Wall clock time and date at job start Tue Mar 31 2020 22:02:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42896 * 109.47080 * 2 1 4 4 C 1.42900 * 114.00036 * 175.57805 * 3 2 1 5 5 H 1.08998 * 109.46724 * 325.60092 * 4 3 2 6 6 C 1.52998 * 109.47098 * 205.60667 * 4 3 2 7 7 C 1.50701 * 109.47373 * 64.99771 * 6 4 3 8 8 O 1.21277 * 119.99796 * 0.02562 * 7 6 4 9 9 N 1.34782 * 120.00008 * 179.97438 * 7 6 4 10 10 C 1.46502 * 119.99575 * 179.97438 * 9 7 6 11 11 C 1.53949 * 113.57949 * 252.72196 * 10 9 7 12 12 C 1.52910 * 86.78196 * 220.67019 * 11 10 9 13 13 C 1.52908 * 121.13780 * 150.61830 * 12 11 10 14 14 C 1.53951 * 86.78366 * 100.81860 * 13 12 11 15 15 N 1.46497 * 113.58146 * 139.33539 * 14 13 12 16 16 C 1.36938 * 120.00039 * 107.27874 * 15 14 13 17 17 H 1.07998 * 119.99896 * 0.02562 * 16 15 14 18 18 C 1.38805 * 120.00095 * 180.02562 * 16 15 14 19 19 N 1.31621 * 120.00162 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 120.00103 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47040 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.47062 * 120.00130 * 20 18 16 23 23 H 1.48501 * 109.47196 * 239.99736 * 20 18 16 24 24 C 1.52909 * 121.13242 * 259.17695 * 12 11 10 25 25 C 1.52903 * 88.04253 * 24.89727 * 12 11 10 26 26 C 1.52996 * 109.47242 * 85.60392 * 4 3 2 27 27 C 1.53005 * 109.47065 * 63.19808 * 26 4 3 28 28 C 1.52998 * 109.47359 * 183.19743 * 26 4 3 29 29 H 1.09002 * 109.47609 * 59.99166 * 1 2 3 30 30 H 1.09001 * 109.47009 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47027 * 299.99183 * 1 2 3 32 32 H 1.09010 * 109.46323 * 240.00837 * 2 1 3 33 33 H 1.08994 * 109.47304 * 120.00714 * 2 1 3 34 34 H 1.09004 * 109.47455 * 185.00191 * 6 4 3 35 35 H 1.09005 * 109.47403 * 305.00025 * 6 4 3 36 36 H 0.97001 * 120.00046 * 0.02562 * 9 7 6 37 37 H 1.08992 * 112.82254 * 23.91498 * 10 9 7 38 38 H 1.09005 * 113.66132 * 335.14024 * 11 10 9 39 39 H 1.08996 * 113.66580 * 106.19779 * 11 10 9 40 40 H 1.08999 * 113.66642 * 215.29239 * 13 12 11 41 41 H 1.09000 * 113.66112 * 346.35083 * 13 12 11 42 42 H 1.08997 * 113.58038 * 270.13041 * 14 13 12 43 43 H 0.96998 * 120.00195 * 287.28595 * 15 14 13 44 44 H 0.96999 * 120.00310 * 180.02562 * 19 18 16 45 45 H 1.08998 * 113.66732 * 13.65323 * 24 12 11 46 46 H 1.09006 * 113.65581 * 144.61591 * 24 12 11 47 47 H 1.09004 * 113.66456 * 220.62578 * 25 12 11 48 48 H 1.09003 * 113.74396 * 89.58826 * 25 12 11 49 49 H 1.08996 * 109.47413 * 303.20172 * 26 4 3 50 50 H 1.09006 * 109.46709 * 59.99950 * 27 26 4 51 51 H 1.08996 * 109.47084 * 180.02562 * 27 26 4 52 52 H 1.08998 * 109.46817 * 300.00189 * 27 26 4 53 53 H 1.09004 * 109.46953 * 53.96442 * 28 26 4 54 54 H 1.08998 * 109.47408 * 173.96553 * 28 26 4 55 55 H 1.08997 * 109.47099 * 293.96715 * 28 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4272 1.4614 0.1007 5 1 3.8122 0.6604 0.7317 6 6 3.7877 2.8144 0.7174 7 6 3.2817 2.8708 2.1358 8 8 2.6913 1.9221 2.6071 9 7 3.4862 3.9752 2.8808 10 6 2.9938 4.0302 4.2595 11 6 1.7742 4.9519 4.4415 12 6 2.4248 5.4115 5.7468 13 6 2.1893 6.8195 6.2945 14 6 1.1763 6.1802 7.2615 15 7 1.2332 6.7305 8.6180 16 6 0.2342 7.5533 9.0656 17 1 -0.5958 7.7962 8.4186 18 6 0.2884 8.0751 10.3507 19 7 1.3001 7.7796 11.1389 20 14 -1.0747 9.1970 10.9614 21 1 -2.0891 9.3714 9.8910 22 1 -1.7158 8.5917 12.1564 23 1 -0.5031 10.5191 11.3226 24 6 1.9597 4.8652 7.0971 25 6 3.7756 5.0094 5.1539 26 6 4.0475 1.3550 -1.2939 27 6 3.5687 2.5251 -2.1556 28 6 5.5725 1.3972 -1.1784 29 1 -0.3634 0.5140 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5137 0.8901 32 1 1.8932 -0.5138 -0.8902 33 1 1.8934 -0.5139 0.8899 34 1 4.8706 2.9389 0.7126 35 1 3.3277 3.6131 0.1355 36 1 3.9588 4.7339 2.5039 37 1 2.8655 3.0426 4.7022 38 1 1.7027 5.7366 3.6883 39 1 0.8371 4.4142 4.5854 40 1 3.0599 7.2466 6.7924 41 1 1.7363 7.4995 5.5731 42 1 0.1623 6.1362 6.8643 43 1 1.9785 6.5122 9.1992 44 1 1.3378 8.1439 12.0371 45 1 1.3233 3.9839 7.0168 46 1 2.7661 4.7413 7.8200 47 1 4.4373 4.5176 5.8670 48 1 4.2679 5.8094 4.6009 49 1 3.7439 0.4156 -1.7559 50 1 3.8723 3.4646 -1.6936 51 1 4.0103 2.4491 -3.1493 52 1 2.4823 2.4951 -2.2379 53 1 5.9053 0.6299 -0.4793 54 1 6.0162 1.2142 -2.1570 55 1 5.8825 2.3775 -0.8164 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001121232970.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:02:51 Heat of formation + Delta-G solvation = -70.422569 kcal Electronic energy + Delta-G solvation = -29704.850706 eV Core-core repulsion = 25741.979268 eV Total energy + Delta-G solvation = -3962.871437 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.67856 -40.65905 -39.21712 -37.18126 -36.22704 -35.21635 -33.61903 -32.23342 -31.51367 -30.47732 -27.98750 -26.75613 -26.67385 -26.16291 -25.54002 -23.81470 -23.49210 -21.65223 -21.43505 -20.28098 -19.46127 -18.67259 -18.22382 -17.79406 -17.29229 -16.90359 -16.46459 -16.14862 -16.01801 -15.88752 -15.68240 -15.30664 -14.92978 -14.73372 -14.58175 -14.18023 -13.98708 -13.80912 -13.61771 -13.57280 -13.39370 -13.08769 -13.02324 -12.99795 -12.95818 -12.85375 -12.69903 -12.45873 -12.30568 -12.23278 -12.08368 -12.04776 -11.90274 -11.83054 -11.71646 -11.39918 -11.34111 -11.05819 -10.88416 -10.81444 -10.61132 -10.28175 -9.91667 -8.97227 -7.95007 -5.23052 1.46700 1.47472 1.57648 1.74612 2.28556 2.56102 2.80436 3.36372 3.51699 3.54298 3.66605 3.71206 3.80832 3.87680 3.99884 4.03867 4.16746 4.21998 4.27972 4.30027 4.34488 4.38061 4.45928 4.50163 4.52366 4.59654 4.61542 4.71150 4.80819 4.83663 4.86360 4.91301 4.93151 4.94156 5.00108 5.05620 5.06891 5.08980 5.09523 5.11105 5.16510 5.24694 5.26714 5.29783 5.44765 5.47679 5.49668 5.57480 5.68646 5.70886 6.27748 6.38801 6.68432 7.33205 7.39056 8.10956 8.34146 9.28567 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.022542 B = 0.001779 C = 0.001714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.853111 B =15731.327827 C =16331.329505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.061 3.939 3 O -0.391 6.391 4 C 0.108 3.892 5 H 0.050 0.950 6 C -0.136 4.136 7 C 0.508 3.492 8 O -0.580 6.580 9 N -0.710 5.710 10 C 0.132 3.868 11 C -0.120 4.120 12 C -0.090 4.090 13 C -0.137 4.137 14 C 0.146 3.854 15 N -0.729 5.729 16 C -0.242 4.242 17 H 0.075 0.925 18 C -0.079 4.079 19 N -0.970 5.970 20 Si 0.973 3.027 21 H -0.266 1.266 22 H -0.294 1.294 23 H -0.292 1.292 24 C -0.123 4.123 25 C -0.115 4.115 26 C -0.114 4.114 27 C -0.143 4.143 28 C -0.148 4.148 29 H 0.064 0.936 30 H 0.085 0.915 31 H 0.043 0.957 32 H 0.058 0.942 33 H 0.035 0.965 34 H 0.137 0.863 35 H 0.118 0.882 36 H 0.416 0.584 37 H 0.090 0.910 38 H 0.099 0.901 39 H 0.057 0.943 40 H 0.067 0.933 41 H 0.062 0.938 42 H 0.067 0.933 43 H 0.373 0.627 44 H 0.251 0.749 45 H 0.062 0.938 46 H 0.075 0.925 47 H 0.074 0.926 48 H 0.108 0.892 49 H 0.068 0.932 50 H 0.067 0.933 51 H 0.061 0.939 52 H 0.046 0.954 53 H 0.053 0.947 54 H 0.066 0.934 55 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.986 -13.233 -31.358 35.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.015 4.015 3 O -0.310 6.310 4 C 0.050 3.950 5 H 0.068 0.932 6 C -0.175 4.175 7 C 0.297 3.703 8 O -0.459 6.459 9 N -0.361 5.361 10 C 0.026 3.974 11 C -0.159 4.159 12 C -0.092 4.092 13 C -0.177 4.177 14 C 0.037 3.963 15 N -0.366 5.366 16 C -0.374 4.374 17 H 0.093 0.907 18 C -0.271 4.271 19 N -0.621 5.621 20 Si 0.802 3.198 21 H -0.191 1.191 22 H -0.222 1.222 23 H -0.220 1.220 24 C -0.162 4.162 25 C -0.154 4.154 26 C -0.133 4.133 27 C -0.200 4.200 28 C -0.205 4.205 29 H 0.083 0.917 30 H 0.104 0.896 31 H 0.062 0.938 32 H 0.076 0.924 33 H 0.053 0.947 34 H 0.154 0.846 35 H 0.136 0.864 36 H 0.253 0.747 37 H 0.108 0.892 38 H 0.118 0.882 39 H 0.076 0.924 40 H 0.086 0.914 41 H 0.081 0.919 42 H 0.085 0.915 43 H 0.205 0.795 44 H 0.059 0.941 45 H 0.081 0.919 46 H 0.093 0.907 47 H 0.092 0.908 48 H 0.126 0.874 49 H 0.086 0.914 50 H 0.086 0.914 51 H 0.080 0.920 52 H 0.065 0.935 53 H 0.072 0.928 54 H 0.085 0.915 55 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 9.261 -13.651 -31.036 35.148 hybrid contribution -0.299 0.533 1.159 1.310 sum 8.962 -13.118 -29.877 33.839 Atomic orbital electron populations 1.21720 0.93627 1.02919 1.02156 1.22452 0.95782 0.83679 0.99625 1.87865 1.21699 1.26956 1.94510 1.21898 0.81281 0.96471 0.95357 0.93218 1.21996 1.04642 0.99822 0.91041 1.21220 0.78376 0.81934 0.88812 1.90689 1.42964 1.38023 1.74233 1.45931 1.58801 1.18287 1.13117 1.22252 0.94815 0.98378 0.81920 1.23158 0.97717 0.99122 0.95873 1.21897 0.97666 0.96406 0.93182 1.23387 1.00056 0.95483 0.98803 1.21911 0.96451 0.93214 0.84748 1.42606 1.25857 1.56037 1.12138 1.19740 1.01028 1.19850 0.96784 0.90701 1.25576 1.00809 1.03424 0.97249 1.69824 1.33234 1.50590 1.08472 0.85075 0.78767 0.78031 0.77908 1.19074 1.22150 1.21959 1.23079 0.99670 0.97590 0.95882 1.23130 0.95692 0.98510 0.98020 1.21591 0.96696 1.00115 0.94931 1.21796 1.00942 0.97783 0.99465 1.21886 0.93292 1.02782 1.02588 0.91716 0.89611 0.93773 0.92379 0.94671 0.84566 0.86383 0.74660 0.89198 0.88232 0.92408 0.91406 0.91905 0.91462 0.79465 0.94057 0.91909 0.90652 0.90771 0.87354 0.91381 0.91401 0.92027 0.93477 0.92777 0.91520 0.90972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.50 10.28 71.98 0.74 -1.76 16 2 C 0.06 1.13 6.48 71.98 0.47 1.60 16 3 O -0.39 -8.25 8.69 -135.21 -1.18 -9.42 16 4 C 0.11 1.71 1.43 30.59 0.04 1.75 16 5 H 0.05 0.94 7.59 -2.39 -0.02 0.92 16 6 C -0.14 -1.71 4.65 29.85 0.14 -1.57 16 7 C 0.51 10.49 7.71 87.66 0.68 11.17 16 8 O -0.58 -17.67 15.02 10.75 0.16 -17.51 16 9 N -0.71 -11.91 5.35 -439.52 -2.35 -14.27 16 10 C 0.13 2.89 4.24 45.63 0.19 3.08 16 11 C -0.12 -2.88 7.64 30.88 0.24 -2.64 16 12 C -0.09 -2.44 1.11 -52.32 -0.06 -2.50 16 13 C -0.14 -4.55 7.64 30.88 0.24 -4.32 16 14 C 0.15 5.91 4.48 45.63 0.20 6.12 16 15 N -0.73 -37.70 5.40 -319.94 -1.73 -39.43 16 16 C -0.24 -13.74 9.97 84.03 0.84 -12.90 16 17 H 0.08 4.09 7.83 -2.91 -0.02 4.07 16 18 C -0.08 -4.59 5.50 84.86 0.47 -4.13 16 19 N -0.97 -60.27 13.06 21.65 0.28 -59.98 16 20 Si 0.97 46.86 29.55 68.60 2.03 48.88 16 21 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 22 H -0.29 -14.18 7.11 99.48 0.71 -13.47 16 23 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 24 C -0.12 -4.15 7.59 30.88 0.23 -3.92 16 25 C -0.12 -2.39 7.59 30.88 0.23 -2.15 16 26 C -0.11 -1.22 2.85 -10.79 -0.03 -1.26 16 27 C -0.14 -1.39 8.64 71.98 0.62 -0.76 16 28 C -0.15 -1.06 8.75 71.98 0.63 -0.43 16 29 H 0.06 1.01 8.14 -2.39 -0.02 1.00 16 30 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.04 0.92 8.14 -2.38 -0.02 0.90 16 32 H 0.06 0.84 7.58 -2.38 -0.02 0.83 16 33 H 0.03 0.74 7.99 -2.39 -0.02 0.72 16 34 H 0.14 0.85 6.41 -2.38 -0.02 0.84 16 35 H 0.12 1.19 6.67 -2.38 -0.02 1.17 16 36 H 0.42 4.04 8.73 -92.71 -0.81 3.23 16 37 H 0.09 2.45 7.46 -2.39 -0.02 2.43 16 38 H 0.10 2.09 8.14 -2.38 -0.02 2.07 16 39 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 40 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 41 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 42 H 0.07 2.78 8.10 -2.39 -0.02 2.76 16 43 H 0.37 20.65 7.92 -92.71 -0.73 19.92 16 44 H 0.25 15.04 8.31 -92.71 -0.77 14.27 16 45 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 46 H 0.07 2.63 8.12 -2.38 -0.02 2.61 16 47 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 48 H 0.11 1.75 8.12 -2.39 -0.02 1.73 16 49 H 0.07 0.79 7.56 -2.39 -0.02 0.77 16 50 H 0.07 0.50 6.48 -2.38 -0.02 0.49 16 51 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 52 H 0.05 0.62 7.77 -2.39 -0.02 0.60 16 53 H 0.05 0.43 8.14 -2.39 -0.02 0.41 16 54 H 0.07 0.39 8.14 -2.39 -0.02 0.38 16 55 H 0.07 0.34 6.71 -2.39 -0.02 0.32 16 Total: -1.00 -73.40 432.02 2.41 -71.00 By element: Atomic # 1 Polarization: 36.01 SS G_CDS: -0.68 Total: 35.33 kcal Atomic # 6 Polarization: -20.48 SS G_CDS: 5.87 Total: -14.61 kcal Atomic # 7 Polarization: -109.88 SS G_CDS: -3.80 Total: -113.68 kcal Atomic # 8 Polarization: -25.91 SS G_CDS: -1.01 Total: -26.93 kcal Atomic # 14 Polarization: 46.86 SS G_CDS: 2.03 Total: 48.88 kcal Total: -73.40 2.41 -71.00 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121232970.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.574 kcal (2) G-P(sol) polarization free energy of solvation -73.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds