Wall clock time and date at job start Tue Mar 31 2020 22:44:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42900 * 114.00091 * 2 1 4 4 C 1.53000 * 109.47174 * 180.02562 * 3 2 1 5 5 C 1.52997 * 109.47209 * 182.54018 * 4 3 2 6 6 N 1.46497 * 109.45952 * 304.37835 * 5 4 3 7 7 C 1.34776 * 120.00036 * 299.88740 * 6 5 4 8 8 O 1.21277 * 119.99753 * 354.71272 * 7 6 5 9 9 C 1.50702 * 119.99961 * 174.71617 * 7 6 5 10 10 C 1.52999 * 109.47265 * 179.97438 * 9 7 6 11 11 C 1.54270 * 110.02995 * 292.90696 * 10 9 7 12 12 C 1.54957 * 104.16017 * 217.13592 * 11 10 9 13 13 C 1.54894 * 102.77895 * 37.88708 * 12 11 10 14 14 C 1.53870 * 110.03319 * 175.69031 * 10 9 7 15 15 C 1.53043 * 109.44712 * 64.34330 * 5 4 3 16 16 C 1.53194 * 109.31321 * 181.37937 * 15 5 4 17 17 N 1.46926 * 108.77202 * 305.36708 * 16 15 5 18 18 C 1.36942 * 120.62974 * 233.62826 * 17 16 15 19 19 H 1.08002 * 120.00066 * 144.43279 * 18 17 16 20 20 C 1.38806 * 119.99984 * 324.42883 * 18 17 16 21 21 N 1.31617 * 120.00194 * 166.09451 * 20 18 17 22 22 Si 1.86803 * 120.00228 * 346.09978 * 20 18 17 23 23 H 1.48500 * 109.47455 * 84.74238 * 22 20 18 24 24 H 1.48501 * 109.47207 * 204.74406 * 22 20 18 25 25 H 1.48503 * 109.46705 * 324.74104 * 22 20 18 26 26 C 1.46928 * 118.73999 * 53.60805 * 17 16 15 27 27 C 1.53036 * 109.46071 * 184.40345 * 5 4 3 28 28 H 1.09004 * 109.47075 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46860 * 299.99617 * 1 2 3 30 30 H 1.08998 * 109.47029 * 59.99996 * 1 2 3 31 31 H 1.08996 * 109.47217 * 60.00149 * 3 2 1 32 32 H 1.09000 * 109.46644 * 300.00407 * 3 2 1 33 33 H 1.09000 * 109.46979 * 62.53747 * 4 3 2 34 34 H 1.08996 * 109.46767 * 302.54098 * 4 3 2 35 35 H 0.97009 * 120.00063 * 119.88435 * 6 5 4 36 36 H 1.09007 * 109.47377 * 59.99566 * 9 7 6 37 37 H 1.09006 * 109.47296 * 299.99963 * 9 7 6 38 38 H 1.08999 * 110.01697 * 54.29622 * 10 9 7 39 39 H 1.08999 * 110.48781 * 335.78340 * 11 10 9 40 40 H 1.08994 * 110.48666 * 98.42624 * 11 10 9 41 41 H 1.09004 * 110.72204 * 279.57593 * 12 11 10 42 42 H 1.09001 * 110.92611 * 156.29524 * 12 11 10 43 43 H 1.08992 * 110.48794 * 203.40588 * 13 12 11 44 44 H 1.08999 * 110.59722 * 80.81389 * 13 12 11 45 45 H 1.09002 * 110.03242 * 238.56979 * 14 10 9 46 46 H 1.09006 * 110.03504 * 359.97438 * 14 10 9 47 47 H 1.08997 * 109.49744 * 301.33352 * 15 5 4 48 48 H 1.09001 * 109.49809 * 61.42821 * 15 5 4 49 49 H 1.08998 * 109.58604 * 185.58139 * 16 15 5 50 50 H 1.08998 * 109.58660 * 65.14926 * 16 15 5 51 51 H 0.97004 * 120.00117 * 180.02562 * 21 20 18 52 52 H 1.09003 * 109.58302 * 186.59933 * 26 17 16 53 53 H 1.09000 * 109.70465 * 66.24759 * 26 17 16 54 54 H 1.08999 * 109.49851 * 298.58224 * 27 5 4 55 55 H 1.09002 * 109.49653 * 58.67976 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 4.1577 2.5809 0.0633 6 7 3.6472 3.3938 -1.0433 7 6 3.8547 3.0048 -2.3169 8 8 4.5448 2.0351 -2.5500 9 6 3.2292 3.7748 -3.4514 10 6 3.6200 3.1295 -4.7824 11 6 5.1334 3.3004 -5.0283 12 6 5.2447 3.5409 -6.5550 13 6 4.0039 4.4183 -6.8549 14 6 2.9021 3.8396 -5.9434 15 6 3.7901 3.2421 1.3936 16 6 4.3858 4.6528 1.4399 17 7 5.8307 4.5644 1.1889 18 6 6.7261 5.1199 2.0635 19 1 7.6737 4.6353 2.2468 20 6 6.4158 6.3060 2.7145 21 7 7.1344 6.6987 3.7449 22 14 4.9782 7.3448 2.1282 23 1 3.7218 6.8408 2.7385 24 1 5.1920 8.7581 2.5310 25 1 4.8782 7.2614 0.6489 26 6 6.2968 3.8682 -0.0181 27 6 5.6797 2.4664 -0.0480 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.6887 1.8464 0.8900 32 1 1.6886 1.8463 -0.8900 33 1 3.8599 0.6837 -0.9127 34 1 3.8543 0.6047 0.8654 35 1 3.1598 4.2122 -0.8594 36 1 3.5833 4.8055 -3.4298 37 1 2.1444 3.7612 -3.3453 38 1 3.3603 2.0709 -4.7744 39 1 5.5145 4.1606 -4.4780 40 1 5.6707 2.3958 -4.7437 41 1 5.1914 2.5978 -7.0989 42 1 6.1632 4.0745 -6.7991 43 1 3.7179 4.3292 -7.9029 44 1 4.2006 5.4600 -6.6013 45 1 2.2945 3.1255 -6.4993 46 1 2.2748 4.6437 -5.5586 47 1 2.7054 3.3021 1.4826 48 1 4.1910 2.6508 2.2169 49 1 4.2118 5.0908 2.4227 50 1 3.9190 5.2718 0.6738 51 1 6.9173 7.5273 4.2000 52 1 7.3837 3.7887 0.0027 53 1 5.9879 4.4224 -0.9044 54 1 6.0628 1.8823 0.7888 55 1 5.9400 1.9743 -0.9851 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001150918163.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:44:00 Heat of formation + Delta-G solvation = -99.167682 kcal Electronic energy + Delta-G solvation = -32194.761075 eV Core-core repulsion = 28230.643156 eV Total energy + Delta-G solvation = -3964.117919 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.74655 -39.72604 -38.69259 -38.31703 -36.24811 -33.93509 -33.34300 -32.14381 -31.82137 -30.75617 -29.48633 -27.74126 -26.79886 -26.20594 -24.56902 -24.16184 -22.33106 -21.88593 -21.48640 -20.36463 -20.14688 -18.90076 -18.13332 -17.64602 -17.14713 -16.93161 -16.59179 -16.40295 -16.13992 -15.83591 -15.69883 -15.52367 -15.30931 -15.08502 -14.71535 -14.31224 -14.26302 -14.21250 -14.13019 -13.87920 -13.47700 -13.32206 -13.09460 -12.92213 -12.66929 -12.45573 -12.31604 -12.24661 -12.09771 -12.08152 -11.97734 -11.89253 -11.79993 -11.66757 -11.60622 -11.48819 -11.40350 -11.32872 -11.23287 -10.71441 -10.58865 -10.29056 -9.90831 -8.78624 -8.15854 -5.59070 1.30640 1.42888 1.53046 1.83059 2.30312 2.43062 2.79981 3.11383 3.32695 3.61462 3.74356 3.76349 3.83903 3.88626 4.04853 4.09909 4.17890 4.30990 4.32105 4.37877 4.45762 4.46563 4.49913 4.53065 4.55576 4.61851 4.62363 4.67710 4.72203 4.79095 4.83333 4.88150 4.92512 4.93837 4.96019 5.00155 5.00445 5.06911 5.13475 5.13846 5.17180 5.20473 5.24621 5.29830 5.35099 5.43233 5.52428 5.59768 5.72248 5.92907 6.15383 6.25040 6.73254 6.95003 7.44326 7.60818 8.04579 9.04400 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.008431 B = 0.004365 C = 0.003274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3320.359019 B = 6412.549608 C = 8550.708348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.420 6.420 3 C 0.072 3.928 4 C -0.117 4.117 5 C 0.203 3.797 6 N -0.717 5.717 7 C 0.511 3.489 8 O -0.561 6.561 9 C -0.132 4.132 10 C -0.072 4.072 11 C -0.115 4.115 12 C -0.127 4.127 13 C -0.123 4.123 14 C -0.117 4.117 15 C -0.131 4.131 16 C 0.122 3.878 17 N -0.615 5.615 18 C -0.256 4.256 19 H 0.037 0.963 20 C -0.032 4.032 21 N -0.963 5.963 22 Si 0.959 3.041 23 H -0.258 1.258 24 H -0.314 1.314 25 H -0.259 1.259 26 C 0.159 3.841 27 C -0.133 4.133 28 H 0.095 0.905 29 H 0.050 0.950 30 H 0.049 0.951 31 H 0.061 0.939 32 H 0.053 0.947 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.407 0.593 36 H 0.102 0.898 37 H 0.116 0.884 38 H 0.063 0.937 39 H 0.051 0.949 40 H 0.048 0.952 41 H 0.065 0.935 42 H 0.063 0.937 43 H 0.073 0.927 44 H 0.066 0.934 45 H 0.070 0.930 46 H 0.078 0.922 47 H 0.096 0.904 48 H 0.070 0.930 49 H 0.055 0.945 50 H 0.041 0.959 51 H 0.262 0.738 52 H 0.038 0.962 53 H 0.027 0.973 54 H 0.054 0.946 55 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.652 -7.037 -18.134 26.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.339 6.339 3 C -0.004 4.004 4 C -0.155 4.155 5 C 0.117 3.883 6 N -0.370 5.370 7 C 0.299 3.701 8 O -0.440 6.440 9 C -0.171 4.171 10 C -0.091 4.091 11 C -0.152 4.152 12 C -0.165 4.165 13 C -0.160 4.160 14 C -0.154 4.154 15 C -0.170 4.170 16 C -0.003 4.003 17 N -0.340 5.340 18 C -0.386 4.386 19 H 0.054 0.946 20 C -0.227 4.227 21 N -0.608 5.608 22 Si 0.786 3.214 23 H -0.184 1.184 24 H -0.243 1.243 25 H -0.183 1.183 26 C 0.034 3.966 27 C -0.173 4.173 28 H 0.113 0.887 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.079 0.921 32 H 0.071 0.929 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.243 0.757 36 H 0.120 0.880 37 H 0.134 0.866 38 H 0.081 0.919 39 H 0.070 0.930 40 H 0.067 0.933 41 H 0.084 0.916 42 H 0.082 0.918 43 H 0.092 0.908 44 H 0.085 0.915 45 H 0.089 0.911 46 H 0.097 0.903 47 H 0.114 0.886 48 H 0.089 0.911 49 H 0.073 0.927 50 H 0.059 0.941 51 H 0.071 0.929 52 H 0.057 0.943 53 H 0.045 0.955 54 H 0.072 0.928 55 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -17.037 -7.798 -18.189 26.113 hybrid contribution -0.012 1.141 0.633 1.305 sum -17.049 -6.656 -17.556 25.361 Atomic orbital electron populations 1.22914 0.79542 1.03722 1.00828 1.87840 1.21511 1.28991 1.95590 1.22491 0.92987 0.84219 1.00750 1.21744 0.94197 0.96347 1.03253 1.19902 0.92638 0.89630 0.86167 1.46167 1.58059 1.27501 1.05238 1.21150 0.80086 0.84725 0.84116 1.90621 1.39254 1.29535 1.84588 1.21925 1.02940 1.00390 0.91865 1.21465 0.95105 0.99462 0.93040 1.22347 0.96158 1.00484 0.96242 1.22535 0.98601 0.99975 0.95339 1.22355 0.94666 0.99144 0.99844 1.22212 0.97732 1.00052 0.95405 1.22294 1.01534 0.97084 0.96059 1.21451 0.83813 0.95937 0.99086 1.44362 1.01443 1.65224 1.22996 1.18752 0.99489 1.02539 1.17773 0.94571 1.26203 1.01267 0.97827 0.97379 1.69945 1.44057 1.24547 1.22289 0.85753 0.79720 0.76401 0.79521 1.18372 1.24326 1.18292 1.20844 0.96681 0.91482 0.87619 1.22250 0.95146 0.97769 1.02109 0.88662 0.93108 0.93249 0.92076 0.92855 0.91256 0.91157 0.75661 0.88019 0.86601 0.91858 0.93043 0.93325 0.91627 0.91782 0.90790 0.91536 0.91117 0.90290 0.88597 0.91148 0.92695 0.94127 0.92887 0.94288 0.95455 0.92767 0.90232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 11.01 113.37 1.25 1.67 16 2 O -0.42 -10.33 10.70 -148.98 -1.59 -11.93 16 3 C 0.07 1.62 5.49 71.98 0.40 2.02 16 4 C -0.12 -3.17 4.35 30.59 0.13 -3.04 16 5 C 0.20 5.76 0.35 3.63 0.00 5.76 16 6 N -0.72 -17.21 3.22 -422.82 -1.36 -18.58 16 7 C 0.51 12.54 6.86 87.66 0.60 13.14 16 8 O -0.56 -17.55 11.08 -3.02 -0.03 -17.58 16 9 C -0.13 -2.26 4.83 29.85 0.14 -2.12 16 10 C -0.07 -1.33 2.55 -10.07 -0.03 -1.36 16 11 C -0.11 -2.53 5.40 31.69 0.17 -2.36 16 12 C -0.13 -2.24 6.91 31.91 0.22 -2.02 16 13 C -0.12 -1.73 6.83 31.67 0.22 -1.51 16 14 C -0.12 -1.58 6.46 31.32 0.20 -1.38 16 15 C -0.13 -3.86 4.73 30.67 0.15 -3.72 16 16 C 0.12 4.60 3.92 86.36 0.34 4.94 16 17 N -0.62 -28.18 2.67 -699.10 -1.86 -30.05 16 18 C -0.26 -14.56 10.00 84.03 0.84 -13.72 16 19 H 0.04 2.33 8.06 -2.91 -0.02 2.31 16 20 C -0.03 -1.84 5.30 84.86 0.45 -1.39 16 21 N -0.96 -60.42 13.97 21.65 0.30 -60.12 16 22 Si 0.96 44.41 24.36 68.60 1.67 46.08 16 23 H -0.26 -10.75 6.43 99.48 0.64 -10.11 16 24 H -0.31 -15.06 7.11 99.48 0.71 -14.35 16 25 H -0.26 -11.25 6.91 99.48 0.69 -10.56 16 26 C 0.16 6.44 6.26 86.36 0.54 6.98 16 27 C -0.13 -4.63 4.66 30.67 0.14 -4.49 16 28 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.06 1.23 6.40 -2.39 -0.02 1.22 16 32 H 0.05 1.11 7.43 -2.39 -0.02 1.09 16 33 H 0.07 2.17 6.49 -2.39 -0.02 2.16 16 34 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 35 H 0.41 8.22 7.27 -92.70 -0.67 7.55 16 36 H 0.10 1.60 8.02 -2.38 -0.02 1.58 16 37 H 0.12 1.37 8.14 -2.38 -0.02 1.35 16 38 H 0.06 1.37 7.95 -2.39 -0.02 1.36 16 39 H 0.05 1.22 7.77 -2.39 -0.02 1.20 16 40 H 0.05 1.31 7.63 -2.39 -0.02 1.29 16 41 H 0.06 1.12 8.14 -2.38 -0.02 1.10 16 42 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 43 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 44 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 45 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 46 H 0.08 0.86 7.67 -2.38 -0.02 0.84 16 47 H 0.10 2.18 6.43 -2.39 -0.02 2.17 16 48 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 49 H 0.05 2.32 4.94 -2.39 -0.01 2.30 16 50 H 0.04 1.38 5.87 -2.39 -0.01 1.37 16 51 H 0.26 15.58 8.31 -92.71 -0.77 14.81 16 52 H 0.04 1.71 7.93 -2.39 -0.02 1.69 16 53 H 0.03 1.07 7.74 -2.39 -0.02 1.06 16 54 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 55 H 0.08 2.85 6.03 -2.39 -0.01 2.84 16 Total: -1.00 -70.99 401.99 2.98 -68.01 By element: Atomic # 1 Polarization: 26.66 SS G_CDS: 0.10 Total: 26.76 kcal Atomic # 6 Polarization: -8.36 SS G_CDS: 5.76 Total: -2.59 kcal Atomic # 7 Polarization: -105.82 SS G_CDS: -2.92 Total: -108.74 kcal Atomic # 8 Polarization: -27.88 SS G_CDS: -1.63 Total: -29.51 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 1.67 Total: 46.08 kcal Total: -70.99 2.98 -68.01 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001150918163.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.161 kcal (2) G-P(sol) polarization free energy of solvation -70.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds