Wall clock time and date at job start Tue Mar 31 2020 22:43:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42892 * 114.00437 * 2 1 4 4 C 1.52996 * 109.47465 * 179.97438 * 3 2 1 5 5 C 1.53000 * 109.47435 * 184.42087 * 4 3 2 6 6 N 1.46496 * 109.46233 * 302.93559 * 5 4 3 7 7 C 1.34781 * 119.99733 * 303.03638 * 6 5 4 8 8 O 1.21273 * 120.00209 * 354.97617 * 7 6 5 9 9 C 1.50704 * 119.99720 * 174.98383 * 7 6 5 10 10 C 1.52997 * 109.46939 * 179.97438 * 9 7 6 11 11 C 1.52997 * 109.47312 * 179.97438 * 10 9 7 12 12 C 1.53001 * 109.46999 * 299.99973 * 11 10 9 13 13 C 1.52997 * 109.47066 * 59.99876 * 12 11 10 14 14 C 1.52997 * 109.47312 * 299.99932 * 13 12 11 15 15 C 1.53046 * 109.44875 * 62.90063 * 5 4 3 16 16 C 1.53186 * 109.31184 * 181.37752 * 15 5 4 17 17 N 1.46927 * 108.78045 * 305.36527 * 16 15 5 18 18 C 1.36932 * 120.63296 * 233.63138 * 17 16 15 19 19 H 1.08003 * 119.99905 * 31.75460 * 18 17 16 20 20 C 1.38814 * 120.00102 * 211.75847 * 18 17 16 21 21 N 1.31618 * 119.99987 * 10.79894 * 20 18 17 22 22 Si 1.86800 * 119.99755 * 190.79895 * 20 18 17 23 23 H 1.48500 * 109.47374 * 60.00094 * 22 20 18 24 24 H 1.48507 * 109.46833 * 180.02562 * 22 20 18 25 25 H 1.48507 * 109.47205 * 299.99769 * 22 20 18 26 26 C 1.46926 * 118.73718 * 53.60926 * 17 16 15 27 27 C 1.53043 * 109.46042 * 182.95973 * 5 4 3 28 28 H 1.09008 * 109.46666 * 60.00296 * 1 2 3 29 29 H 1.09003 * 109.47230 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47295 * 300.00994 * 1 2 3 31 31 H 1.08998 * 109.47727 * 59.99533 * 3 2 1 32 32 H 1.09004 * 109.47113 * 299.99332 * 3 2 1 33 33 H 1.09006 * 109.47382 * 64.41885 * 4 3 2 34 34 H 1.09003 * 109.46981 * 304.41942 * 4 3 2 35 35 H 0.96995 * 120.00318 * 123.02767 * 6 5 4 36 36 H 1.08997 * 109.47376 * 59.99460 * 9 7 6 37 37 H 1.08997 * 109.47432 * 59.99612 * 10 9 7 38 38 H 1.08999 * 109.47235 * 299.99881 * 10 9 7 39 39 H 1.09001 * 109.47569 * 179.97438 * 11 10 9 40 40 H 1.09007 * 109.46886 * 59.99578 * 11 10 9 41 41 H 1.09001 * 109.46825 * 179.97438 * 12 11 10 42 42 H 1.08997 * 109.47006 * 299.99603 * 12 11 10 43 43 H 1.08997 * 109.47432 * 59.99987 * 13 12 11 44 44 H 1.08999 * 109.47235 * 179.97438 * 13 12 11 45 45 H 1.09007 * 109.46886 * 300.00422 * 14 13 12 46 46 H 1.09001 * 109.47569 * 180.02562 * 14 13 12 47 47 H 1.09000 * 109.49431 * 301.33212 * 15 5 4 48 48 H 1.09001 * 109.49422 * 61.42960 * 15 5 4 49 49 H 1.08999 * 109.58777 * 185.57719 * 16 15 5 50 50 H 1.09003 * 109.58648 * 65.15444 * 16 15 5 51 51 H 0.96993 * 119.99556 * 179.97438 * 21 20 18 52 52 H 1.08994 * 109.58493 * 186.61156 * 26 17 16 53 53 H 1.08999 * 109.70707 * 66.24714 * 26 17 16 54 54 H 1.08996 * 109.49800 * 298.58004 * 27 5 4 55 55 H 1.09000 * 109.49444 * 58.67883 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3053 0.0000 4 6 3.5354 1.1845 0.0006 5 6 4.1575 2.5779 0.1118 6 7 3.6773 3.4161 -0.9896 7 6 3.8622 3.0231 -2.2655 8 8 4.5049 2.0229 -2.5049 9 6 3.2703 3.8267 -3.3947 10 6 3.6260 3.1693 -4.7296 11 6 3.0246 3.9848 -5.8760 12 6 1.5032 4.0359 -5.7221 13 6 1.1475 4.6933 -4.3871 14 6 1.7489 3.8779 -3.2408 15 6 3.7557 3.2103 1.4464 16 6 4.3516 4.6184 1.5395 17 7 5.8026 4.5331 1.3248 18 6 6.6752 5.0676 2.2347 19 1 6.4172 5.0872 3.2833 20 6 7.8914 5.5844 1.8094 21 7 8.1199 5.7571 0.5248 22 14 9.2035 6.0347 3.0604 23 1 9.5794 4.8278 3.8398 24 1 10.3996 6.5616 2.3553 25 1 8.6745 7.0733 3.9806 26 6 6.2996 3.8630 0.1154 27 6 5.6818 2.4632 0.0382 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5140 0.8899 31 1 1.6887 1.8464 0.8899 32 1 1.6888 1.8463 -0.8901 33 1 3.8630 0.7133 -0.9261 34 1 3.8514 0.5769 0.8487 35 1 3.2263 4.2538 -0.8006 36 1 3.6729 4.8393 -3.3700 37 1 3.2237 2.1566 -4.7545 38 1 4.7099 3.1325 -4.8391 39 1 3.2784 3.5167 -6.8271 40 1 3.4266 4.9977 -5.8512 41 1 1.0748 4.6173 -6.5386 42 1 1.1013 3.0230 -5.7469 43 1 1.5494 5.7062 -4.3624 44 1 0.0636 4.7302 -4.2777 45 1 1.3469 2.8649 -3.2655 46 1 1.4951 4.3460 -2.2896 47 1 2.6691 3.2703 1.5080 48 1 4.1340 2.6002 2.2666 49 1 4.1523 5.0351 2.5268 50 1 3.9060 5.2551 0.7752 51 1 8.9696 6.1185 0.2277 52 1 7.3854 3.7810 0.1631 53 1 6.0148 4.4371 -0.7663 54 1 6.0419 1.8601 0.8717 55 1 5.9661 1.9914 -0.9024 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001150902551.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:43:56 Heat of formation + Delta-G solvation = -106.357462 kcal Electronic energy + Delta-G solvation = -32500.371691 eV Core-core repulsion = 28535.942000 eV Total energy + Delta-G solvation = -3964.429691 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.80581 -39.74197 -38.64400 -38.11353 -36.19123 -33.76149 -33.15907 -31.86111 -31.60429 -31.41311 -30.32918 -27.65092 -26.41373 -24.85817 -24.60637 -23.66808 -23.38551 -22.11650 -21.54054 -20.55966 -20.08838 -18.81539 -18.12655 -17.45221 -16.97539 -16.82064 -16.53549 -16.14344 -15.88847 -15.70564 -15.40620 -15.26155 -15.05151 -14.98769 -14.92976 -14.64738 -14.25622 -13.98338 -13.85933 -13.56120 -13.28833 -13.14062 -13.05652 -12.96454 -12.74603 -12.70427 -12.58554 -12.29271 -12.24963 -12.13260 -12.07013 -12.01797 -11.93769 -11.79894 -11.52236 -11.34250 -11.28084 -11.16882 -10.98125 -10.57656 -10.53424 -10.24799 -9.88505 -8.59152 -7.85066 -5.36208 1.46025 1.48593 1.54625 1.79345 2.31332 2.51169 2.82638 3.31167 3.61608 3.71875 3.75850 3.81285 3.86430 3.99736 4.12418 4.18457 4.29184 4.31522 4.34866 4.40509 4.45285 4.48687 4.53971 4.55439 4.58423 4.60216 4.62162 4.69683 4.74221 4.76192 4.84726 4.91224 4.99058 5.00958 5.06584 5.13357 5.14938 5.18391 5.19276 5.26959 5.27679 5.29630 5.35729 5.38155 5.42266 5.50891 5.57624 5.64720 5.71094 5.80066 6.27389 6.42275 6.73310 7.17295 7.42801 7.87996 8.40665 9.19895 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.010498 B = 0.003917 C = 0.003138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2666.536444 B = 7146.273731 C = 8921.848667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.420 6.420 3 C 0.075 3.925 4 C -0.120 4.120 5 C 0.202 3.798 6 N -0.706 5.706 7 C 0.514 3.486 8 O -0.574 6.574 9 C -0.103 4.103 10 C -0.095 4.095 11 C -0.116 4.116 12 C -0.118 4.118 13 C -0.115 4.115 14 C -0.102 4.102 15 C -0.127 4.127 16 C 0.142 3.858 17 N -0.606 5.606 18 C -0.263 4.263 19 H 0.068 0.932 20 C -0.048 4.048 21 N -0.935 5.935 22 Si 0.965 3.035 23 H -0.280 1.280 24 H -0.297 1.297 25 H -0.272 1.272 26 C 0.198 3.802 27 C -0.138 4.138 28 H 0.047 0.953 29 H 0.095 0.905 30 H 0.053 0.947 31 H 0.067 0.933 32 H 0.049 0.951 33 H 0.063 0.937 34 H 0.070 0.930 35 H 0.407 0.593 36 H 0.097 0.903 37 H 0.056 0.944 38 H 0.044 0.956 39 H 0.068 0.932 40 H 0.064 0.936 41 H 0.076 0.924 42 H 0.060 0.940 43 H 0.068 0.932 44 H 0.080 0.920 45 H 0.061 0.939 46 H 0.078 0.922 47 H 0.098 0.902 48 H 0.070 0.930 49 H 0.060 0.940 50 H 0.026 0.974 51 H 0.247 0.753 52 H 0.039 0.961 53 H -0.004 1.004 54 H 0.050 0.950 55 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.352 -4.112 -7.697 22.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.340 6.340 3 C -0.001 4.001 4 C -0.159 4.159 5 C 0.116 3.884 6 N -0.358 5.358 7 C 0.302 3.698 8 O -0.453 6.453 9 C -0.124 4.124 10 C -0.133 4.133 11 C -0.154 4.154 12 C -0.156 4.156 13 C -0.152 4.152 14 C -0.140 4.140 15 C -0.166 4.166 16 C 0.017 3.983 17 N -0.330 5.330 18 C -0.394 4.394 19 H 0.085 0.915 20 C -0.243 4.243 21 N -0.581 5.581 22 Si 0.793 3.207 23 H -0.206 1.206 24 H -0.224 1.224 25 H -0.197 1.197 26 C 0.072 3.928 27 C -0.178 4.178 28 H 0.066 0.934 29 H 0.113 0.887 30 H 0.072 0.928 31 H 0.085 0.915 32 H 0.068 0.932 33 H 0.082 0.918 34 H 0.089 0.911 35 H 0.243 0.757 36 H 0.115 0.885 37 H 0.075 0.925 38 H 0.063 0.937 39 H 0.087 0.913 40 H 0.083 0.917 41 H 0.094 0.906 42 H 0.079 0.921 43 H 0.087 0.913 44 H 0.099 0.901 45 H 0.079 0.921 46 H 0.097 0.903 47 H 0.116 0.884 48 H 0.089 0.911 49 H 0.079 0.921 50 H 0.044 0.956 51 H 0.056 0.944 52 H 0.057 0.943 53 H 0.014 0.986 54 H 0.069 0.931 55 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -19.671 -4.912 -7.908 21.763 hybrid contribution 1.298 0.772 0.552 1.608 sum -18.373 -4.140 -7.356 20.219 Atomic orbital electron populations 1.22917 0.79500 1.03706 1.00878 1.87840 1.21568 1.28982 1.95590 1.22469 0.92664 0.84207 1.00776 1.21778 0.94481 0.96549 1.03053 1.19951 0.92305 0.89314 0.86811 1.46045 1.59815 1.24899 1.05012 1.21113 0.79069 0.85164 0.84430 1.90609 1.41333 1.28716 1.84661 1.21374 0.98368 0.99835 0.92823 1.21267 0.99949 0.99065 0.93042 1.21546 0.96368 1.00095 0.97353 1.21555 0.94949 1.01207 0.97881 1.21530 1.01149 0.99038 0.93488 1.21502 0.90897 1.01250 1.00334 1.22288 1.01373 0.97878 0.95050 1.21068 0.83685 0.94334 0.99212 1.44204 1.01100 1.64580 1.23118 1.19479 0.98675 1.31942 0.89265 0.91474 1.25889 1.01983 0.99108 0.97350 1.70147 1.23997 1.49215 1.14724 0.85382 0.78552 0.78180 0.78538 1.20647 1.22351 1.19731 1.20267 0.96868 0.88553 0.87130 1.22379 0.95922 0.99024 1.00520 0.93415 0.88684 0.92822 0.91524 0.93234 0.91847 0.91106 0.75681 0.88512 0.92518 0.93701 0.91282 0.91682 0.90578 0.92127 0.91341 0.90113 0.92069 0.90302 0.88423 0.91097 0.92116 0.95638 0.94374 0.94262 0.98606 0.93104 0.92590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 11.01 113.37 1.25 1.69 16 2 O -0.42 -10.98 10.70 -148.98 -1.59 -12.57 16 3 C 0.07 1.84 5.50 71.98 0.40 2.24 16 4 C -0.12 -3.68 4.32 30.59 0.13 -3.55 16 5 C 0.20 6.55 0.35 3.63 0.00 6.55 16 6 N -0.71 -20.57 3.22 -422.79 -1.36 -21.93 16 7 C 0.51 16.10 6.33 87.66 0.56 16.65 16 8 O -0.57 -22.45 12.26 -3.01 -0.04 -22.49 16 9 C -0.10 -2.45 2.52 -11.54 -0.03 -2.48 16 10 C -0.10 -2.32 4.49 30.59 0.14 -2.18 16 11 C -0.12 -2.08 5.92 30.59 0.18 -1.90 16 12 C -0.12 -1.69 5.92 30.59 0.18 -1.51 16 13 C -0.11 -1.56 5.92 30.59 0.18 -1.38 16 14 C -0.10 -1.75 5.10 30.59 0.16 -1.60 16 15 C -0.13 -3.76 4.72 30.67 0.14 -3.61 16 16 C 0.14 5.27 6.24 86.36 0.54 5.81 16 17 N -0.61 -29.59 2.98 -699.09 -2.09 -31.68 16 18 C -0.26 -14.29 9.57 84.03 0.80 -13.49 16 19 H 0.07 3.51 7.85 -2.91 -0.02 3.49 16 20 C -0.05 -2.68 5.04 84.86 0.43 -2.25 16 21 N -0.94 -56.02 11.09 21.65 0.24 -55.78 16 22 Si 0.97 45.14 29.57 68.60 2.03 47.17 16 23 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 24 H -0.30 -14.10 7.11 99.48 0.71 -13.40 16 25 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 26 C 0.20 9.88 4.99 86.37 0.43 10.31 16 27 C -0.14 -5.81 4.71 30.68 0.14 -5.67 16 28 H 0.05 0.72 8.14 -2.38 -0.02 0.70 16 29 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.07 1.39 6.26 -2.39 -0.01 1.38 16 32 H 0.05 1.17 7.47 -2.39 -0.02 1.15 16 33 H 0.06 2.31 6.21 -2.38 -0.01 2.30 16 34 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 35 H 0.41 10.20 6.76 -92.71 -0.63 9.57 16 36 H 0.10 2.30 8.14 -2.39 -0.02 2.28 16 37 H 0.06 1.48 8.10 -2.39 -0.02 1.46 16 38 H 0.04 1.29 8.10 -2.39 -0.02 1.27 16 39 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 40 H 0.06 1.14 8.14 -2.38 -0.02 1.12 16 41 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 42 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 43 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 44 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 45 H 0.06 1.12 8.14 -2.38 -0.02 1.10 16 46 H 0.08 1.16 7.69 -2.39 -0.02 1.14 16 47 H 0.10 2.15 6.34 -2.39 -0.02 2.14 16 48 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 49 H 0.06 2.19 7.93 -2.39 -0.02 2.17 16 50 H 0.03 0.90 6.88 -2.39 -0.02 0.88 16 51 H 0.25 14.52 8.31 -92.71 -0.77 13.75 16 52 H 0.04 2.29 6.14 -2.39 -0.01 2.28 16 53 H 0.00 -0.22 7.74 -2.39 -0.02 -0.24 16 54 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 55 H 0.06 2.52 6.26 -2.39 -0.01 2.51 16 Total: -1.00 -69.96 405.86 3.05 -66.91 By element: Atomic # 1 Polarization: 26.49 SS G_CDS: 0.23 Total: 26.71 kcal Atomic # 6 Polarization: -1.99 SS G_CDS: 5.63 Total: 3.65 kcal Atomic # 7 Polarization: -106.18 SS G_CDS: -3.20 Total: -109.38 kcal Atomic # 8 Polarization: -33.42 SS G_CDS: -1.63 Total: -35.06 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.17 kcal Total: -69.96 3.05 -66.91 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001150902551.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.452 kcal (2) G-P(sol) polarization free energy of solvation -69.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds