Wall clock time and date at job start Tue Mar 31 2020 22:19:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36934 * 119.99888 * 2 1 4 4 H 1.08003 * 120.00113 * 174.39284 * 3 2 1 5 5 C 1.38814 * 120.00467 * 354.38286 * 3 2 1 6 6 N 1.31625 * 119.99705 * 5.08635 * 5 3 2 7 7 Si 1.86802 * 120.00334 * 185.08190 * 5 3 2 8 8 H 1.48503 * 109.47051 * 0.02562 * 7 5 3 9 9 H 1.48498 * 109.46709 * 120.00160 * 7 5 3 10 10 H 1.48490 * 109.47057 * 240.00192 * 7 5 3 11 11 C 1.46501 * 120.00041 * 179.97438 * 2 1 3 12 12 C 1.52996 * 109.46846 * 94.25747 * 11 2 1 13 13 H 1.08998 * 109.59283 * 298.26906 * 12 11 2 14 14 C 1.53195 * 109.58504 * 58.55399 * 12 11 2 15 15 C 1.53042 * 109.31185 * 174.42118 * 14 12 11 16 16 C 1.53042 * 109.53740 * 298.62858 * 15 14 12 17 17 C 1.53196 * 109.30927 * 61.36890 * 16 15 14 18 18 N 1.46931 * 109.58553 * 177.98224 * 12 11 2 19 19 C 1.34774 * 120.62674 * 6.60987 * 18 12 11 20 20 O 1.21278 * 120.00385 * 5.73815 * 19 18 12 21 21 C 1.50707 * 119.99470 * 185.73100 * 19 18 12 22 22 C 1.53000 * 109.46588 * 180.02562 * 21 19 18 23 23 C 1.53010 * 109.46870 * 180.02562 * 22 21 19 24 24 H 1.08996 * 109.47765 * 54.97467 * 23 22 21 25 25 C 1.53091 * 109.47957 * 175.00299 * 23 22 21 26 26 C 1.53179 * 109.16219 * 177.59265 * 25 23 22 27 27 C 1.53181 * 109.03267 * 303.01891 * 26 25 23 28 28 C 1.53088 * 109.16398 * 56.97957 * 27 26 25 29 29 O 1.42900 * 109.47736 * 294.94328 * 23 22 21 30 30 H 1.08995 * 109.47127 * 184.71535 * 1 2 3 31 31 H 1.09004 * 109.47040 * 304.72012 * 1 2 3 32 32 H 1.09003 * 109.46488 * 64.71588 * 1 2 3 33 33 H 0.96989 * 119.99871 * 179.97438 * 6 5 3 34 34 H 1.09000 * 109.47111 * 334.26397 * 11 2 1 35 35 H 1.08993 * 109.47298 * 214.26441 * 11 2 1 36 36 H 1.08998 * 109.49643 * 294.36681 * 14 12 11 37 37 H 1.09000 * 109.49820 * 54.46856 * 14 12 11 38 38 H 1.09002 * 109.46303 * 58.65461 * 15 14 12 39 39 H 1.09004 * 109.45737 * 178.61355 * 15 14 12 40 40 H 1.08997 * 109.49807 * 181.31840 * 16 15 14 41 41 H 1.08996 * 109.49922 * 301.38810 * 16 15 14 42 42 H 1.08998 * 109.58579 * 65.15001 * 17 16 15 43 43 H 1.08995 * 109.58649 * 185.43120 * 17 16 15 44 44 H 1.08994 * 109.47661 * 300.00287 * 21 19 18 45 45 H 1.08997 * 109.46915 * 60.00534 * 21 19 18 46 46 H 1.08999 * 109.47183 * 299.99881 * 22 21 19 47 47 H 1.08997 * 109.47242 * 60.00508 * 22 21 19 48 48 H 1.09007 * 109.51644 * 297.49133 * 25 23 22 49 49 H 1.09001 * 109.52513 * 57.68314 * 25 23 22 50 50 H 1.09001 * 109.54144 * 62.88077 * 26 25 23 51 51 H 1.08995 * 109.54283 * 183.15193 * 26 25 23 52 52 H 1.09001 * 109.52083 * 176.88933 * 27 26 25 53 53 H 1.08998 * 109.52155 * 297.00911 * 27 26 25 54 54 H 1.08997 * 109.47980 * 62.37585 * 28 27 26 55 55 H 1.09004 * 109.47832 * 182.39709 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.2258 1.1882 0.0914 5 6 1.4607 2.3852 -0.1177 6 7 0.1445 2.3897 -0.1284 7 14 2.4013 3.9928 -0.2606 8 1 3.8602 3.7176 -0.2239 9 1 2.0553 4.6563 -1.5432 10 1 2.0363 4.8821 0.8711 11 6 2.1975 -1.2687 0.0006 12 6 2.5452 -1.6574 -1.4378 13 1 1.6284 -1.7982 -2.0101 14 6 3.3865 -0.5499 -2.0799 15 6 3.8475 -1.0041 -3.4668 16 6 4.7183 -2.2554 -3.3323 17 6 3.8921 -3.3824 -2.7043 18 7 3.3218 -2.9048 -1.4369 19 6 3.5103 -3.5954 -0.2950 20 8 2.9521 -3.2468 0.7238 21 6 4.4147 -4.8008 -0.2841 22 6 4.4535 -5.3965 1.1247 23 6 5.3722 -6.6200 1.1359 24 1 6.3543 -6.3406 0.7547 25 6 5.5100 -7.1418 2.5685 26 6 6.3818 -8.4013 2.5632 27 6 5.7565 -9.4378 1.6246 28 6 5.6091 -8.8273 0.2285 29 8 4.8134 -7.6431 0.3094 30 1 -0.3633 -1.0241 0.0845 31 1 -0.3633 0.5853 0.8447 32 1 -0.3632 0.4390 -0.9293 33 1 -0.3369 3.2277 -0.2103 34 1 1.5775 -2.0461 0.4472 35 1 3.1147 -1.1585 0.5791 36 1 2.7859 0.3547 -2.1745 37 1 4.2567 -0.3459 -1.4560 38 1 2.9772 -1.2316 -4.0823 39 1 4.4258 -0.2080 -3.9360 40 1 5.0654 -2.5648 -4.3181 41 1 5.5761 -2.0352 -2.6970 42 1 3.0862 -3.6655 -3.3814 43 1 4.5323 -4.2445 -2.5177 44 1 4.0353 -5.5462 -0.9830 45 1 5.4204 -4.5032 -0.5809 46 1 4.8328 -4.6513 1.8239 47 1 3.4477 -5.6942 1.4211 48 1 5.9768 -6.3783 3.1909 49 1 4.5236 -7.3832 2.9648 50 1 7.3832 -8.1500 2.2137 51 1 6.4381 -8.8100 3.5721 52 1 6.3995 -10.3164 1.5720 53 1 4.7757 -9.7264 2.0024 54 1 6.5944 -8.5769 -0.1646 55 1 5.1255 -9.5459 -0.4333 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001158541563.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:25 Heat of formation + Delta-G solvation = -77.415815 kcal Electronic energy + Delta-G solvation = -31306.214957 eV Core-core repulsion = 27343.040270 eV Total energy + Delta-G solvation = -3963.174687 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.52543 -40.30007 -38.50131 -37.33839 -35.04539 -34.49697 -33.75563 -33.67560 -31.81173 -30.79494 -28.03553 -28.00565 -26.73478 -25.48973 -24.74498 -23.89947 -22.75517 -21.98141 -21.48246 -21.13192 -19.74641 -18.77246 -17.82891 -17.48142 -17.11269 -16.83596 -16.52680 -16.23515 -15.57275 -15.45634 -15.42483 -15.31512 -15.12479 -14.80415 -14.74964 -14.54311 -14.37553 -14.19845 -13.84848 -13.59649 -13.54173 -13.19765 -12.96616 -12.95539 -12.75039 -12.70106 -12.59214 -12.17325 -12.13076 -12.06621 -12.04054 -11.97052 -11.83460 -11.80739 -11.67812 -11.52593 -11.49099 -11.28914 -11.12684 -10.63185 -10.30890 -10.10096 -9.43898 -8.86792 -7.70792 -5.14686 1.44574 1.45025 1.55451 1.75901 2.09156 2.53222 2.89679 3.34375 3.55642 3.78492 3.81850 3.93427 3.96461 4.00178 4.02884 4.07166 4.10841 4.19368 4.21764 4.34468 4.39538 4.42227 4.47988 4.55008 4.64204 4.66383 4.71495 4.73737 4.79316 4.81897 4.88825 4.92469 4.96691 5.03489 5.07440 5.09817 5.12410 5.16652 5.18482 5.21063 5.23671 5.32438 5.34247 5.40649 5.44149 5.54597 5.56215 5.59717 5.80376 5.84459 6.32416 6.39320 6.62458 7.20024 7.34795 7.93565 8.34367 9.27920 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.017387 B = 0.002583 C = 0.002417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1609.999709 B =10839.360382 C =11580.104592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.190 3.810 2 N -0.629 5.629 3 C -0.230 4.230 4 H 0.071 0.929 5 C -0.067 4.067 6 N -0.949 5.949 7 Si 0.967 3.033 8 H -0.268 1.268 9 H -0.290 1.290 10 H -0.295 1.295 11 C 0.177 3.823 12 C 0.136 3.864 13 H 0.047 0.953 14 C -0.110 4.110 15 C -0.118 4.118 16 C -0.125 4.125 17 C 0.102 3.898 18 N -0.608 5.608 19 C 0.499 3.501 20 O -0.577 6.577 21 C -0.121 4.121 22 C -0.093 4.093 23 C 0.097 3.903 24 H 0.075 0.925 25 C -0.154 4.154 26 C -0.121 4.121 27 C -0.156 4.156 28 C 0.055 3.945 29 O -0.398 6.398 30 H 0.008 0.992 31 H 0.020 0.980 32 H 0.013 0.987 33 H 0.243 0.757 34 H 0.057 0.943 35 H 0.026 0.974 36 H 0.058 0.942 37 H 0.041 0.959 38 H 0.061 0.939 39 H 0.067 0.933 40 H 0.104 0.896 41 H 0.063 0.937 42 H 0.075 0.925 43 H 0.115 0.885 44 H 0.112 0.888 45 H 0.115 0.885 46 H 0.074 0.926 47 H 0.054 0.946 48 H 0.077 0.923 49 H 0.057 0.943 50 H 0.073 0.927 51 H 0.071 0.929 52 H 0.089 0.911 53 H 0.059 0.941 54 H 0.062 0.938 55 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.717 -24.750 -5.099 30.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 N -0.354 5.354 3 C -0.360 4.360 4 H 0.089 0.911 5 C -0.259 4.259 6 N -0.600 5.600 7 Si 0.796 3.204 8 H -0.192 1.192 9 H -0.217 1.217 10 H -0.223 1.223 11 C 0.051 3.949 12 C 0.030 3.970 13 H 0.065 0.935 14 C -0.149 4.149 15 C -0.156 4.156 16 C -0.163 4.163 17 C -0.020 4.020 18 N -0.342 5.342 19 C 0.289 3.711 20 O -0.457 6.457 21 C -0.161 4.161 22 C -0.131 4.131 23 C 0.040 3.960 24 H 0.093 0.907 25 C -0.192 4.192 26 C -0.159 4.159 27 C -0.194 4.194 28 C -0.021 4.021 29 O -0.317 6.317 30 H 0.026 0.974 31 H 0.038 0.962 32 H 0.032 0.968 33 H 0.053 0.947 34 H 0.075 0.925 35 H 0.044 0.956 36 H 0.076 0.924 37 H 0.060 0.940 38 H 0.079 0.921 39 H 0.086 0.914 40 H 0.122 0.878 41 H 0.082 0.918 42 H 0.093 0.907 43 H 0.133 0.867 44 H 0.130 0.870 45 H 0.133 0.867 46 H 0.092 0.908 47 H 0.072 0.928 48 H 0.096 0.904 49 H 0.076 0.924 50 H 0.092 0.908 51 H 0.090 0.910 52 H 0.107 0.893 53 H 0.078 0.922 54 H 0.080 0.920 55 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 16.161 -24.435 -4.667 29.665 hybrid contribution -0.122 1.447 0.390 1.503 sum 16.039 -22.988 -4.277 28.355 Atomic orbital electron populations 1.20665 0.82417 0.93180 0.99244 1.44595 1.02453 1.02086 1.86242 1.19512 0.91108 0.84590 1.40758 0.91099 1.25627 0.96558 1.00809 1.02876 1.70435 1.06191 1.24672 1.58673 0.85166 0.78280 0.80135 0.76793 1.19234 1.21659 1.22278 1.21261 0.95248 0.85584 0.92787 1.21850 0.92629 0.83402 0.99141 0.93481 1.21736 0.98591 0.97896 0.96636 1.21558 0.99946 0.98622 0.95461 1.21890 0.97771 0.94255 1.02393 1.22050 0.98125 0.97899 0.83899 1.48476 1.52775 1.23645 1.09256 1.21517 0.81997 0.85149 0.82426 1.90739 1.50525 1.69617 1.34810 1.21643 1.00147 0.94220 1.00046 1.21306 1.00170 0.95445 0.96171 1.22087 0.96458 0.87094 0.90398 0.90742 1.22216 1.00880 0.98919 0.97149 1.21600 0.98974 0.94824 1.00471 1.22197 1.01761 0.99240 0.96216 1.22732 0.96071 0.86554 0.96780 1.87923 1.49260 1.25908 1.68654 0.97356 0.96191 0.96844 0.94738 0.92503 0.95594 0.92372 0.93990 0.92056 0.91405 0.87774 0.91786 0.90684 0.86664 0.86976 0.86726 0.90757 0.92756 0.90415 0.92401 0.90824 0.91029 0.89287 0.92200 0.91989 0.88051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.19 10.59 9.00 127.77 1.15 11.73 16 2 N -0.63 -34.68 2.79 -726.94 -2.03 -36.71 16 3 C -0.23 -13.23 7.49 84.03 0.63 -12.60 16 4 H 0.07 4.01 7.69 -2.91 -0.02 3.99 16 5 C -0.07 -3.89 5.46 84.86 0.46 -3.43 16 6 N -0.95 -58.53 9.44 21.65 0.20 -58.33 16 7 Si 0.97 47.05 29.56 68.60 2.03 49.08 16 8 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 9 H -0.29 -13.92 7.11 99.48 0.71 -13.22 16 10 H -0.30 -14.46 7.11 99.48 0.71 -13.75 16 11 C 0.18 8.49 3.71 86.38 0.32 8.81 16 12 C 0.14 5.28 3.21 44.97 0.14 5.42 16 13 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 14 C -0.11 -4.13 4.33 30.67 0.13 -4.00 16 15 C -0.12 -3.14 5.88 30.62 0.18 -2.96 16 16 C -0.13 -2.35 6.08 30.67 0.19 -2.16 16 17 C 0.10 1.96 6.34 86.36 0.55 2.51 16 18 N -0.61 -18.15 2.98 -794.93 -2.37 -20.52 16 19 C 0.50 15.49 7.53 87.66 0.66 16.15 16 20 O -0.58 -23.54 11.54 -3.02 -0.03 -23.57 16 21 C -0.12 -2.46 3.95 29.85 0.12 -2.34 16 22 C -0.09 -2.03 4.21 30.60 0.13 -1.90 16 23 C 0.10 1.62 2.64 30.63 0.08 1.70 16 24 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 25 C -0.15 -2.39 5.42 30.68 0.17 -2.23 16 26 C -0.12 -1.40 6.03 30.71 0.19 -1.21 16 27 C -0.16 -1.70 6.14 30.68 0.19 -1.52 16 28 C 0.05 0.65 6.84 72.01 0.49 1.14 16 29 O -0.40 -7.14 9.94 -148.98 -1.48 -8.62 16 30 H 0.01 0.40 7.71 -2.39 -0.02 0.39 16 31 H 0.02 1.20 6.93 -2.38 -0.02 1.18 16 32 H 0.01 0.78 7.15 -2.39 -0.02 0.76 16 33 H 0.24 14.53 8.31 -92.72 -0.77 13.76 16 34 H 0.06 2.88 5.90 -2.39 -0.01 2.86 16 35 H 0.03 1.33 7.16 -2.39 -0.02 1.31 16 36 H 0.06 2.66 6.50 -2.39 -0.02 2.65 16 37 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 38 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 39 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 40 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 41 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 42 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 43 H 0.12 1.45 5.94 -2.39 -0.01 1.44 16 44 H 0.11 1.96 7.40 -2.39 -0.02 1.94 16 45 H 0.11 1.72 7.92 -2.39 -0.02 1.70 16 46 H 0.07 1.76 8.10 -2.39 -0.02 1.74 16 47 H 0.05 1.45 8.10 -2.39 -0.02 1.43 16 48 H 0.08 1.14 8.14 -2.38 -0.02 1.12 16 49 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 50 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 51 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 52 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 53 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 54 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 55 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 Total: -1.00 -73.79 406.95 2.92 -70.87 By element: Atomic # 1 Polarization: 13.87 SS G_CDS: 0.83 Total: 14.70 kcal Atomic # 6 Polarization: 7.34 SS G_CDS: 5.77 Total: 13.11 kcal Atomic # 7 Polarization: -111.36 SS G_CDS: -4.19 Total: -115.56 kcal Atomic # 8 Polarization: -30.68 SS G_CDS: -1.52 Total: -32.20 kcal Atomic # 14 Polarization: 47.05 SS G_CDS: 2.03 Total: 49.08 kcal Total: -73.79 2.92 -70.87 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158541563.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.548 kcal (2) G-P(sol) polarization free energy of solvation -73.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds