Wall clock time and date at job start Tue Mar 31 2020 22:19:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42900 * 113.99647 * 2 1 4 4 C 1.53006 * 109.46962 * 269.99455 * 3 2 1 5 5 C 1.52994 * 109.46845 * 180.02562 * 4 3 2 6 6 C 1.53004 * 109.47403 * 60.00366 * 5 4 3 7 7 C 1.50698 * 109.47245 * 179.97438 * 6 5 4 8 8 O 1.21278 * 119.99560 * 98.49747 * 7 6 5 9 9 N 1.34772 * 120.00383 * 278.49691 * 7 6 5 10 10 C 1.46925 * 120.62944 * 6.42768 * 9 7 6 11 11 C 1.53187 * 108.77826 * 233.58635 * 10 9 7 12 12 C 1.53039 * 109.31494 * 305.36584 * 11 10 9 13 13 C 1.53048 * 109.53488 * 61.36409 * 12 11 10 14 14 C 1.46927 * 120.63022 * 186.14967 * 9 7 6 15 15 H 1.08997 * 109.58692 * 246.20039 * 14 9 7 16 16 C 1.52990 * 109.58621 * 6.62702 * 14 9 7 17 17 N 1.46499 * 109.47268 * 180.13652 * 16 14 9 18 18 C 1.46503 * 120.00026 * 264.58641 * 17 16 14 19 19 C 1.36945 * 120.00094 * 84.58165 * 17 16 14 20 20 H 1.07995 * 119.99492 * 28.07518 * 19 17 16 21 21 C 1.38813 * 120.00063 * 208.07994 * 19 17 16 22 22 N 1.31623 * 120.00117 * 8.01962 * 21 19 17 23 23 Si 1.86796 * 119.99940 * 188.02370 * 21 19 17 24 24 H 1.48502 * 109.46924 * 4.99901 * 23 21 19 25 25 H 1.48501 * 109.47284 * 125.00324 * 23 21 19 26 26 H 1.48497 * 109.47168 * 245.00234 * 23 21 19 27 27 C 1.52997 * 109.46889 * 299.99799 * 6 5 4 28 28 C 1.53003 * 109.46922 * 149.99864 * 3 2 1 29 29 H 1.09004 * 109.47051 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47489 * 299.99944 * 1 2 3 31 31 H 1.08999 * 109.47145 * 60.00613 * 1 2 3 32 32 H 1.08998 * 109.47354 * 29.99808 * 3 2 1 33 33 H 1.08998 * 109.47374 * 300.00341 * 4 3 2 34 34 H 1.09000 * 109.46870 * 60.00372 * 4 3 2 35 35 H 1.08998 * 109.47359 * 300.00285 * 5 4 3 36 36 H 1.09003 * 109.47165 * 180.02562 * 5 4 3 37 37 H 1.09003 * 109.46763 * 59.99211 * 6 5 4 38 38 H 1.09001 * 109.58914 * 353.37393 * 10 9 7 39 39 H 1.09001 * 109.58882 * 113.79744 * 10 9 7 40 40 H 1.09003 * 109.49942 * 65.31883 * 11 10 9 41 41 H 1.09000 * 109.50263 * 185.41560 * 11 10 9 42 42 H 1.09003 * 109.46573 * 181.38213 * 12 11 10 43 43 H 1.08996 * 109.45958 * 301.34891 * 12 11 10 44 44 H 1.08994 * 109.49703 * 58.58989 * 13 12 11 45 45 H 1.09001 * 109.49690 * 178.65638 * 13 12 11 46 46 H 1.09001 * 109.47536 * 300.13798 * 16 14 9 47 47 H 1.09004 * 109.47138 * 60.13875 * 16 14 9 48 48 H 1.09004 * 109.47312 * 94.64574 * 18 17 16 49 49 H 1.09008 * 109.47062 * 214.63856 * 18 17 16 50 50 H 1.08995 * 109.47064 * 334.64203 * 18 17 16 51 51 H 0.97001 * 120.00107 * 180.02562 * 22 21 19 52 52 H 1.08998 * 109.47218 * 299.99680 * 27 6 5 53 53 H 1.09000 * 109.46938 * 179.97438 * 27 6 5 54 54 H 1.08990 * 109.47104 * 299.99626 * 28 3 2 55 55 H 1.09005 * 109.46949 * 60.00157 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 2.2177 1.7713 -1.4426 5 6 2.8405 3.1688 -1.4425 6 6 4.1892 3.1261 -0.7214 7 6 4.8029 4.5025 -0.7220 8 8 4.6983 5.2134 0.2551 9 7 5.4680 4.9434 -1.8081 10 6 5.4843 4.1543 -3.0473 11 6 6.9392 3.9382 -3.4752 12 6 7.6416 5.2935 -3.5839 13 6 7.6372 5.9832 -2.2176 14 6 6.1854 6.2253 -1.7773 15 1 5.7065 6.9285 -2.4585 16 6 6.1660 6.7898 -0.3555 17 7 6.8790 8.0693 -0.3283 18 6 8.2915 8.1126 0.0580 19 6 6.2253 9.2248 -0.6641 20 1 5.1594 9.3063 -0.5103 21 6 6.9326 10.2912 -1.2022 22 7 8.1967 10.1407 -1.5366 23 14 6.0904 11.9398 -1.4515 24 1 4.7173 11.8843 -0.8887 25 1 6.8659 13.0013 -0.7610 26 1 6.0183 12.2442 -2.9032 27 6 3.9818 2.6603 0.7211 28 6 3.3588 1.2633 0.7213 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5137 -0.8900 32 1 1.3449 1.9994 0.5138 33 1 2.8830 1.0774 -1.9564 34 1 1.2569 1.8014 -1.9564 35 1 2.1755 3.8629 -0.9286 36 1 2.9879 3.5009 -2.4702 37 1 4.8542 2.4319 -1.2353 38 1 5.0077 3.1897 -2.8726 39 1 4.9493 4.6921 -3.8301 40 1 7.4489 3.3227 -2.7338 41 1 6.9634 3.4374 -4.4430 42 1 8.6703 5.1443 -3.9120 43 1 7.1168 5.9175 -4.3072 44 1 8.1403 5.3485 -1.4881 45 1 8.1585 6.9377 -2.2902 46 1 5.1341 6.9422 -0.0391 47 1 6.6535 6.0878 0.3210 48 1 8.9141 8.0752 -0.8360 49 1 8.4914 9.0362 0.6015 50 1 8.5201 7.2589 0.6959 51 1 8.6910 10.8860 -1.9122 52 1 3.3168 3.3544 1.2350 53 1 4.9427 2.6294 1.2347 54 1 3.2110 0.9315 1.7489 55 1 4.0241 0.5694 0.2074 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001158413686.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:04 Heat of formation + Delta-G solvation = -80.958033 kcal Electronic energy + Delta-G solvation = -31948.190321 eV Core-core repulsion = 27984.862032 eV Total energy + Delta-G solvation = -3963.328289 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.81086 -39.96521 -38.50550 -37.37715 -36.96460 -33.94235 -33.69105 -32.01319 -31.71437 -30.88462 -28.35596 -27.69388 -27.32034 -25.73972 -24.33589 -23.75614 -23.48626 -22.25023 -21.66168 -20.79641 -19.80787 -18.81559 -17.75518 -17.55205 -17.12902 -16.87480 -16.58447 -16.05747 -15.93135 -15.53421 -15.39891 -15.36312 -15.10022 -14.80900 -14.63367 -14.43604 -14.23679 -14.18802 -13.90367 -13.80264 -13.31078 -13.28623 -13.04334 -12.88816 -12.79630 -12.64962 -12.55097 -12.46952 -12.14667 -12.12789 -12.08924 -12.00879 -11.86154 -11.81432 -11.69880 -11.54452 -11.48867 -11.37849 -11.26799 -10.67456 -10.36276 -9.99387 -9.44777 -8.66971 -7.81113 -5.35024 1.42608 1.43962 1.54906 1.72015 2.06316 2.50779 2.81519 3.29921 3.55550 3.66233 3.73154 3.82386 3.93617 3.98259 4.06032 4.11329 4.16590 4.20474 4.29125 4.31896 4.42151 4.44197 4.52661 4.55637 4.56841 4.58713 4.63765 4.69731 4.75447 4.81232 4.82219 4.86696 4.92648 5.01862 5.04024 5.06931 5.10565 5.15401 5.18952 5.20062 5.23941 5.25651 5.31387 5.34717 5.38075 5.43620 5.49387 5.63025 5.72132 5.82221 6.31687 6.35771 6.62545 7.16710 7.33882 7.89272 8.36106 9.20315 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.016351 B = 0.002904 C = 0.002712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1712.023040 B = 9641.152124 C =10322.012790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.403 6.403 3 C 0.085 3.915 4 C -0.127 4.127 5 C -0.103 4.103 6 C -0.096 4.096 7 C 0.505 3.495 8 O -0.573 6.573 9 N -0.605 5.605 10 C 0.098 3.902 11 C -0.125 4.125 12 C -0.116 4.116 13 C -0.111 4.111 14 C 0.139 3.861 15 H 0.040 0.960 16 C 0.173 3.827 17 N -0.615 5.615 18 C 0.178 3.822 19 C -0.262 4.262 20 H 0.054 0.946 21 C -0.043 4.043 22 N -0.930 5.930 23 Si 0.965 3.035 24 H -0.273 1.273 25 H -0.289 1.289 26 H -0.286 1.286 27 C -0.094 4.094 28 C -0.106 4.106 29 H 0.096 0.904 30 H 0.043 0.957 31 H 0.049 0.951 32 H 0.057 0.943 33 H 0.085 0.915 34 H 0.076 0.924 35 H 0.054 0.946 36 H 0.085 0.915 37 H 0.118 0.882 38 H 0.117 0.883 39 H 0.073 0.927 40 H 0.068 0.932 41 H 0.104 0.896 42 H 0.069 0.931 43 H 0.054 0.946 44 H 0.049 0.951 45 H 0.050 0.950 46 H 0.053 0.947 47 H 0.033 0.967 48 H 0.019 0.981 49 H 0.010 0.990 50 H 0.014 0.986 51 H 0.249 0.751 52 H 0.056 0.944 53 H 0.064 0.936 54 H 0.071 0.929 55 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.885 -23.912 -4.417 26.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.323 6.323 3 C 0.027 3.973 4 C -0.165 4.165 5 C -0.141 4.141 6 C -0.118 4.118 7 C 0.295 3.705 8 O -0.453 6.453 9 N -0.338 5.338 10 C -0.023 4.023 11 C -0.162 4.162 12 C -0.153 4.153 13 C -0.149 4.149 14 C 0.033 3.967 15 H 0.059 0.941 16 C 0.047 3.953 17 N -0.340 5.340 18 C 0.033 3.967 19 C -0.392 4.392 20 H 0.072 0.928 21 C -0.239 4.239 22 N -0.576 5.576 23 Si 0.793 3.207 24 H -0.198 1.198 25 H -0.216 1.216 26 H -0.212 1.212 27 C -0.132 4.132 28 C -0.144 4.144 29 H 0.115 0.885 30 H 0.062 0.938 31 H 0.067 0.933 32 H 0.075 0.925 33 H 0.103 0.897 34 H 0.095 0.905 35 H 0.073 0.927 36 H 0.103 0.897 37 H 0.136 0.864 38 H 0.135 0.865 39 H 0.091 0.909 40 H 0.087 0.913 41 H 0.122 0.878 42 H 0.088 0.912 43 H 0.073 0.927 44 H 0.068 0.932 45 H 0.068 0.932 46 H 0.071 0.929 47 H 0.052 0.948 48 H 0.037 0.963 49 H 0.029 0.971 50 H 0.033 0.967 51 H 0.058 0.942 52 H 0.075 0.925 53 H 0.082 0.918 54 H 0.090 0.910 55 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -10.722 -23.600 -3.950 26.221 hybrid contribution -0.142 1.952 0.024 1.958 sum -10.864 -21.648 -3.925 24.537 Atomic orbital electron populations 1.22942 0.80055 1.03645 1.00545 1.87867 1.20901 1.28259 1.95222 1.22223 0.94875 0.84107 0.96075 1.21934 1.02120 0.95653 0.96796 1.21459 0.93792 0.97835 1.00980 1.21417 0.98759 0.92258 0.99320 1.21370 0.77645 0.89557 0.81911 1.90728 1.60595 1.57799 1.36165 1.48476 1.50649 1.21138 1.13511 1.22123 0.98171 0.96834 0.85216 1.21897 0.94751 0.96346 1.03254 1.21503 1.01273 0.97031 0.95530 1.21795 0.95352 1.00099 0.97681 1.21900 0.91940 0.83176 0.99695 0.94148 1.21391 0.96182 0.85211 0.92471 1.44345 1.08659 1.02872 1.78093 1.20586 0.84867 0.95424 0.95800 1.19351 0.92677 0.92477 1.34733 0.92836 1.25823 0.97121 1.02233 0.98710 1.70174 1.09361 1.31027 1.47061 0.85245 0.78062 0.80065 0.77312 1.19810 1.21590 1.21242 1.21250 1.01314 0.96133 0.94487 1.21502 0.95387 0.96247 1.01243 0.88510 0.93821 0.93251 0.92459 0.89667 0.90535 0.92669 0.89695 0.86405 0.86524 0.90887 0.91338 0.87753 0.91210 0.92749 0.93231 0.93153 0.92870 0.94836 0.96333 0.97121 0.96724 0.94191 0.92526 0.91772 0.91029 0.90068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 10.82 113.37 1.23 1.51 16 2 O -0.40 -6.86 10.35 -148.98 -1.54 -8.40 16 3 C 0.08 1.35 2.61 30.60 0.08 1.43 16 4 C -0.13 -1.69 5.54 30.59 0.17 -1.52 16 5 C -0.10 -1.71 4.92 30.59 0.15 -1.56 16 6 C -0.10 -1.94 1.66 -11.54 -0.02 -1.96 16 7 C 0.51 15.57 6.69 87.66 0.59 16.16 16 8 O -0.57 -23.28 11.63 -3.02 -0.04 -23.32 16 9 N -0.60 -18.25 2.97 -794.25 -2.36 -20.60 16 10 C 0.10 1.93 5.63 86.36 0.49 2.42 16 11 C -0.12 -2.36 6.08 30.67 0.19 -2.17 16 12 C -0.12 -3.16 5.88 30.62 0.18 -2.98 16 13 C -0.11 -4.15 4.74 30.82 0.15 -4.00 16 14 C 0.14 5.58 3.18 45.12 0.14 5.72 16 15 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 16 C 0.17 8.32 3.64 86.38 0.31 8.64 16 17 N -0.62 -33.79 2.58 -726.93 -1.88 -35.66 16 18 C 0.18 9.50 8.17 127.77 1.04 10.54 16 19 C -0.26 -15.45 9.62 84.03 0.81 -14.64 16 20 H 0.05 3.20 7.84 -2.91 -0.02 3.18 16 21 C -0.04 -2.51 5.19 84.86 0.44 -2.07 16 22 N -0.93 -55.80 10.76 21.65 0.23 -55.57 16 23 Si 0.96 46.81 29.56 68.60 2.03 48.84 16 24 H -0.27 -12.90 7.11 99.48 0.71 -12.20 16 25 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 26 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 27 C -0.09 -1.97 4.69 30.58 0.14 -1.82 16 28 C -0.11 -1.75 5.57 30.58 0.17 -1.58 16 29 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.04 0.48 8.08 -2.39 -0.02 0.46 16 31 H 0.05 0.49 7.87 -2.39 -0.02 0.47 16 32 H 0.06 0.95 7.79 -2.39 -0.02 0.93 16 33 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.08 0.89 7.87 -2.39 -0.02 0.88 16 35 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.08 1.23 6.84 -2.39 -0.02 1.21 16 37 H 0.12 1.77 6.77 -2.39 -0.02 1.76 16 38 H 0.12 1.50 4.91 -2.39 -0.01 1.49 16 39 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 40 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 41 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 42 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 43 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 44 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 45 H 0.05 2.34 6.28 -2.39 -0.01 2.33 16 46 H 0.05 2.81 6.00 -2.61 -0.02 2.79 16 47 H 0.03 1.62 7.04 -2.38 -0.02 1.60 16 48 H 0.02 1.04 6.04 -2.39 -0.01 1.02 16 49 H 0.01 0.58 7.52 -2.38 -0.02 0.56 16 50 H 0.01 0.69 7.79 -2.39 -0.02 0.67 16 51 H 0.25 14.41 8.31 -92.71 -0.77 13.63 16 52 H 0.06 1.41 7.89 -2.39 -0.02 1.40 16 53 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 54 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 55 H 0.08 1.19 8.14 -2.38 -0.02 1.18 16 Total: -1.00 -72.49 404.49 3.55 -68.94 By element: Atomic # 1 Polarization: 12.82 SS G_CDS: 0.84 Total: 13.66 kcal Atomic # 6 Polarization: 5.87 SS G_CDS: 6.26 Total: 12.13 kcal Atomic # 7 Polarization: -107.84 SS G_CDS: -4.00 Total: -111.84 kcal Atomic # 8 Polarization: -30.15 SS G_CDS: -1.58 Total: -31.72 kcal Atomic # 14 Polarization: 46.81 SS G_CDS: 2.03 Total: 48.84 kcal Total: -72.49 3.55 -68.94 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158413686.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.019 kcal (2) G-P(sol) polarization free energy of solvation -72.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds