Wall clock time and date at job start Tue Mar 31 2020 22:44:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42897 * 113.99680 * 2 1 4 4 C 1.52999 * 109.47228 * 180.02562 * 3 2 1 5 5 C 1.53002 * 109.47468 * 183.09612 * 4 3 2 6 6 N 1.46495 * 109.44525 * 303.92265 * 5 4 3 7 7 C 1.34775 * 120.00523 * 296.89908 * 6 5 4 8 8 O 1.21289 * 119.99676 * 4.90994 * 7 6 5 9 9 C 1.50697 * 120.00581 * 184.90609 * 7 6 5 10 10 C 1.52996 * 109.47170 * 180.02562 * 9 7 6 11 11 C 1.52999 * 109.46832 * 180.02562 * 10 9 7 12 12 C 1.53005 * 109.46980 * 180.02562 * 11 10 9 13 13 C 1.52997 * 117.49723 * 243.74509 * 12 11 10 14 14 C 1.52999 * 117.49825 * 175.08707 * 12 11 10 15 15 C 1.53044 * 109.45973 * 183.95743 * 5 4 3 16 16 C 1.53187 * 109.30894 * 178.61406 * 15 5 4 17 17 N 1.46923 * 108.77751 * 54.63864 * 16 15 5 18 18 C 1.36938 * 120.63108 * 126.37055 * 17 16 15 19 19 H 1.07995 * 119.99869 * 326.21479 * 18 17 16 20 20 C 1.38810 * 119.99705 * 146.49633 * 18 17 16 21 21 N 1.31625 * 119.99611 * 168.04415 * 20 18 17 22 22 Si 1.86802 * 120.00561 * 348.04083 * 20 18 17 23 23 H 1.48497 * 109.46854 * 85.68780 * 22 20 18 24 24 H 1.48494 * 109.47550 * 205.69586 * 22 20 18 25 25 H 1.48505 * 109.46526 * 325.69668 * 22 20 18 26 26 C 1.46926 * 118.73599 * 306.63530 * 17 16 15 27 27 C 1.52768 * 109.00544 * 53.31623 * 26 17 16 28 28 H 1.08996 * 109.46874 * 299.99673 * 1 2 3 29 29 H 1.08999 * 109.46965 * 59.99754 * 1 2 3 30 30 H 1.08997 * 109.46810 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47321 * 60.00377 * 3 2 1 32 32 H 1.09000 * 109.47832 * 300.00244 * 3 2 1 33 33 H 1.08995 * 109.47414 * 63.08972 * 4 3 2 34 34 H 1.09007 * 109.47012 * 303.09588 * 4 3 2 35 35 H 0.97005 * 119.99905 * 116.90296 * 6 5 4 36 36 H 1.08994 * 109.46934 * 300.00735 * 9 7 6 37 37 H 1.09009 * 109.46524 * 60.00083 * 9 7 6 38 38 H 1.08998 * 109.47053 * 299.99767 * 10 9 7 39 39 H 1.08996 * 109.47126 * 60.00321 * 10 9 7 40 40 H 1.09004 * 109.47403 * 300.00131 * 11 10 9 41 41 H 1.09006 * 109.47300 * 60.00223 * 11 10 9 42 42 H 1.08990 * 115.55158 * 29.41774 * 12 11 10 43 43 H 1.09004 * 117.50547 * 0.02562 * 13 12 11 44 44 H 1.09000 * 117.50198 * 145.02277 * 13 12 11 45 45 H 1.09001 * 117.50252 * 214.97880 * 14 12 11 46 46 H 1.09003 * 117.50039 * 359.97438 * 14 12 11 47 47 H 1.09000 * 109.49306 * 58.66099 * 15 5 4 48 48 H 1.09002 * 109.49747 * 298.56634 * 15 5 4 49 49 H 1.09000 * 109.58623 * 294.84144 * 16 15 5 50 50 H 1.09006 * 109.58631 * 174.42754 * 16 15 5 51 51 H 0.97007 * 119.99969 * 179.97438 * 21 20 18 52 52 H 1.08999 * 109.58819 * 173.14357 * 26 17 16 53 53 H 1.08996 * 109.59306 * 293.57432 * 26 17 16 54 54 H 1.09003 * 109.56291 * 185.54937 * 27 26 17 55 55 H 1.08999 * 109.36115 * 65.49645 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 6 4.1576 2.5804 0.0773 6 7 3.6560 3.4004 -1.0283 7 6 3.9250 3.0517 -2.3020 8 8 4.5053 2.0128 -2.5367 9 6 3.5048 3.9524 -3.4347 10 6 3.9268 3.3281 -4.7662 11 6 3.5007 4.2430 -5.9162 12 6 3.9221 3.6184 -7.2478 13 6 4.9489 4.3775 -8.0906 14 6 3.4837 4.3273 -8.5308 15 6 5.6805 2.4661 -0.0228 16 6 6.2976 3.8674 0.0208 17 7 5.8223 4.5562 1.2284 18 6 6.7109 5.1060 2.1134 19 1 7.6686 4.6354 2.2797 20 6 6.3783 6.2651 2.8010 21 7 7.1176 6.6641 3.8143 22 14 4.8817 7.2585 2.2885 23 1 3.6715 6.7067 2.9488 24 1 5.0650 8.6751 2.6946 25 1 4.7190 7.1833 0.8143 26 6 4.3756 4.6387 1.4713 27 6 3.7797 3.2334 1.4088 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6886 1.8464 0.8900 32 1 1.6886 1.8465 -0.8899 33 1 3.8606 0.6926 -0.9172 34 1 3.8537 0.5965 0.8601 35 1 3.1303 4.1944 -0.8435 36 1 2.4220 4.0756 -3.4184 37 1 3.9829 4.9255 -3.3215 38 1 5.0096 3.2047 -4.7827 39 1 3.4484 2.3553 -4.8792 40 1 2.4179 4.3669 -5.8999 41 1 3.9795 5.2158 -5.8031 42 1 3.9642 2.5294 -7.2638 43 1 5.3246 5.3218 -7.6963 44 1 5.6663 3.7879 -8.6615 45 1 3.2377 3.7048 -9.3910 46 1 2.8947 5.2385 -8.4262 47 1 5.9478 1.9797 -0.9609 48 1 6.0567 1.8766 0.8134 49 1 5.9939 4.4281 -0.8633 50 1 7.3843 3.7874 0.0495 51 1 6.8854 7.4743 4.2947 52 1 4.1944 5.0672 2.4570 53 1 3.9118 5.2635 0.7081 54 1 2.6943 3.2932 1.4896 55 1 4.1739 2.6368 2.2314 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001151274750.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:44:09 Heat of formation + Delta-G solvation = -69.792962 kcal Electronic energy + Delta-G solvation = -31328.851609 eV Core-core repulsion = 27366.007473 eV Total energy + Delta-G solvation = -3962.844136 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.71228 -39.34108 -38.68423 -38.46172 -36.32942 -34.67891 -33.87669 -32.99277 -32.08509 -30.79148 -28.87231 -27.63219 -26.32981 -24.60262 -24.30627 -23.62958 -23.17005 -22.09638 -21.39220 -21.26248 -20.20350 -18.88229 -18.02385 -17.66351 -17.17341 -16.91082 -16.73323 -16.42223 -16.24676 -15.87565 -15.65991 -15.40767 -15.31439 -15.22997 -14.84803 -14.73592 -14.30598 -14.20044 -13.98544 -13.65136 -13.38824 -13.18641 -13.12471 -12.93736 -12.69558 -12.60984 -12.46725 -12.35531 -12.30952 -12.20560 -12.05537 -12.01046 -11.91967 -11.70873 -11.62222 -11.40539 -11.32094 -11.06900 -10.73958 -10.70015 -10.59650 -10.33943 -9.93163 -8.81392 -8.14003 -5.56928 1.31213 1.43708 1.54190 1.79513 2.29543 2.43840 2.80324 2.94705 3.12818 3.31768 3.61304 3.73196 3.85966 3.91706 4.05330 4.06266 4.09748 4.16141 4.23133 4.27869 4.30963 4.33745 4.44503 4.46668 4.50205 4.52857 4.55612 4.61946 4.67896 4.78624 4.81177 4.82351 4.82978 4.91176 4.91658 4.94163 4.97114 5.00519 5.05343 5.10578 5.12183 5.18844 5.26129 5.27408 5.29820 5.34897 5.39322 5.52614 5.70561 5.92281 6.15487 6.25260 6.71659 6.94340 7.41683 7.61539 8.04023 9.06099 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.007984 B = 0.003671 C = 0.002789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3506.335061 B = 7625.954232 C =10037.555042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.420 6.420 3 C 0.072 3.928 4 C -0.118 4.118 5 C 0.203 3.797 6 N -0.715 5.715 7 C 0.511 3.489 8 O -0.569 6.569 9 C -0.137 4.137 10 C -0.092 4.092 11 C -0.083 4.083 12 C -0.162 4.162 13 C -0.190 4.190 14 C -0.177 4.177 15 C -0.134 4.134 16 C 0.158 3.842 17 N -0.616 5.616 18 C -0.253 4.253 19 H 0.038 0.962 20 C -0.039 4.039 21 N -0.966 5.966 22 Si 0.964 3.036 23 H -0.262 1.262 24 H -0.317 1.317 25 H -0.253 1.253 26 C 0.118 3.882 27 C -0.131 4.131 28 H 0.051 0.949 29 H 0.048 0.952 30 H 0.095 0.905 31 H 0.061 0.939 32 H 0.052 0.948 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.409 0.591 36 H 0.117 0.883 37 H 0.103 0.897 38 H 0.049 0.951 39 H 0.058 0.942 40 H 0.078 0.922 41 H 0.067 0.933 42 H 0.097 0.903 43 H 0.094 0.906 44 H 0.092 0.908 45 H 0.098 0.902 46 H 0.100 0.900 47 H 0.076 0.924 48 H 0.056 0.944 49 H 0.031 0.969 50 H 0.041 0.959 51 H 0.262 0.738 52 H 0.055 0.945 53 H 0.045 0.955 54 H 0.096 0.904 55 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.350 -6.260 -19.086 26.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.339 6.339 3 C -0.004 4.004 4 C -0.157 4.157 5 C 0.116 3.884 6 N -0.368 5.368 7 C 0.300 3.700 8 O -0.448 6.448 9 C -0.177 4.177 10 C -0.130 4.130 11 C -0.120 4.120 12 C -0.180 4.180 13 C -0.227 4.227 14 C -0.214 4.214 15 C -0.173 4.173 16 C 0.033 3.967 17 N -0.341 5.341 18 C -0.382 4.382 19 H 0.056 0.944 20 C -0.233 4.233 21 N -0.612 5.612 22 Si 0.792 3.208 23 H -0.188 1.188 24 H -0.246 1.246 25 H -0.177 1.177 26 C -0.007 4.007 27 C -0.170 4.170 28 H 0.069 0.931 29 H 0.067 0.933 30 H 0.113 0.887 31 H 0.079 0.921 32 H 0.070 0.930 33 H 0.089 0.911 34 H 0.087 0.913 35 H 0.245 0.755 36 H 0.136 0.864 37 H 0.121 0.879 38 H 0.068 0.932 39 H 0.077 0.923 40 H 0.097 0.903 41 H 0.086 0.914 42 H 0.116 0.884 43 H 0.113 0.887 44 H 0.111 0.889 45 H 0.116 0.884 46 H 0.119 0.881 47 H 0.095 0.905 48 H 0.075 0.925 49 H 0.049 0.951 50 H 0.059 0.941 51 H 0.070 0.930 52 H 0.073 0.927 53 H 0.062 0.938 54 H 0.115 0.885 55 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -16.780 -7.048 -19.145 26.415 hybrid contribution -0.082 1.051 0.550 1.189 sum -16.862 -5.997 -18.595 25.808 Atomic orbital electron populations 1.22912 0.79563 1.03722 1.00809 1.87840 1.21498 1.29014 1.95585 1.22490 0.93055 0.84213 1.00674 1.21785 0.94178 0.96422 1.03294 1.19910 0.92725 0.89572 0.86167 1.46140 1.55587 1.29840 1.05184 1.21185 0.78041 0.86515 0.84279 1.90633 1.42951 1.26520 1.84736 1.21745 1.04666 0.99193 0.92073 1.21193 1.00920 0.98713 0.92224 1.21152 1.01588 0.98078 0.91167 1.22374 1.04585 0.98696 0.92368 1.23112 0.92777 1.02476 1.04310 1.23044 0.97338 1.03034 0.97950 1.22226 0.95099 0.97943 1.02067 1.20860 0.96731 0.91397 0.87685 1.44356 1.01380 1.65741 1.22620 1.18775 0.98734 1.04146 1.16592 0.94407 1.26204 1.01722 0.97838 0.97522 1.69942 1.43032 1.25737 1.22484 0.85710 0.79449 0.75998 0.79654 1.18760 1.24608 1.17678 1.21423 0.83907 0.96096 0.99266 1.22229 1.01560 0.97206 0.96039 0.93070 0.93320 0.88653 0.92054 0.92954 0.91090 0.91274 0.75489 0.86443 0.87864 0.93218 0.92308 0.90317 0.91430 0.88434 0.88709 0.88912 0.88367 0.88126 0.90536 0.92505 0.95122 0.94085 0.92956 0.92657 0.93776 0.88540 0.91150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 11.01 113.37 1.25 1.68 16 2 O -0.42 -10.50 10.70 -148.98 -1.59 -12.09 16 3 C 0.07 1.65 5.49 71.98 0.40 2.04 16 4 C -0.12 -3.24 4.40 30.59 0.13 -3.10 16 5 C 0.20 5.73 0.35 3.63 0.00 5.73 16 6 N -0.71 -16.95 3.19 -422.80 -1.35 -18.30 16 7 C 0.51 12.57 7.14 87.66 0.63 13.20 16 8 O -0.57 -18.12 12.27 -3.06 -0.04 -18.15 16 9 C -0.14 -2.32 5.70 29.85 0.17 -2.15 16 10 C -0.09 -1.70 4.46 30.59 0.14 -1.56 16 11 C -0.08 -1.18 5.49 30.60 0.17 -1.01 16 12 C -0.16 -2.47 5.73 -10.79 -0.06 -2.53 16 13 C -0.19 -2.79 10.18 30.62 0.31 -2.48 16 14 C -0.18 -2.27 10.25 30.62 0.31 -1.96 16 15 C -0.13 -4.60 4.62 30.67 0.14 -4.46 16 16 C 0.16 6.30 6.26 86.36 0.54 6.84 16 17 N -0.62 -27.93 2.72 -699.93 -1.91 -29.83 16 18 C -0.25 -14.30 10.04 84.03 0.84 -13.45 16 19 H 0.04 2.42 8.06 -2.91 -0.02 2.40 16 20 C -0.04 -2.22 5.34 84.86 0.45 -1.77 16 21 N -0.97 -60.63 13.97 21.65 0.30 -60.33 16 22 Si 0.96 44.23 24.26 68.60 1.66 45.89 16 23 H -0.26 -10.87 6.44 99.48 0.64 -10.23 16 24 H -0.32 -15.10 7.11 99.48 0.71 -14.39 16 25 H -0.25 -10.67 6.64 99.48 0.66 -10.01 16 26 C 0.12 4.40 3.86 86.22 0.33 4.73 16 27 C -0.13 -3.86 4.70 30.53 0.14 -3.71 16 28 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.06 1.25 6.36 -2.39 -0.02 1.23 16 32 H 0.05 1.11 7.61 -2.39 -0.02 1.09 16 33 H 0.07 2.26 6.34 -2.39 -0.02 2.25 16 34 H 0.07 1.96 8.14 -2.38 -0.02 1.94 16 35 H 0.41 7.91 7.38 -92.70 -0.68 7.23 16 36 H 0.12 1.33 8.14 -2.39 -0.02 1.31 16 37 H 0.10 1.59 8.14 -2.38 -0.02 1.57 16 38 H 0.05 1.13 8.10 -2.39 -0.02 1.11 16 39 H 0.06 1.20 8.10 -2.39 -0.02 1.18 16 40 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 41 H 0.07 0.93 7.88 -2.38 -0.02 0.92 16 42 H 0.10 1.60 8.07 -2.39 -0.02 1.58 16 43 H 0.09 1.36 8.03 -2.38 -0.02 1.35 16 44 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 45 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 46 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 47 H 0.08 2.71 6.15 -2.39 -0.01 2.70 16 48 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 49 H 0.03 1.17 7.64 -2.39 -0.02 1.15 16 50 H 0.04 1.76 7.93 -2.38 -0.02 1.74 16 51 H 0.26 15.56 8.31 -92.70 -0.77 14.79 16 52 H 0.06 2.31 4.59 -2.39 -0.01 2.30 16 53 H 0.04 1.48 5.78 -2.39 -0.01 1.46 16 54 H 0.10 2.18 6.40 -2.39 -0.02 2.16 16 55 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 Total: -1.00 -71.60 412.77 3.04 -68.56 By element: Atomic # 1 Polarization: 28.15 SS G_CDS: 0.06 Total: 28.21 kcal Atomic # 6 Polarization: -9.86 SS G_CDS: 5.90 Total: -3.96 kcal Atomic # 7 Polarization: -105.51 SS G_CDS: -2.95 Total: -108.46 kcal Atomic # 8 Polarization: -28.61 SS G_CDS: -1.63 Total: -30.25 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 1.66 Total: 45.89 kcal Total: -71.60 3.04 -68.56 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001151274750.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.229 kcal (2) G-P(sol) polarization free energy of solvation -71.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds