Wall clock time and date at job start Tue Mar 31 2020 22:19:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36944 * 119.99979 * 2 1 4 4 H 1.07996 * 119.99854 * 200.19300 * 3 2 1 5 5 C 1.38813 * 119.99539 * 20.18483 * 3 2 1 6 6 N 1.31619 * 120.00380 * 12.77416 * 5 3 2 7 7 Si 1.86800 * 119.99498 * 192.76904 * 5 3 2 8 8 H 1.48495 * 109.47539 * 5.01798 * 7 5 3 9 9 H 1.48507 * 109.46866 * 125.01796 * 7 5 3 10 10 H 1.48498 * 109.47135 * 245.01414 * 7 5 3 11 11 C 1.46494 * 120.00413 * 180.02562 * 2 1 3 12 12 C 1.53000 * 109.47293 * 264.24420 * 11 2 1 13 13 H 1.08992 * 109.58259 * 301.53040 * 12 11 2 14 14 C 1.53191 * 109.70215 * 61.89855 * 12 11 2 15 15 C 1.53040 * 109.31555 * 174.50599 * 14 12 11 16 16 C 1.53041 * 109.52628 * 298.61738 * 15 14 12 17 17 C 1.53191 * 109.31348 * 61.36791 * 16 15 14 18 18 N 1.46924 * 109.58750 * 181.24485 * 12 11 2 19 19 C 1.34777 * 120.63052 * 6.48204 * 18 12 11 20 20 O 1.21280 * 120.00109 * 355.01297 * 19 18 12 21 21 C 1.50700 * 119.99829 * 175.00933 * 19 18 12 22 22 C 1.53007 * 109.47144 * 184.71669 * 21 19 18 23 23 C 1.52998 * 109.46824 * 180.02562 * 22 21 19 24 24 H 1.08999 * 109.52444 * 304.87089 * 23 22 21 25 25 C 1.53184 * 109.51728 * 184.68812 * 23 22 21 26 26 C 1.53177 * 109.03431 * 183.11279 * 25 23 22 27 27 C 1.53096 * 109.16317 * 56.97869 * 26 25 23 28 28 O 1.42903 * 109.41554 * 302.38922 * 27 26 25 29 29 C 1.42904 * 114.09314 * 61.15910 * 28 27 26 30 30 H 1.09007 * 109.47309 * 275.28268 * 1 2 3 31 31 H 1.08996 * 109.47592 * 35.28561 * 1 2 3 32 32 H 1.09002 * 109.47153 * 155.28741 * 1 2 3 33 33 H 0.96998 * 119.99733 * 179.97438 * 6 5 3 34 34 H 1.08997 * 109.47621 * 144.24269 * 11 2 1 35 35 H 1.09004 * 109.46912 * 24.24260 * 11 2 1 36 36 H 1.09003 * 109.50923 * 54.55002 * 14 12 11 37 37 H 1.08997 * 109.48792 * 294.45220 * 14 12 11 38 38 H 1.09001 * 109.46357 * 178.59746 * 15 14 12 39 39 H 1.09002 * 109.46034 * 58.62558 * 15 14 12 40 40 H 1.09003 * 109.49859 * 181.32040 * 16 15 14 41 41 H 1.09002 * 109.49545 * 301.38296 * 16 15 14 42 42 H 1.08996 * 109.58989 * 65.15322 * 17 16 15 43 43 H 1.09003 * 109.58261 * 185.43558 * 17 16 15 44 44 H 1.08999 * 109.47680 * 304.71534 * 21 19 18 45 45 H 1.09008 * 109.47271 * 64.71979 * 21 19 18 46 46 H 1.08997 * 109.46580 * 300.06453 * 22 21 19 47 47 H 1.08998 * 109.47023 * 60.06341 * 22 21 19 48 48 H 1.09007 * 109.54019 * 302.97596 * 25 23 22 49 49 H 1.08996 * 109.54383 * 63.24541 * 25 23 22 50 50 H 1.08997 * 109.52083 * 297.07014 * 26 25 23 51 51 H 1.09002 * 109.57157 * 176.90988 * 26 25 23 52 52 H 1.08995 * 109.47642 * 182.40677 * 27 26 25 53 53 H 1.08996 * 109.47973 * 62.37472 * 27 26 25 54 54 H 1.09003 * 109.47524 * 178.85887 * 29 28 27 55 55 H 1.08998 * 109.48871 * 58.83574 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1799 1.2147 -0.3228 5 6 1.5195 2.3512 0.4148 6 7 0.3629 2.2872 1.0398 7 14 2.3130 4.0100 0.0861 8 1 3.5380 3.8195 -0.7313 9 1 1.3582 4.8787 -0.6481 10 1 2.6736 4.6506 1.3764 11 6 2.1975 -1.2686 -0.0006 12 6 2.5779 -1.6386 1.4345 13 1 3.1852 -0.8441 1.8678 14 6 1.3095 -1.8306 2.2718 15 6 1.6940 -2.3328 3.6653 16 6 2.4020 -3.6843 3.5447 17 6 3.6828 -3.5136 2.7217 18 7 3.3386 -2.8956 1.4339 19 6 3.7139 -3.4706 0.2742 20 8 3.3476 -3.0006 -0.7821 21 6 4.5888 -4.6975 0.2900 22 6 4.9620 -5.0764 -1.1447 23 6 5.8497 -6.3224 -1.1285 24 1 6.7146 -6.1452 -0.4893 25 6 6.3196 -6.6345 -2.5527 26 6 7.1423 -7.9264 -2.5355 27 6 6.2938 -9.0547 -1.9432 28 8 5.8641 -8.6872 -0.6308 29 6 5.0511 -7.5126 -0.5907 30 1 -0.3634 0.0946 1.0233 31 1 -0.3634 0.8388 -0.5936 32 1 -0.3633 -0.9336 -0.4296 33 1 -0.0772 3.1014 1.3300 34 1 3.1014 -1.1661 -0.6010 35 1 1.5677 -2.0517 -0.4229 36 1 0.6610 -2.5611 1.7880 37 1 0.7845 -0.8795 2.3599 38 1 0.7951 -2.4466 4.2713 39 1 2.3625 -1.6137 4.1388 40 1 2.6548 -4.0526 4.5389 41 1 1.7430 -4.3973 3.0493 42 1 4.3803 -2.8719 3.2600 43 1 4.1400 -4.4882 2.5511 44 1 5.4955 -4.4901 0.8584 45 1 4.0492 -5.5226 0.7551 46 1 4.0553 -5.2828 -1.7133 47 1 5.5025 -4.2518 -1.6093 48 1 5.4537 -6.7622 -3.2026 49 1 6.9359 -5.8145 -2.9212 50 1 8.0339 -7.7823 -1.9253 51 1 7.4351 -8.1864 -3.5528 52 1 6.8885 -9.9666 -1.8890 53 1 5.4231 -9.2255 -2.5763 54 1 4.7506 -7.3137 0.4380 55 1 4.1641 -7.6632 -1.2059 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001158667048.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:41 Heat of formation + Delta-G solvation = -84.382612 kcal Electronic energy + Delta-G solvation = -31289.577367 eV Core-core repulsion = 27326.100576 eV Total energy + Delta-G solvation = -3963.476790 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.54479 -40.32757 -38.50803 -37.31192 -36.05314 -34.12641 -33.68910 -33.41582 -31.81364 -30.44727 -28.32532 -27.65308 -26.24698 -25.92932 -25.27194 -23.88804 -22.81397 -22.01592 -21.47874 -20.96788 -19.73623 -18.81790 -17.76660 -17.32935 -17.02298 -16.96533 -16.58345 -16.41041 -15.79246 -15.51336 -15.42656 -15.35885 -15.08296 -14.94126 -14.81847 -14.53959 -14.33954 -14.16099 -13.93446 -13.59532 -13.52136 -13.31364 -13.15820 -12.82705 -12.76928 -12.58692 -12.56162 -12.39536 -12.17760 -12.08088 -12.04667 -12.00338 -11.83627 -11.72480 -11.64829 -11.51232 -11.41965 -11.38800 -11.12085 -10.66777 -10.34028 -10.10468 -9.41658 -8.76882 -7.81493 -5.27412 1.42692 1.44382 1.55130 1.76843 2.09399 2.51491 3.00194 3.29759 3.57623 3.72999 3.82563 3.84181 3.93461 3.95505 3.97760 4.05542 4.09713 4.19175 4.28558 4.33498 4.36831 4.42499 4.50578 4.56903 4.61256 4.64775 4.71004 4.72019 4.78565 4.80705 4.86086 4.89610 4.93985 4.97319 5.04462 5.08437 5.11322 5.14910 5.18146 5.21991 5.26953 5.27750 5.30033 5.31921 5.39063 5.48530 5.49299 5.60620 5.71971 5.80793 6.30345 6.31753 6.64089 7.15770 7.35414 7.90138 8.33587 9.21379 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.015544 B = 0.002642 C = 0.002390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1800.857124 B =10594.686736 C =11714.583243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.183 3.817 2 N -0.619 5.619 3 C -0.257 4.257 4 H 0.059 0.941 5 C -0.051 4.051 6 N -0.935 5.935 7 Si 0.966 3.034 8 H -0.273 1.273 9 H -0.290 1.290 10 H -0.287 1.287 11 C 0.180 3.820 12 C 0.137 3.863 13 H 0.041 0.959 14 C -0.111 4.111 15 C -0.116 4.116 16 C -0.125 4.125 17 C 0.100 3.900 18 N -0.608 5.608 19 C 0.496 3.504 20 O -0.576 6.576 21 C -0.129 4.129 22 C -0.090 4.090 23 C -0.112 4.112 24 H 0.085 0.915 25 C -0.123 4.123 26 C -0.152 4.152 27 C 0.053 3.947 28 O -0.401 6.401 29 C 0.061 3.939 30 H 0.014 0.986 31 H 0.015 0.985 32 H 0.013 0.987 33 H 0.248 0.752 34 H 0.043 0.957 35 H 0.041 0.959 36 H 0.048 0.952 37 H 0.047 0.953 38 H 0.069 0.931 39 H 0.055 0.945 40 H 0.104 0.896 41 H 0.066 0.934 42 H 0.072 0.928 43 H 0.120 0.880 44 H 0.115 0.885 45 H 0.119 0.881 46 H 0.056 0.944 47 H 0.054 0.946 48 H 0.060 0.940 49 H 0.066 0.934 50 H 0.070 0.930 51 H 0.085 0.915 52 H 0.105 0.895 53 H 0.052 0.948 54 H 0.108 0.892 55 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.121 -24.579 2.227 27.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 N -0.343 5.343 3 C -0.388 4.388 4 H 0.077 0.923 5 C -0.246 4.246 6 N -0.582 5.582 7 Si 0.794 3.206 8 H -0.198 1.198 9 H -0.217 1.217 10 H -0.214 1.214 11 C 0.055 3.945 12 C 0.031 3.969 13 H 0.060 0.940 14 C -0.150 4.150 15 C -0.154 4.154 16 C -0.162 4.162 17 C -0.021 4.021 18 N -0.342 5.342 19 C 0.287 3.713 20 O -0.456 6.456 21 C -0.169 4.169 22 C -0.128 4.128 23 C -0.131 4.131 24 H 0.104 0.896 25 C -0.160 4.160 26 C -0.189 4.189 27 C -0.023 4.023 28 O -0.320 6.320 29 C -0.016 4.016 30 H 0.032 0.968 31 H 0.034 0.966 32 H 0.032 0.968 33 H 0.057 0.943 34 H 0.061 0.939 35 H 0.059 0.941 36 H 0.067 0.933 37 H 0.066 0.934 38 H 0.087 0.913 39 H 0.074 0.926 40 H 0.123 0.877 41 H 0.085 0.915 42 H 0.090 0.910 43 H 0.138 0.862 44 H 0.133 0.867 45 H 0.137 0.863 46 H 0.075 0.925 47 H 0.073 0.927 48 H 0.079 0.921 49 H 0.085 0.915 50 H 0.089 0.911 51 H 0.103 0.897 52 H 0.123 0.877 53 H 0.070 0.930 54 H 0.126 0.874 55 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 11.887 -24.334 1.875 27.147 hybrid contribution -0.242 1.897 -0.493 1.975 sum 11.645 -22.437 1.382 25.317 Atomic orbital electron populations 1.20548 0.82944 0.94907 0.97847 1.44484 1.02141 1.01970 1.85721 1.19432 0.96561 0.86483 1.36293 0.92319 1.25667 0.98401 1.01282 0.99219 1.70231 1.18415 1.26888 1.42665 0.85226 0.77766 0.80253 0.77323 1.19783 1.21694 1.21394 1.21308 0.95170 0.85390 0.92673 1.21823 0.91964 0.84126 0.99023 0.94040 1.21719 0.96506 1.00315 0.96460 1.21511 1.00841 0.97841 0.95213 1.21889 0.96506 0.96283 1.01563 1.22059 0.97508 0.99830 0.82744 1.48487 1.54595 1.23837 1.07241 1.21549 0.80777 0.86142 0.82864 1.90760 1.57415 1.64703 1.32681 1.21816 1.00212 0.94796 1.00032 1.21224 0.99483 0.96893 0.95242 1.21732 0.99086 0.94485 0.97792 0.89627 1.21670 1.00075 0.98078 0.96213 1.22167 0.99131 0.95188 1.02431 1.22739 0.97981 0.97839 0.83773 1.87906 1.70077 1.44796 1.29241 1.22809 0.92188 0.83773 1.02788 0.96762 0.96642 0.96842 0.94285 0.93894 0.94100 0.93304 0.93388 0.91251 0.92626 0.87740 0.91491 0.90950 0.86230 0.86723 0.86306 0.92498 0.92690 0.92102 0.91485 0.91128 0.89684 0.87735 0.92985 0.87366 0.93295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.82 8.17 127.77 1.04 10.86 16 2 N -0.62 -34.01 2.61 -726.95 -1.90 -35.90 16 3 C -0.26 -15.17 9.68 84.03 0.81 -14.35 16 4 H 0.06 3.47 7.86 -2.91 -0.02 3.45 16 5 C -0.05 -2.97 5.11 84.86 0.43 -2.54 16 6 N -0.93 -56.58 10.53 21.65 0.23 -56.35 16 7 Si 0.97 47.07 29.57 68.60 2.03 49.10 16 8 H -0.27 -12.90 7.11 99.48 0.71 -12.19 16 9 H -0.29 -14.06 7.11 99.48 0.71 -13.35 16 10 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 11 C 0.18 8.62 3.60 86.38 0.31 8.93 16 12 C 0.14 5.43 3.15 44.97 0.14 5.57 16 13 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 14 C -0.11 -4.14 4.76 30.67 0.15 -4.00 16 15 C -0.12 -3.14 5.88 30.62 0.18 -2.96 16 16 C -0.12 -2.30 6.08 30.67 0.19 -2.11 16 17 C 0.10 1.88 6.29 86.36 0.54 2.42 16 18 N -0.61 -17.89 2.97 -795.04 -2.36 -20.25 16 19 C 0.50 14.73 7.60 87.66 0.67 15.40 16 20 O -0.58 -22.83 11.39 -3.03 -0.03 -22.87 16 21 C -0.13 -2.28 3.82 29.85 0.11 -2.16 16 22 C -0.09 -1.74 3.99 30.60 0.12 -1.62 16 23 C -0.11 -1.66 2.39 -10.70 -0.03 -1.68 16 24 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 25 C -0.12 -1.79 5.31 30.72 0.16 -1.63 16 26 C -0.15 -1.80 6.14 30.69 0.19 -1.62 16 27 C 0.05 0.67 6.84 72.01 0.49 1.17 16 28 O -0.40 -6.80 10.77 -148.98 -1.60 -8.40 16 29 C 0.06 0.87 5.82 72.01 0.42 1.29 16 30 H 0.01 0.80 6.23 -2.38 -0.01 0.79 16 31 H 0.01 0.87 7.15 -2.39 -0.02 0.85 16 32 H 0.01 0.64 7.78 -2.39 -0.02 0.62 16 33 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 34 H 0.04 2.24 6.28 -2.39 -0.02 2.22 16 35 H 0.04 1.99 6.77 -2.38 -0.02 1.97 16 36 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 37 H 0.05 2.21 6.33 -2.39 -0.02 2.19 16 38 H 0.07 1.72 8.14 -2.39 -0.02 1.71 16 39 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 40 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 41 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 42 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 43 H 0.12 1.31 6.02 -2.39 -0.01 1.29 16 44 H 0.11 1.50 7.93 -2.39 -0.02 1.49 16 45 H 0.12 1.44 6.20 -2.38 -0.01 1.42 16 46 H 0.06 1.29 8.05 -2.39 -0.02 1.27 16 47 H 0.05 1.27 8.14 -2.39 -0.02 1.26 16 48 H 0.06 0.94 8.14 -2.38 -0.02 0.92 16 49 H 0.07 1.00 8.14 -2.39 -0.02 0.99 16 50 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 51 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 52 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 53 H 0.05 0.62 8.14 -2.39 -0.02 0.61 16 54 H 0.11 1.20 6.69 -2.39 -0.02 1.19 16 55 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 Total: -1.00 -73.98 405.67 3.13 -70.84 By element: Atomic # 1 Polarization: 12.02 SS G_CDS: 0.84 Total: 12.86 kcal Atomic # 6 Polarization: 5.03 SS G_CDS: 5.94 Total: 10.97 kcal Atomic # 7 Polarization: -108.47 SS G_CDS: -4.03 Total: -112.50 kcal Atomic # 8 Polarization: -29.63 SS G_CDS: -1.64 Total: -31.27 kcal Atomic # 14 Polarization: 47.07 SS G_CDS: 2.03 Total: 49.10 kcal Total: -73.98 3.13 -70.84 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158667048.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.538 kcal (2) G-P(sol) polarization free energy of solvation -73.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds