Wall clock time and date at job start Tue Mar 31 2020 22:20:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36940 * 120.00211 * 2 1 4 4 H 1.07994 * 120.00070 * 205.72050 * 3 2 1 5 5 C 1.38811 * 119.99876 * 25.72474 * 3 2 1 6 6 N 1.31620 * 119.99917 * 9.03501 * 5 3 2 7 7 Si 1.86803 * 119.99989 * 189.03526 * 5 3 2 8 8 H 1.48504 * 109.46691 * 64.99975 * 7 5 3 9 9 H 1.48492 * 109.47052 * 184.99752 * 7 5 3 10 10 H 1.48492 * 109.47083 * 305.00053 * 7 5 3 11 11 C 1.46504 * 120.00040 * 179.97438 * 2 1 3 12 12 C 1.52999 * 109.47219 * 265.94996 * 11 2 1 13 13 H 1.09004 * 109.69895 * 298.76556 * 12 11 2 14 14 C 1.53617 * 109.66995 * 59.35656 * 12 11 2 15 15 C 1.53038 * 109.24269 * 174.55028 * 14 12 11 16 16 C 1.53036 * 109.53823 * 298.50943 * 15 14 12 17 17 C 1.53198 * 109.31114 * 61.36676 * 16 15 14 18 18 N 1.46923 * 108.77684 * 305.36508 * 17 16 15 19 19 C 1.34776 * 120.62922 * 233.58544 * 18 17 16 20 20 O 1.21284 * 119.99964 * 185.04906 * 19 18 17 21 21 C 1.50699 * 120.00168 * 5.05022 * 19 18 17 22 22 O 1.42900 * 109.47018 * 175.17464 * 21 19 18 23 23 C 1.42897 * 114.00019 * 184.90654 * 22 21 19 24 24 C 1.53001 * 109.47446 * 184.90752 * 23 22 21 25 25 C 1.54888 * 110.91197 * 73.41022 * 24 23 22 26 26 C 1.54265 * 104.19559 * 156.33192 * 25 24 23 27 27 C 1.53870 * 106.59887 * 336.38761 * 26 25 24 28 28 C 1.54274 * 106.59916 * 0.02562 * 27 26 25 29 29 H 1.08994 * 109.47159 * 274.28834 * 1 2 3 30 30 H 1.09002 * 109.46863 * 34.28551 * 1 2 3 31 31 H 1.08996 * 109.47048 * 154.28352 * 1 2 3 32 32 H 0.97001 * 119.99660 * 179.97438 * 6 5 3 33 33 H 1.09000 * 109.47116 * 145.94438 * 11 2 1 34 34 H 1.09006 * 109.46503 * 25.94473 * 11 2 1 35 35 H 1.09003 * 109.63413 * 54.56114 * 14 12 11 36 36 H 1.08996 * 109.46209 * 294.43649 * 14 12 11 37 37 H 1.09000 * 109.45972 * 178.49273 * 15 14 12 38 38 H 1.08994 * 109.45875 * 58.53586 * 15 14 12 39 39 H 1.08994 * 109.50429 * 301.41647 * 16 15 14 40 40 H 1.09005 * 109.49916 * 181.31785 * 16 15 14 41 41 H 1.08998 * 109.58739 * 185.57258 * 17 16 15 42 42 H 1.08999 * 109.58420 * 65.15122 * 17 16 15 43 43 H 1.09003 * 109.46911 * 55.17531 * 21 19 18 44 44 H 1.09000 * 109.46996 * 295.17635 * 21 19 18 45 45 H 1.09004 * 109.47023 * 64.90340 * 23 22 21 46 46 H 1.09000 * 109.47345 * 304.90997 * 23 22 21 47 47 H 1.09000 * 110.66962 * 310.06209 * 24 23 22 48 48 H 1.09003 * 110.49020 * 37.64980 * 25 24 23 49 49 H 1.09002 * 110.48732 * 275.01078 * 25 24 23 50 50 H 1.08999 * 110.03283 * 217.10041 * 26 25 24 51 51 H 1.08999 * 110.03110 * 95.67685 * 26 25 24 52 52 H 1.08999 * 110.03205 * 119.28398 * 27 26 25 53 53 H 1.08998 * 110.03788 * 240.66564 * 27 26 25 54 54 H 1.08995 * 110.48528 * 142.28744 * 28 27 26 55 55 H 1.08993 * 110.48310 * 264.80099 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1859 0.0000 4 1 3.1495 1.2322 -0.4059 5 6 1.5589 2.3285 0.5218 6 7 0.4195 2.2406 1.1747 7 14 2.3809 3.9908 0.2973 8 1 2.4048 4.3403 -1.1459 9 1 1.6200 5.0242 1.0443 10 1 3.7714 3.9293 0.8148 11 6 2.1975 -1.2688 0.0006 12 6 2.5408 -1.6589 1.4396 13 1 3.1776 -0.8948 1.8855 14 6 1.2492 -1.8006 2.2590 15 6 1.5929 -2.3219 3.6562 16 6 2.2441 -3.7020 3.5417 17 6 3.5421 -3.5845 2.7367 18 7 3.2423 -2.9498 1.4460 19 6 3.6087 -3.5380 0.2900 20 8 3.4380 -2.9626 -0.7639 21 6 4.2304 -4.9106 0.3069 22 8 4.4257 -5.3617 -1.0349 23 6 4.9097 -6.7026 -1.1327 24 6 5.1968 -7.0356 -2.5982 25 6 6.4795 -6.3183 -3.0871 26 6 6.9638 -7.1764 -4.2741 27 6 6.3789 -8.5844 -4.0661 28 6 5.5591 -8.5326 -2.7603 29 1 -0.3633 0.0768 1.0247 30 1 -0.3633 0.8491 -0.5789 31 1 -0.3633 -0.9258 -0.4459 32 1 0.0068 3.0390 1.5397 33 1 3.1166 -1.1580 -0.5750 34 1 1.5788 -2.0456 -0.4487 35 1 0.5767 -2.5016 1.7645 36 1 0.7637 -0.8283 2.3427 37 1 0.6817 -2.3984 4.2496 38 1 2.2847 -1.6329 4.1408 39 1 1.5624 -4.3851 3.0351 40 1 2.4673 -4.0828 4.5384 41 1 3.9584 -4.5776 2.5676 42 1 4.2589 -2.9743 3.2862 43 1 3.5701 -5.6022 0.8302 44 1 5.1915 -4.8679 0.8194 45 1 4.1577 -7.3896 -0.7446 46 1 5.8264 -6.8013 -0.5514 47 1 4.3449 -6.7746 -3.2261 48 1 7.2310 -6.3003 -2.2978 49 1 6.2480 -5.3058 -3.4178 50 1 8.0528 -7.2219 -4.2822 51 1 6.6003 -6.7558 -5.2117 52 1 5.7316 -8.8471 -4.9028 53 1 7.1840 -9.3134 -3.9741 54 1 4.6562 -9.1362 -2.8525 55 1 6.1609 -8.8742 -1.9183 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001158083085.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:20:10 Heat of formation + Delta-G solvation = -77.269573 kcal Electronic energy + Delta-G solvation = -30971.066294 eV Core-core repulsion = 27007.897948 eV Total energy + Delta-G solvation = -3963.168346 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.53258 -39.68135 -38.57613 -37.64997 -37.29017 -34.02232 -33.69914 -31.94659 -31.37673 -29.56027 -29.04043 -28.08620 -27.45786 -25.56539 -25.12676 -23.86732 -22.33375 -21.80326 -21.10536 -21.02142 -19.90907 -18.84729 -18.02575 -17.56215 -17.40384 -16.82013 -16.59976 -16.50362 -15.98056 -15.79491 -15.49617 -15.34505 -15.14476 -14.87445 -14.68246 -14.38044 -14.22410 -14.15406 -14.06731 -13.79450 -13.41047 -13.24260 -12.83145 -12.77777 -12.65176 -12.55315 -12.36328 -12.13840 -12.12740 -12.03564 -11.95239 -11.93342 -11.84638 -11.71806 -11.63682 -11.54386 -11.48878 -11.38719 -11.24397 -10.66916 -10.57888 -10.10073 -9.49254 -8.71097 -7.81314 -5.32734 1.43350 1.46233 1.52890 1.63945 1.79223 2.50550 2.85891 3.30302 3.59119 3.68997 3.75064 3.80000 3.93077 3.94037 3.97172 4.06509 4.16283 4.19044 4.28481 4.36022 4.40488 4.46237 4.50274 4.54617 4.59516 4.62360 4.70379 4.70904 4.75090 4.80490 4.85143 4.86191 4.91683 5.03849 5.04272 5.05810 5.12858 5.14968 5.21395 5.24228 5.26385 5.31313 5.34425 5.37116 5.47597 5.49433 5.52652 5.61772 5.70874 5.77558 6.18285 6.34732 6.57135 7.15919 7.29239 7.88623 8.34940 9.20621 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.013159 B = 0.002640 C = 0.002328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2127.376807 B =10602.884155 C =12024.103475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.180 3.820 2 N -0.616 5.616 3 C -0.265 4.265 4 H 0.054 0.946 5 C -0.044 4.044 6 N -0.931 5.931 7 Si 0.967 3.033 8 H -0.284 1.284 9 H -0.287 1.287 10 H -0.276 1.276 11 C 0.176 3.824 12 C 0.140 3.860 13 H 0.044 0.956 14 C -0.111 4.111 15 C -0.116 4.116 16 C -0.124 4.124 17 C 0.098 3.902 18 N -0.605 5.605 19 C 0.496 3.504 20 O -0.564 6.564 21 C 0.055 3.945 22 O -0.398 6.398 23 C 0.066 3.934 24 C -0.096 4.096 25 C -0.119 4.119 26 C -0.128 4.128 27 C -0.123 4.123 28 C -0.109 4.109 29 H 0.020 0.980 30 H 0.012 0.988 31 H 0.012 0.988 32 H 0.249 0.751 33 H 0.045 0.955 34 H 0.033 0.967 35 H 0.048 0.952 36 H 0.052 0.948 37 H 0.070 0.930 38 H 0.056 0.944 39 H 0.068 0.932 40 H 0.107 0.893 41 H 0.119 0.881 42 H 0.077 0.923 43 H 0.109 0.891 44 H 0.107 0.893 45 H 0.067 0.933 46 H 0.070 0.930 47 H 0.063 0.937 48 H 0.071 0.929 49 H 0.042 0.958 50 H 0.071 0.929 51 H 0.055 0.945 52 H 0.063 0.937 53 H 0.077 0.923 54 H 0.074 0.926 55 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.222 -26.479 3.242 28.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.340 5.340 3 C -0.395 4.395 4 H 0.072 0.928 5 C -0.240 4.240 6 N -0.577 5.577 7 Si 0.795 3.205 8 H -0.211 1.211 9 H -0.213 1.213 10 H -0.201 1.201 11 C 0.050 3.950 12 C 0.034 3.966 13 H 0.062 0.938 14 C -0.150 4.150 15 C -0.154 4.154 16 C -0.162 4.162 17 C -0.023 4.023 18 N -0.340 5.340 19 C 0.285 3.715 20 O -0.442 6.442 21 C -0.024 4.024 22 O -0.317 6.317 23 C -0.010 4.010 24 C -0.115 4.115 25 C -0.157 4.157 26 C -0.165 4.165 27 C -0.161 4.161 28 C -0.147 4.147 29 H 0.038 0.962 30 H 0.031 0.969 31 H 0.030 0.970 32 H 0.059 0.941 33 H 0.064 0.936 34 H 0.051 0.949 35 H 0.067 0.933 36 H 0.071 0.929 37 H 0.089 0.911 38 H 0.075 0.925 39 H 0.087 0.913 40 H 0.126 0.874 41 H 0.137 0.863 42 H 0.095 0.905 43 H 0.126 0.874 44 H 0.125 0.875 45 H 0.085 0.915 46 H 0.089 0.911 47 H 0.082 0.918 48 H 0.090 0.910 49 H 0.061 0.939 50 H 0.089 0.911 51 H 0.074 0.926 52 H 0.082 0.918 53 H 0.096 0.904 54 H 0.093 0.907 55 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 11.001 -25.965 2.571 28.316 hybrid contribution -0.048 1.653 -0.127 1.658 sum 10.952 -24.312 2.443 26.777 Atomic orbital electron populations 1.20585 0.83030 0.94895 0.97985 1.44359 1.02032 1.01764 1.85895 1.19323 0.99663 0.87624 1.32915 0.92785 1.25777 0.98506 1.01622 0.98055 1.70173 1.19707 1.28120 1.39691 0.85356 0.78001 0.79724 0.77428 1.21070 1.21319 1.20121 1.21297 0.95237 0.85613 0.92843 1.21923 0.92698 0.82919 0.99017 0.93751 1.21810 0.96045 1.00676 0.96447 1.21513 1.01159 0.97633 0.95102 1.21897 0.96377 0.96192 1.01732 1.22141 0.98068 0.99540 0.82570 1.48417 1.57197 1.21554 1.06826 1.21137 0.78468 0.88489 0.83375 1.90778 1.55473 1.64988 1.32973 1.22326 1.02174 0.92005 0.85928 1.88015 1.87125 1.31336 1.25252 1.22767 0.99054 0.81944 0.97243 1.22134 0.97950 0.96647 0.94764 1.22381 0.96775 0.98189 0.98328 1.22163 1.00883 0.95622 0.97853 1.22127 0.99653 0.96643 0.97644 1.22315 1.00424 0.93452 0.98467 0.96204 0.96878 0.96976 0.94138 0.93646 0.94881 0.93289 0.92948 0.91100 0.92525 0.91346 0.87445 0.86332 0.90488 0.87358 0.87533 0.91501 0.91148 0.91848 0.91039 0.93858 0.91057 0.92629 0.91806 0.90413 0.90694 0.89934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.75 8.09 127.77 1.03 10.79 16 2 N -0.62 -34.53 2.57 -726.93 -1.87 -36.40 16 3 C -0.26 -15.87 9.65 84.03 0.81 -15.06 16 4 H 0.05 3.28 7.84 -2.91 -0.02 3.25 16 5 C -0.04 -2.58 5.17 84.86 0.44 -2.15 16 6 N -0.93 -56.20 10.67 21.65 0.23 -55.97 16 7 Si 0.97 47.31 29.56 68.60 2.03 49.34 16 8 H -0.28 -13.77 7.11 99.48 0.71 -13.07 16 9 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 10 H -0.28 -13.03 7.11 99.48 0.71 -12.33 16 11 C 0.18 8.75 3.65 86.38 0.31 9.06 16 12 C 0.14 5.72 3.21 45.12 0.14 5.86 16 13 H 0.04 2.04 8.14 -2.38 -0.02 2.02 16 14 C -0.11 -4.18 4.65 30.81 0.14 -4.04 16 15 C -0.12 -3.11 5.88 30.62 0.18 -2.93 16 16 C -0.12 -2.22 6.08 30.67 0.19 -2.03 16 17 C 0.10 1.83 6.35 86.37 0.55 2.37 16 18 N -0.60 -18.56 2.97 -794.22 -2.36 -20.92 16 19 C 0.50 16.39 7.62 87.66 0.67 17.06 16 20 O -0.56 -25.27 12.04 15.95 0.19 -25.08 16 21 C 0.05 1.16 4.77 71.24 0.34 1.50 16 22 O -0.40 -10.47 9.85 -129.99 -1.28 -11.75 16 23 C 0.07 1.10 5.39 71.98 0.39 1.49 16 24 C -0.10 -1.70 3.14 -9.51 -0.03 -1.73 16 25 C -0.12 -2.24 6.25 31.67 0.20 -2.04 16 26 C -0.13 -1.93 6.80 31.32 0.21 -1.72 16 27 C -0.12 -1.47 6.80 31.32 0.21 -1.26 16 28 C -0.11 -1.28 6.27 31.66 0.20 -1.08 16 29 H 0.02 1.11 6.00 -2.39 -0.01 1.10 16 30 H 0.01 0.73 7.36 -2.39 -0.02 0.72 16 31 H 0.01 0.58 7.81 -2.39 -0.02 0.56 16 32 H 0.25 14.57 8.31 -92.71 -0.77 13.80 16 33 H 0.05 2.50 6.17 -2.39 -0.01 2.49 16 34 H 0.03 1.68 6.90 -2.38 -0.02 1.66 16 35 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 36 H 0.05 2.44 6.16 -2.39 -0.01 2.43 16 37 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 38 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 39 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 40 H 0.11 1.22 8.14 -2.38 -0.02 1.20 16 41 H 0.12 1.23 5.92 -2.39 -0.01 1.21 16 42 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 43 H 0.11 1.52 7.67 -2.39 -0.02 1.50 16 44 H 0.11 1.56 7.96 -2.39 -0.02 1.54 16 45 H 0.07 0.87 8.14 -2.38 -0.02 0.85 16 46 H 0.07 0.87 7.95 -2.39 -0.02 0.85 16 47 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 48 H 0.07 1.21 7.92 -2.39 -0.02 1.19 16 49 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 50 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 51 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 52 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 53 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 54 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 55 H 0.08 0.73 8.05 -2.39 -0.02 0.71 16 Total: -1.00 -77.83 412.91 3.77 -74.06 By element: Atomic # 1 Polarization: 11.81 SS G_CDS: 0.83 Total: 12.64 kcal Atomic # 6 Polarization: 8.09 SS G_CDS: 5.99 Total: 14.08 kcal Atomic # 7 Polarization: -109.29 SS G_CDS: -3.99 Total: -113.29 kcal Atomic # 8 Polarization: -35.74 SS G_CDS: -1.09 Total: -36.83 kcal Atomic # 14 Polarization: 47.31 SS G_CDS: 2.03 Total: 49.34 kcal Total: -77.83 3.77 -74.06 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158083085.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.209 kcal (2) G-P(sol) polarization free energy of solvation -77.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds