Wall clock time and date at job start Tue Mar 31 2020 22:19:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36935 * 120.00216 * 2 1 4 4 H 1.08003 * 119.99915 * 144.71342 * 3 2 1 5 5 C 1.38812 * 119.99810 * 324.70591 * 3 2 1 6 6 N 1.31628 * 119.99553 * 170.85477 * 5 3 2 7 7 Si 1.86797 * 120.00355 * 350.85924 * 5 3 2 8 8 H 1.48501 * 109.47148 * 87.69441 * 7 5 3 9 9 H 1.48497 * 109.47209 * 207.69536 * 7 5 3 10 10 H 1.48499 * 109.46869 * 327.69848 * 7 5 3 11 11 C 1.46499 * 119.99777 * 180.02562 * 2 1 3 12 12 C 1.52999 * 109.47337 * 92.99143 * 11 2 1 13 13 H 1.09001 * 109.70559 * 300.17975 * 12 11 2 14 14 C 1.53627 * 109.66396 * 60.77160 * 12 11 2 15 15 C 1.53043 * 109.24346 * 174.54731 * 14 12 11 16 16 C 1.53035 * 109.53969 * 298.51350 * 15 14 12 17 17 C 1.53192 * 109.31540 * 61.36295 * 16 15 14 18 18 N 1.46924 * 109.58808 * 179.82202 * 12 11 2 19 19 C 1.34783 * 120.63172 * 6.63296 * 18 12 11 20 20 O 1.21279 * 119.99254 * 354.76372 * 19 18 12 21 21 C 1.50691 * 120.00039 * 174.77156 * 19 18 12 22 22 C 1.52999 * 109.46956 * 179.97438 * 21 19 18 23 23 C 1.53008 * 109.47229 * 179.97438 * 22 21 19 24 24 C 1.53177 * 109.54365 * 184.99842 * 23 22 21 25 25 C 1.53085 * 109.16432 * 183.15012 * 24 23 22 26 26 O 1.42904 * 109.41283 * 57.60818 * 25 24 23 27 27 C 1.42900 * 114.10190 * 298.84432 * 26 25 24 28 28 C 1.53090 * 109.41460 * 61.15511 * 27 26 25 29 29 H 1.08993 * 109.47801 * 234.59502 * 1 2 3 30 30 H 1.09008 * 109.47102 * 354.60036 * 1 2 3 31 31 H 1.09003 * 109.47445 * 114.59533 * 1 2 3 32 32 H 0.97003 * 119.99445 * 180.02562 * 6 5 3 33 33 H 1.09005 * 109.47244 * 332.99268 * 11 2 1 34 34 H 1.09000 * 109.47126 * 212.99565 * 11 2 1 35 35 H 1.08997 * 109.63469 * 54.55736 * 14 12 11 36 36 H 1.08995 * 109.45671 * 294.43274 * 14 12 11 37 37 H 1.08995 * 109.45950 * 178.49182 * 15 14 12 38 38 H 1.09001 * 109.44608 * 58.52886 * 15 14 12 39 39 H 1.09005 * 109.50010 * 301.41241 * 16 15 14 40 40 H 1.09001 * 109.49812 * 181.31247 * 16 15 14 41 41 H 1.09001 * 109.58921 * 185.58108 * 17 16 15 42 42 H 1.09001 * 109.70641 * 65.22238 * 17 16 15 43 43 H 1.09000 * 109.47364 * 59.99880 * 21 19 18 44 44 H 1.08999 * 109.47189 * 299.99481 * 21 19 18 45 45 H 1.09004 * 109.47369 * 59.99759 * 22 21 19 46 46 H 1.09004 * 109.47439 * 300.00058 * 22 21 19 47 47 H 1.09000 * 109.61409 * 305.22122 * 23 22 21 48 48 H 1.09003 * 109.51907 * 63.24623 * 24 23 22 49 49 H 1.09000 * 109.57749 * 303.09472 * 24 23 22 50 50 H 1.09001 * 109.48140 * 177.59121 * 25 24 23 51 51 H 1.09001 * 109.48242 * 297.62605 * 25 24 23 52 52 H 1.08997 * 109.47634 * 301.17471 * 27 26 25 53 53 H 1.08998 * 109.48221 * 181.14110 * 27 26 25 54 54 H 1.09000 * 109.52489 * 182.48793 * 28 27 26 55 55 H 1.09004 * 109.52194 * 62.29937 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.0809 1.2717 0.5403 5 6 1.6470 2.2775 -0.6946 6 7 2.2032 3.4618 -0.5509 7 14 0.1813 2.0659 -1.8331 8 1 -1.0750 2.2327 -1.0589 9 1 0.2388 3.0875 -2.9093 10 1 0.2147 0.7093 -2.4360 11 6 2.1974 -1.2687 -0.0006 12 6 2.5176 -1.6722 -1.4413 13 1 1.5919 -1.7862 -2.0054 14 6 3.3954 -0.5952 -2.0968 15 6 3.8222 -1.0701 -3.4876 16 6 4.6483 -2.3519 -3.3596 17 6 3.7896 -3.4461 -2.7175 18 7 3.2560 -2.9424 -1.4445 19 6 3.4356 -3.6353 -0.3025 20 8 3.0697 -3.1670 0.7547 21 6 4.0912 -4.9917 -0.3393 22 6 4.1732 -5.5570 1.0800 23 6 4.8383 -6.9345 1.0427 24 6 4.8092 -7.5557 2.4426 25 6 5.5455 -8.8975 2.4123 26 8 6.8839 -8.6947 1.9545 27 6 6.9736 -8.1598 0.6324 28 6 6.2946 -6.7883 0.5911 29 1 -0.3634 -0.5953 0.8375 30 1 -0.3634 1.0232 0.0967 31 1 -0.3634 -0.4277 -0.9344 32 1 1.8516 4.2248 -1.0360 33 1 1.5861 -2.0414 0.4658 34 1 3.1255 -1.1527 0.5591 35 1 4.2801 -0.4211 -1.4844 36 1 2.8274 0.3307 -2.1869 37 1 4.4231 -0.2972 -3.9667 38 1 2.9364 -1.2677 -4.0913 39 1 5.5213 -2.1614 -2.7353 40 1 4.9716 -2.6767 -4.3486 41 1 4.4010 -4.3295 -2.5334 42 1 2.9655 -3.7043 -3.3825 43 1 5.0959 -4.8986 -0.7516 44 1 3.5025 -5.6629 -0.9646 45 1 3.1687 -5.6500 1.4928 46 1 4.7621 -4.8857 1.7052 47 1 4.3036 -7.5802 0.3461 48 1 3.7753 -7.7144 2.7492 49 1 5.3000 -6.8866 3.1493 50 1 5.5651 -9.3241 3.4152 51 1 5.0298 -9.5801 1.7368 52 1 6.4766 -8.8326 -0.0663 53 1 8.0220 -8.0549 0.3531 54 1 6.3231 -6.3982 -0.4262 55 1 6.8163 -6.1033 1.2597 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001158554790.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:12 Heat of formation + Delta-G solvation = -83.936570 kcal Electronic energy + Delta-G solvation = -31490.532835 eV Core-core repulsion = 27527.075387 eV Total energy + Delta-G solvation = -3963.457448 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.56621 -40.29984 -38.58546 -37.49921 -36.34951 -33.99328 -33.84212 -32.67310 -32.00647 -31.44247 -28.48187 -27.92525 -26.98052 -25.50981 -24.44030 -24.13991 -23.10027 -21.98597 -21.54456 -20.85897 -19.82874 -18.87136 -17.86951 -17.23388 -17.03820 -16.91304 -16.83991 -16.69704 -15.76729 -15.68985 -15.48958 -15.42572 -15.16897 -14.98502 -14.89418 -14.70980 -14.43327 -14.17224 -14.12064 -13.96665 -13.61661 -13.36122 -13.18963 -13.10026 -13.03124 -12.77053 -12.45641 -12.23650 -12.18423 -12.09322 -12.01215 -11.92547 -11.81675 -11.70208 -11.63566 -11.47126 -11.31292 -11.18497 -11.11065 -10.86802 -10.39380 -10.13485 -9.43511 -8.79137 -8.15102 -5.59439 1.28810 1.37127 1.48280 1.75430 2.07006 2.40089 3.04647 3.14177 3.37675 3.60644 3.74538 3.82766 3.90406 3.96006 4.00204 4.10735 4.13379 4.18727 4.29704 4.30290 4.38226 4.42692 4.46345 4.47383 4.54365 4.62420 4.65918 4.66909 4.70893 4.75528 4.83892 4.85365 4.86636 4.88269 4.93247 4.97824 5.02943 5.04797 5.11308 5.12117 5.21204 5.23603 5.25733 5.32063 5.36960 5.39802 5.54199 5.55507 5.76861 5.93033 6.13521 6.34290 6.60220 6.93794 7.33487 7.62686 8.02577 9.05022 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.019480 B = 0.002669 C = 0.002492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1437.061538 B =10487.317291 C =11232.232120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.629 5.629 3 C -0.236 4.236 4 H 0.032 0.968 5 C -0.030 4.030 6 N -0.965 5.965 7 Si 0.958 3.042 8 H -0.277 1.277 9 H -0.312 1.312 10 H -0.250 1.250 11 C 0.181 3.819 12 C 0.135 3.865 13 H 0.059 0.941 14 C -0.113 4.113 15 C -0.121 4.121 16 C -0.127 4.127 17 C 0.103 3.897 18 N -0.609 5.609 19 C 0.496 3.504 20 O -0.578 6.578 21 C -0.127 4.127 22 C -0.092 4.092 23 C -0.082 4.082 24 C -0.153 4.153 25 C 0.060 3.940 26 O -0.411 6.411 27 C 0.056 3.944 28 C -0.152 4.152 29 H 0.042 0.958 30 H 0.048 0.952 31 H 0.032 0.968 32 H 0.262 0.738 33 H 0.063 0.937 34 H 0.028 0.972 35 H 0.032 0.968 36 H 0.054 0.946 37 H 0.060 0.940 38 H 0.066 0.934 39 H 0.057 0.943 40 H 0.106 0.894 41 H 0.120 0.880 42 H 0.083 0.917 43 H 0.115 0.885 44 H 0.122 0.878 45 H 0.056 0.944 46 H 0.044 0.956 47 H 0.092 0.908 48 H 0.080 0.920 49 H 0.054 0.946 50 H 0.097 0.903 51 H 0.064 0.936 52 H 0.066 0.934 53 H 0.099 0.901 54 H 0.095 0.905 55 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.095 -28.744 -6.819 30.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.356 5.356 3 C -0.366 4.366 4 H 0.050 0.950 5 C -0.224 4.224 6 N -0.611 5.611 7 Si 0.787 3.213 8 H -0.204 1.204 9 H -0.241 1.241 10 H -0.174 1.174 11 C 0.056 3.944 12 C 0.030 3.970 13 H 0.077 0.923 14 C -0.152 4.152 15 C -0.158 4.158 16 C -0.164 4.164 17 C -0.018 4.018 18 N -0.342 5.342 19 C 0.287 3.713 20 O -0.458 6.458 21 C -0.166 4.166 22 C -0.130 4.130 23 C -0.100 4.100 24 C -0.191 4.191 25 C -0.017 4.017 26 O -0.331 6.331 27 C -0.020 4.020 28 C -0.190 4.190 29 H 0.061 0.939 30 H 0.066 0.934 31 H 0.050 0.950 32 H 0.070 0.930 33 H 0.081 0.919 34 H 0.047 0.953 35 H 0.051 0.949 36 H 0.073 0.927 37 H 0.079 0.921 38 H 0.085 0.915 39 H 0.075 0.925 40 H 0.124 0.876 41 H 0.138 0.862 42 H 0.101 0.899 43 H 0.133 0.867 44 H 0.140 0.860 45 H 0.074 0.926 46 H 0.062 0.938 47 H 0.110 0.890 48 H 0.099 0.901 49 H 0.073 0.927 50 H 0.115 0.885 51 H 0.083 0.917 52 H 0.084 0.916 53 H 0.117 0.883 54 H 0.113 0.887 55 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 6.059 -28.428 -6.183 29.717 hybrid contribution -0.843 1.433 -0.122 1.667 sum 5.215 -26.995 -6.304 28.208 Atomic orbital electron populations 1.21534 0.84144 1.00076 0.99088 1.44576 1.01415 1.02771 1.86798 1.18555 1.05479 0.88384 1.24201 0.94980 1.26088 1.01588 0.95240 0.99482 1.69918 1.44867 1.00253 1.46033 0.85826 0.79509 0.77488 0.78494 1.20373 1.24115 1.17389 1.21316 0.95319 0.84984 0.92779 1.21885 0.93243 0.82956 0.98956 0.92313 1.21802 0.98526 0.98276 0.96567 1.21576 1.00350 0.98490 0.95410 1.21894 0.97809 0.94322 1.02421 1.22074 0.98499 0.97584 0.83684 1.48492 1.54865 1.21721 1.09164 1.21612 0.78727 0.88258 0.82753 1.90758 1.52281 1.70747 1.31964 1.21789 1.03026 0.91637 1.00128 1.21282 1.00718 0.95734 0.95277 1.21184 0.95992 0.95710 0.97113 1.22243 1.01606 0.97718 0.97536 1.22671 0.82479 0.95775 1.00744 1.87901 1.27777 1.84391 1.32991 1.22739 1.02064 0.93600 0.83594 1.22321 0.95434 0.98130 1.03113 0.93941 0.93384 0.95031 0.92957 0.91891 0.95331 0.94945 0.92743 0.92134 0.91527 0.92454 0.87563 0.86236 0.89889 0.86733 0.86009 0.92555 0.93761 0.88972 0.90143 0.92750 0.88512 0.91746 0.91621 0.88284 0.88662 0.92768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 4.33 8.38 127.77 1.07 5.40 16 2 N -0.63 -32.14 2.50 -726.94 -1.81 -33.96 16 3 C -0.24 -14.06 7.95 84.03 0.67 -13.40 16 4 H 0.03 2.19 8.06 -2.91 -0.02 2.16 16 5 C -0.03 -1.78 5.07 84.86 0.43 -1.35 16 6 N -0.96 -62.22 13.97 21.65 0.30 -61.92 16 7 Si 0.96 47.40 23.74 68.60 1.63 49.03 16 8 H -0.28 -13.07 6.57 99.48 0.65 -12.42 16 9 H -0.31 -15.61 7.11 99.48 0.71 -14.90 16 10 H -0.25 -11.45 6.32 99.48 0.63 -10.82 16 11 C 0.18 8.23 3.70 86.38 0.32 8.55 16 12 C 0.14 5.04 3.21 45.12 0.15 5.19 16 13 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 14 C -0.11 -4.46 4.56 30.82 0.14 -4.32 16 15 C -0.12 -3.36 5.88 30.62 0.18 -3.18 16 16 C -0.13 -2.40 6.08 30.67 0.19 -2.21 16 17 C 0.10 1.74 6.33 86.36 0.55 2.28 16 18 N -0.61 -16.84 2.97 -794.20 -2.36 -19.20 16 19 C 0.50 14.06 7.61 87.65 0.67 14.72 16 20 O -0.58 -22.30 11.38 -3.03 -0.03 -22.33 16 21 C -0.13 -2.05 3.86 29.85 0.12 -1.94 16 22 C -0.09 -1.72 3.98 30.60 0.12 -1.60 16 23 C -0.08 -1.06 2.27 -10.67 -0.02 -1.09 16 24 C -0.15 -2.22 5.42 30.68 0.17 -2.05 16 25 C 0.06 0.78 6.84 72.01 0.49 1.28 16 26 O -0.41 -7.14 10.77 -148.98 -1.60 -8.75 16 27 C 0.06 0.67 6.84 72.01 0.49 1.16 16 28 C -0.15 -1.85 5.10 30.68 0.16 -1.69 16 29 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 30 H 0.05 2.30 4.49 -2.38 -0.01 2.29 16 31 H 0.03 1.31 6.73 -2.39 -0.02 1.29 16 32 H 0.26 15.98 8.31 -92.71 -0.77 15.21 16 33 H 0.06 2.85 6.36 -2.38 -0.02 2.84 16 34 H 0.03 1.47 6.95 -2.39 -0.02 1.46 16 35 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.05 2.61 5.82 -2.39 -0.01 2.60 16 37 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 38 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 39 H 0.06 1.21 8.14 -2.38 -0.02 1.19 16 40 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 41 H 0.12 1.09 5.96 -2.39 -0.01 1.08 16 42 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 43 H 0.11 1.34 6.00 -2.39 -0.01 1.32 16 44 H 0.12 1.23 8.11 -2.39 -0.02 1.22 16 45 H 0.06 1.22 8.10 -2.38 -0.02 1.20 16 46 H 0.04 1.07 8.10 -2.39 -0.02 1.05 16 47 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 48 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 49 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 50 H 0.10 1.12 8.14 -2.39 -0.02 1.11 16 51 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 52 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 53 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 54 H 0.09 0.76 6.75 -2.39 -0.02 0.74 16 55 H 0.05 0.88 8.14 -2.38 -0.02 0.86 16 Total: -1.00 -78.51 398.43 2.71 -75.80 By element: Atomic # 1 Polarization: 14.86 SS G_CDS: 0.71 Total: 15.57 kcal Atomic # 6 Polarization: -0.12 SS G_CDS: 5.88 Total: 5.75 kcal Atomic # 7 Polarization: -111.21 SS G_CDS: -3.87 Total: -115.07 kcal Atomic # 8 Polarization: -29.44 SS G_CDS: -1.64 Total: -31.08 kcal Atomic # 14 Polarization: 47.40 SS G_CDS: 1.63 Total: 49.03 kcal Total: -78.51 2.71 -75.80 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158554790.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.134 kcal (2) G-P(sol) polarization free energy of solvation -78.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds