Wall clock time and date at job start Tue Mar 31 2020 22:19:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36940 * 119.99896 * 2 1 4 4 H 1.07998 * 120.00307 * 185.56419 * 3 2 1 5 5 C 1.38816 * 119.99895 * 5.57103 * 3 2 1 6 6 N 1.31623 * 120.00035 * 354.88974 * 5 3 2 7 7 Si 1.86799 * 120.00055 * 174.89508 * 5 3 2 8 8 H 1.48507 * 109.46792 * 59.99757 * 7 5 3 9 9 H 1.48500 * 109.47347 * 179.97438 * 7 5 3 10 10 H 1.48496 * 109.46953 * 299.99972 * 7 5 3 11 11 C 1.46500 * 120.00075 * 180.02562 * 2 1 3 12 12 C 1.53001 * 109.46579 * 94.18572 * 11 2 1 13 13 H 1.09004 * 109.58397 * 298.29622 * 12 11 2 14 14 C 1.53193 * 109.58937 * 58.58596 * 12 11 2 15 15 C 1.53043 * 109.31188 * 174.41745 * 14 12 11 16 16 C 1.53036 * 109.54073 * 298.63749 * 15 14 12 17 17 C 1.53193 * 109.31632 * 61.36158 * 16 15 14 18 18 N 1.46933 * 109.58340 * 178.01886 * 12 11 2 19 19 C 1.34773 * 120.62805 * 6.59965 * 18 12 11 20 20 O 1.21287 * 120.00480 * 5.46881 * 19 18 12 21 21 C 1.50706 * 119.99973 * 185.46636 * 19 18 12 22 22 C 1.52995 * 109.47233 * 180.02562 * 21 19 18 23 23 C 1.52999 * 109.47186 * 180.02562 * 22 21 19 24 24 H 1.09000 * 109.48076 * 304.97465 * 23 22 21 25 25 C 1.53094 * 109.48288 * 184.94076 * 23 22 21 26 26 C 1.53170 * 109.16390 * 182.40722 * 25 23 22 27 27 C 1.53181 * 109.03527 * 56.98485 * 26 25 23 28 28 C 1.53091 * 109.16241 * 303.01599 * 27 26 25 29 29 O 1.42899 * 109.41318 * 57.60779 * 28 27 26 30 30 H 1.09000 * 109.47597 * 55.29806 * 1 2 3 31 31 H 1.09001 * 109.46847 * 295.29973 * 1 2 3 32 32 H 1.08998 * 109.46966 * 175.30337 * 1 2 3 33 33 H 0.97003 * 119.99533 * 179.97438 * 6 5 3 34 34 H 1.08994 * 109.46670 * 214.18215 * 11 2 1 35 35 H 1.08995 * 109.46746 * 334.18810 * 11 2 1 36 36 H 1.08999 * 109.49658 * 294.36929 * 14 12 11 37 37 H 1.08996 * 109.49636 * 54.43377 * 14 12 11 38 38 H 1.09004 * 109.45727 * 58.65697 * 15 14 12 39 39 H 1.08994 * 109.45907 * 178.62815 * 15 14 12 40 40 H 1.08994 * 109.50057 * 181.31979 * 16 15 14 41 41 H 1.09006 * 109.49353 * 301.41402 * 16 15 14 42 42 H 1.08997 * 109.58620 * 65.15384 * 17 16 15 43 43 H 1.08995 * 109.58717 * 185.43923 * 17 16 15 44 44 H 1.09003 * 109.46826 * 300.00471 * 21 19 18 45 45 H 1.08996 * 109.46891 * 59.99907 * 21 19 18 46 46 H 1.09003 * 109.47480 * 299.99924 * 22 21 19 47 47 H 1.09002 * 109.46997 * 60.00019 * 22 21 19 48 48 H 1.09003 * 109.52227 * 302.31701 * 25 23 22 49 49 H 1.09004 * 109.52130 * 62.50028 * 25 23 22 50 50 H 1.09004 * 109.54639 * 297.11641 * 26 25 23 51 51 H 1.09009 * 109.61620 * 176.89010 * 26 25 23 52 52 H 1.09005 * 109.52060 * 183.11114 * 27 26 25 53 53 H 1.08994 * 109.52121 * 62.92475 * 27 26 25 54 54 H 1.08996 * 109.48197 * 297.62703 * 28 27 26 55 55 H 1.08994 * 109.48095 * 177.59153 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.2259 1.1882 -0.0907 5 6 1.4605 2.3853 0.1167 6 7 0.1443 2.3897 0.1261 7 14 2.4010 3.9928 0.2603 8 1 3.2468 4.1809 -0.9458 9 1 1.4406 5.1200 0.3715 10 1 3.2633 3.9555 1.4686 11 6 2.1975 -1.2687 -0.0006 12 6 2.5437 -1.6570 -1.4394 13 1 1.6261 -1.7971 -2.0109 14 6 3.3849 -0.5496 -2.0820 15 6 3.8444 -1.0036 -3.4695 16 6 4.7144 -2.2556 -3.3364 17 6 3.8883 -3.3823 -2.7080 18 7 3.3195 -2.9048 -1.4398 19 6 3.5089 -3.5959 -0.2983 20 8 2.9558 -3.2445 0.7223 21 6 4.4078 -4.8054 -0.2901 22 6 4.4488 -5.4008 1.1186 23 6 5.3619 -6.6284 1.1271 24 1 5.0286 -7.3347 0.3668 25 6 5.3070 -7.2962 2.5037 26 6 6.2688 -8.4881 2.5231 27 6 7.6770 -7.9995 2.1698 28 6 7.6405 -7.3047 0.8062 29 8 6.7043 -6.2258 0.8478 30 1 -0.3634 0.5850 -0.8448 31 1 -0.3633 0.4392 0.9291 32 1 -0.3633 -1.0242 -0.0841 33 1 -0.3372 3.2278 0.2080 34 1 3.1154 -1.1585 0.5768 35 1 1.5780 -2.0461 0.4465 36 1 2.7847 0.3553 -2.1756 37 1 4.2555 -0.3460 -1.4586 38 1 2.9733 -1.2305 -4.0842 39 1 4.4228 -0.2079 -3.9388 40 1 5.0604 -2.5647 -4.3226 41 1 5.5728 -2.0362 -2.7014 42 1 3.0815 -3.6648 -3.3843 43 1 4.5283 -4.2447 -2.5222 44 1 4.0225 -5.5492 -0.9876 45 1 5.4138 -4.5125 -0.5906 46 1 4.8339 -4.6572 1.8164 47 1 3.4427 -5.6939 1.4186 48 1 5.6014 -6.5780 3.2689 49 1 4.2925 -7.6434 2.6998 50 1 5.9459 -9.2293 1.7919 51 1 6.2768 -8.9357 3.5170 52 1 8.3575 -8.8500 2.1272 53 1 8.0192 -7.2956 2.9284 54 1 7.3370 -8.0199 0.0418 55 1 8.6312 -6.9173 0.5690 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001158541562.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:21 Heat of formation + Delta-G solvation = -77.223810 kcal Electronic energy + Delta-G solvation = -31323.220892 eV Core-core repulsion = 27360.054531 eV Total energy + Delta-G solvation = -3963.166361 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.52776 -40.30197 -38.50708 -37.33363 -35.04743 -34.49926 -33.76655 -33.68100 -31.80396 -30.79755 -28.02657 -28.01495 -26.73690 -25.49199 -24.75181 -23.90112 -22.75348 -21.98381 -21.50070 -21.12709 -19.74670 -18.76632 -17.83094 -17.46598 -17.12085 -16.82343 -16.49709 -16.33944 -15.53214 -15.51123 -15.35063 -15.31913 -15.12692 -14.81171 -14.72587 -14.59259 -14.40368 -14.14800 -13.88183 -13.59424 -13.54601 -13.19996 -12.97315 -12.93510 -12.75101 -12.66371 -12.58341 -12.18428 -12.11860 -12.10446 -12.05521 -11.99467 -11.85001 -11.81144 -11.68361 -11.53093 -11.49985 -11.26691 -11.12922 -10.62110 -10.30986 -10.09101 -9.43978 -8.87035 -7.70707 -5.14519 1.43384 1.46979 1.53071 1.75494 2.09666 2.53216 2.90039 3.34727 3.55107 3.78514 3.81785 3.92883 3.96362 4.00176 4.01989 4.07461 4.10525 4.19170 4.21003 4.34357 4.39700 4.41336 4.47430 4.54778 4.63520 4.66781 4.70483 4.72849 4.79354 4.82408 4.88274 4.91735 4.96438 5.04272 5.06595 5.09105 5.12265 5.16134 5.18697 5.20374 5.23609 5.31901 5.34339 5.39399 5.44268 5.53660 5.56527 5.59836 5.80273 5.84488 6.32609 6.39998 6.62195 7.20450 7.35011 7.94143 8.34336 9.27476 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.015112 B = 0.002653 C = 0.002501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1852.338782 B =10551.896447 C =11191.785126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.190 3.810 2 N -0.628 5.628 3 C -0.235 4.235 4 H 0.073 0.927 5 C -0.066 4.066 6 N -0.949 5.949 7 Si 0.967 3.033 8 H -0.274 1.274 9 H -0.294 1.294 10 H -0.284 1.284 11 C 0.177 3.823 12 C 0.136 3.864 13 H 0.052 0.948 14 C -0.112 4.112 15 C -0.117 4.117 16 C -0.127 4.127 17 C 0.102 3.898 18 N -0.608 5.608 19 C 0.498 3.502 20 O -0.577 6.577 21 C -0.121 4.121 22 C -0.093 4.093 23 C 0.097 3.903 24 H 0.078 0.922 25 C -0.154 4.154 26 C -0.121 4.121 27 C -0.157 4.157 28 C 0.055 3.945 29 O -0.400 6.400 30 H 0.026 0.974 31 H 0.005 0.995 32 H 0.010 0.990 33 H 0.243 0.757 34 H 0.022 0.978 35 H 0.058 0.942 36 H 0.058 0.942 37 H 0.038 0.962 38 H 0.064 0.936 39 H 0.066 0.934 40 H 0.105 0.895 41 H 0.059 0.941 42 H 0.080 0.920 43 H 0.115 0.885 44 H 0.120 0.880 45 H 0.107 0.893 46 H 0.048 0.952 47 H 0.079 0.921 48 H 0.054 0.946 49 H 0.080 0.920 50 H 0.075 0.925 51 H 0.071 0.929 52 H 0.089 0.911 53 H 0.057 0.943 54 H 0.064 0.936 55 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.339 -25.670 -6.233 30.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.046 3.954 2 N -0.354 5.354 3 C -0.365 4.365 4 H 0.090 0.910 5 C -0.259 4.259 6 N -0.599 5.599 7 Si 0.796 3.204 8 H -0.200 1.200 9 H -0.220 1.220 10 H -0.211 1.211 11 C 0.051 3.949 12 C 0.030 3.970 13 H 0.070 0.930 14 C -0.151 4.151 15 C -0.155 4.155 16 C -0.165 4.165 17 C -0.019 4.019 18 N -0.342 5.342 19 C 0.289 3.711 20 O -0.457 6.457 21 C -0.160 4.160 22 C -0.131 4.131 23 C 0.039 3.961 24 H 0.096 0.904 25 C -0.192 4.192 26 C -0.158 4.158 27 C -0.195 4.195 28 C -0.021 4.021 29 O -0.320 6.320 30 H 0.045 0.955 31 H 0.023 0.977 32 H 0.029 0.971 33 H 0.053 0.947 34 H 0.040 0.960 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.057 0.943 38 H 0.083 0.917 39 H 0.085 0.915 40 H 0.123 0.877 41 H 0.077 0.923 42 H 0.098 0.902 43 H 0.133 0.867 44 H 0.138 0.862 45 H 0.125 0.875 46 H 0.067 0.933 47 H 0.097 0.903 48 H 0.073 0.927 49 H 0.098 0.902 50 H 0.094 0.906 51 H 0.090 0.910 52 H 0.108 0.892 53 H 0.076 0.924 54 H 0.082 0.918 55 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 14.997 -25.175 -5.717 29.856 hybrid contribution -0.102 1.400 0.591 1.523 sum 14.894 -23.775 -5.126 28.520 Atomic orbital electron populations 1.20660 0.82331 0.93288 0.99167 1.44578 1.02478 1.01989 1.86330 1.19501 0.91179 0.84674 1.41156 0.90958 1.25633 0.96594 1.00856 1.02788 1.70416 1.06131 1.24810 1.58545 0.85318 0.77338 0.79576 0.78153 1.19981 1.21964 1.21097 1.21240 0.95170 0.85683 0.92809 1.21853 0.92739 0.83384 0.99037 0.92979 1.21768 0.98524 0.98025 0.96739 1.21545 1.00016 0.98536 0.95355 1.21895 0.97760 0.94453 1.02367 1.22057 0.98190 0.97830 0.83853 1.48469 1.52826 1.23584 1.09275 1.21527 0.81750 0.85424 0.82432 1.90746 1.50638 1.69724 1.34606 1.21643 0.99937 0.94606 0.99858 1.21315 0.99245 0.96534 0.96047 1.22109 0.82314 0.95296 0.96343 0.90395 1.22216 1.01121 0.98279 0.97551 1.21596 0.94442 0.97055 1.02709 1.22202 0.97890 1.01213 0.98167 1.22727 0.93331 0.89605 0.96462 1.87935 1.17865 1.34293 1.91889 0.95528 0.97651 0.97124 0.94727 0.95972 0.92350 0.92324 0.94331 0.91702 0.91513 0.87688 0.92255 0.90193 0.86709 0.86179 0.87466 0.93291 0.90293 0.92680 0.90151 0.90623 0.91039 0.89243 0.92410 0.91794 0.88276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.19 10.59 8.98 127.77 1.15 11.74 16 2 N -0.63 -34.85 2.79 -726.94 -2.03 -36.88 16 3 C -0.24 -13.69 7.71 84.03 0.65 -13.04 16 4 H 0.07 4.11 7.11 -2.91 -0.02 4.09 16 5 C -0.07 -3.93 5.45 84.86 0.46 -3.46 16 6 N -0.95 -58.82 9.44 21.65 0.20 -58.62 16 7 Si 0.97 47.65 29.56 68.60 2.03 49.68 16 8 H -0.27 -12.83 7.11 99.48 0.71 -12.12 16 9 H -0.29 -14.46 7.11 99.48 0.71 -13.75 16 10 H -0.28 -13.82 7.11 99.48 0.71 -13.11 16 11 C 0.18 8.53 3.68 86.38 0.32 8.85 16 12 C 0.14 5.24 3.21 44.97 0.14 5.39 16 13 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 14 C -0.11 -4.21 4.14 30.67 0.13 -4.09 16 15 C -0.12 -3.09 5.88 30.62 0.18 -2.91 16 16 C -0.13 -2.42 6.08 30.67 0.19 -2.24 16 17 C 0.10 1.92 6.34 86.36 0.55 2.47 16 18 N -0.61 -18.01 2.98 -794.92 -2.37 -20.38 16 19 C 0.50 15.47 7.53 87.66 0.66 16.14 16 20 O -0.58 -23.65 11.54 -3.05 -0.04 -23.69 16 21 C -0.12 -2.46 3.95 29.85 0.12 -2.34 16 22 C -0.09 -2.05 4.21 30.59 0.13 -1.92 16 23 C 0.10 1.61 2.64 30.63 0.08 1.69 16 24 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 25 C -0.15 -2.39 5.42 30.68 0.17 -2.23 16 26 C -0.12 -1.39 6.03 30.71 0.19 -1.20 16 27 C -0.16 -1.78 6.14 30.69 0.19 -1.60 16 28 C 0.05 0.68 6.84 72.01 0.49 1.17 16 29 O -0.40 -7.50 9.94 -148.98 -1.48 -8.98 16 30 H 0.03 1.56 6.93 -2.39 -0.02 1.54 16 31 H 0.00 0.31 7.15 -2.39 -0.02 0.29 16 32 H 0.01 0.51 7.78 -2.39 -0.02 0.50 16 33 H 0.24 14.68 8.31 -92.71 -0.77 13.91 16 34 H 0.02 1.16 7.16 -2.39 -0.02 1.14 16 35 H 0.06 2.95 5.98 -2.39 -0.01 2.93 16 36 H 0.06 2.67 6.50 -2.39 -0.02 2.66 16 37 H 0.04 1.54 7.95 -2.39 -0.02 1.53 16 38 H 0.06 1.64 8.14 -2.39 -0.02 1.63 16 39 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 40 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 41 H 0.06 1.24 8.14 -2.38 -0.02 1.22 16 42 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 43 H 0.11 1.41 5.94 -2.39 -0.01 1.39 16 44 H 0.12 1.63 7.73 -2.39 -0.02 1.61 16 45 H 0.11 2.02 7.59 -2.39 -0.02 2.00 16 46 H 0.05 1.37 8.10 -2.39 -0.02 1.35 16 47 H 0.08 1.79 8.10 -2.39 -0.02 1.77 16 48 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 49 H 0.08 1.13 8.14 -2.38 -0.02 1.11 16 50 H 0.08 0.69 8.14 -2.38 -0.02 0.67 16 51 H 0.07 0.75 8.14 -2.38 -0.02 0.73 16 52 H 0.09 0.68 8.14 -2.38 -0.02 0.66 16 53 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 54 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 55 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 Total: -1.00 -74.92 406.28 2.93 -71.99 By element: Atomic # 1 Polarization: 13.63 SS G_CDS: 0.83 Total: 14.46 kcal Atomic # 6 Polarization: 6.63 SS G_CDS: 5.78 Total: 12.41 kcal Atomic # 7 Polarization: -111.68 SS G_CDS: -4.19 Total: -115.88 kcal Atomic # 8 Polarization: -31.15 SS G_CDS: -1.52 Total: -32.67 kcal Atomic # 14 Polarization: 47.65 SS G_CDS: 2.03 Total: 49.68 kcal Total: -74.92 2.93 -71.99 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158541562.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.231 kcal (2) G-P(sol) polarization free energy of solvation -74.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds