 1.21893 0.96577 0.94902 0.82652 1.42759 1.18772 1.66276 1.10622 1.19112 0.97385 1.28231 0.91689 0.92700 1.25551 1.01761 1.02665 0.95914 1.69893 1.36959 1.51996 1.04700 0.85370 0.80388 0.78936 0.76848 1.20229 1.22363 1.17721 1.23123 0.97548 1.00897 0.94695 1.23131 1.01072 0.96296 0.94776 1.21567 0.97162 0.99832 0.94604 1.21889 0.93390 1.02591 1.02727 1.21797 1.00742 0.96700 1.00712 0.89731 0.91555 0.93461 0.92590 0.94943 0.86246 0.84787 0.74659 0.89260 0.88161 0.92342 0.90481 0.92018 0.91658 0.80020 0.93391 0.91592 0.89749 0.90563 0.87331 0.91435 0.91000 0.91506 0.92899 0.93363 0.92065 0.91346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.26 10.28 71.98 0.74 -1.52 16 2 C 0.06 1.11 6.44 71.98 0.46 1.57 16 3 O -0.39 -7.90 8.72 -135.18 -1.18 -9.08 16 4 C 0.11 1.67 1.43 30.59 0.04 1.71 16 5 H 0.05 0.92 7.64 -2.38 -0.02 0.91 16 6 C -0.14 -1.66 4.63 29.85 0.14 -1.52 16 7 C 0.51 10.08 7.71 87.66 0.68 10.75 16 8 O -0.58 -17.15 15.02 10.75 0.16 -16.99 16 9 N -0.71 -11.14 5.35 -439.52 -2.35 -13.50 16 10 C 0.13 2.64 4.24 45.63 0.19 2.83 16 11 C -0.12 -2.67 7.64 30.88 0.24 -2.44 16 12 C -0.09 -2.24 1.11 -52.32 -0.06 -2.30 16 13 C -0.14 -4.20 7.64 30.88 0.24 -3.96 16 14 C 0.15 5.63 4.48 45.63 0.20 5.84 16 15 N -0.74 -35.06 5.20 -319.93 -1.67 -36.73 16 16 C -0.23 -13.51 10.45 84.03 0.88 -12.63 16 17 H 0.05 3.49 8.06 -2.91 -0.02 3.47 16 18 C -0.07 -4.05 5.50 84.86 0.47 -3.58 16 19 N -0.98 -63.97 13.97 21.65 0.30 -63.67 16 20 Si 0.96 45.98 27.74 68.60 1.90 47.89 16 21 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 22 H -0.30 -14.46 7.11 99.48 0.71 -13.75 16 23 H -0.25 -10.97 6.52 99.48 0.65 -10.32 16 24 C -0.12 -3.72 7.59 30.89 0.23 -3.49 16 25 C -0.11 -2.12 7.59 30.88 0.23 -1.88 16 26 C -0.11 -1.19 2.91 -10.80 -0.03 -1.22 16 27 C -0.15 -1.09 8.78 71.98 0.63 -0.46 16 28 C -0.14 -1.30 8.62 71.98 0.62 -0.68 16 29 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.06 0.82 7.76 -2.39 -0.02 0.80 16 33 H 0.03 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.12 1.09 6.66 -2.39 -0.02 1.08 16 35 H 0.13 0.83 6.44 -2.39 -0.02 0.82 16 36 H 0.42 3.62 8.73 -92.70 -0.81 2.81 16 37 H 0.09 2.31 7.47 -2.39 -0.02 2.29 16 38 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 39 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 40 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 41 H 0.06 1.84 8.14 -2.38 -0.02 1.82 16 42 H 0.07 2.66 8.10 -2.39 -0.02 2.64 16 43 H 0.37 16.49 5.79 -92.72 -0.54 15.96 16 44 H 0.26 15.90 8.31 -92.71 -0.77 15.13 16 45 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 46 H 0.08 2.47 8.12 -2.39 -0.02 2.45 16 47 H 0.08 1.41 8.14 -2.38 -0.02 1.39 16 48 H 0.11 1.54 8.11 -2.39 -0.02 1.52 16 49 H 0.07 0.78 7.76 -2.39 -0.02 0.76 16 50 H 0.07 0.35 6.74 -2.39 -0.02 0.34 16 51 H 0.07 0.41 8.14 -2.39 -0.02 0.39 16 52 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16 53 H 0.05 0.59 7.80 -2.39 -0.02 0.57 16 54 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 55 H 0.07 0.46 6.47 -2.39 -0.02 0.45 16 Total: -1.00 -76.29 429.57 2.54 -73.75 By element: Atomic # 1 Polarization: 31.84 SS G_CDS: -0.54 Total: 31.29 kcal Atomic # 6 Polarization: -18.88 SS G_CDS: 5.91 Total: -12.97 kcal Atomic # 7 Polarization: -110.18 SS G_CDS: -3.72 Total: -113.89 kcal Atomic # 8 Polarization: -25.05 SS G_CDS: -1.02 Total: -26.07 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 1.90 Total: 47.89 kcal Total: -76.29 2.54 -73.75 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121232967.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.121 kcal (2) G-P(sol) polarization free energy of solvation -76.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds