Wall clock time and date at job start Tue Mar 31 2020 22:19:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42904 * 114.00225 * 2 1 4 4 H 1.08999 * 109.46860 * 29.99910 * 3 2 1 5 5 C 1.50702 * 109.47168 * 270.00225 * 3 2 1 6 6 O 1.21284 * 119.99779 * 354.99872 * 5 3 2 7 7 N 1.34775 * 119.99636 * 175.00007 * 5 3 2 8 8 C 1.46924 * 120.63390 * 354.59614 * 7 5 3 9 9 C 1.53192 * 108.77722 * 233.88275 * 8 7 5 10 10 C 1.53036 * 109.31358 * 305.36853 * 9 8 7 11 11 C 1.53041 * 109.53940 * 61.36492 * 10 9 8 12 12 C 1.46929 * 120.62553 * 174.88018 * 7 5 3 13 13 H 1.08993 * 109.58712 * 245.90397 * 12 7 5 14 14 C 1.52999 * 109.59019 * 6.18632 * 12 7 5 15 15 N 1.46500 * 109.47193 * 181.85889 * 14 12 7 16 16 C 1.46506 * 119.99833 * 84.72296 * 15 14 12 17 17 C 1.36935 * 120.00225 * 264.71784 * 15 14 12 18 18 H 1.08003 * 119.99594 * 11.03877 * 17 15 14 19 19 C 1.38807 * 120.00007 * 191.03852 * 17 15 14 20 20 N 1.31620 * 120.00086 * 12.66482 * 19 17 15 21 21 Si 1.86801 * 119.99847 * 192.65625 * 19 17 15 22 22 H 1.48499 * 109.46841 * 60.00536 * 21 19 17 23 23 H 1.48506 * 109.47131 * 179.97438 * 21 19 17 24 24 H 1.48496 * 109.47386 * 300.00143 * 21 19 17 25 25 C 1.52992 * 109.47117 * 149.99954 * 3 2 1 26 26 C 1.54273 * 110.03256 * 57.91033 * 25 3 2 27 27 C 1.54967 * 104.15870 * 217.13704 * 26 25 3 28 28 C 1.54885 * 102.77861 * 37.88781 * 27 26 25 29 29 C 1.53874 * 110.03518 * 300.69680 * 25 3 2 30 30 H 1.08997 * 109.47134 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.46844 * 300.00272 * 1 2 3 32 32 H 1.09003 * 109.47002 * 59.99256 * 1 2 3 33 33 H 1.09001 * 109.58625 * 353.67601 * 8 7 5 34 34 H 1.08998 * 109.58279 * 114.09379 * 8 7 5 35 35 H 1.08993 * 109.49807 * 185.41182 * 9 8 7 36 36 H 1.09001 * 109.51887 * 65.33240 * 9 8 7 37 37 H 1.09001 * 109.45954 * 301.34422 * 10 9 8 38 38 H 1.09003 * 109.44929 * 181.37574 * 10 9 8 39 39 H 1.09006 * 109.49541 * 178.68570 * 11 10 9 40 40 H 1.08998 * 109.52285 * 58.60479 * 11 10 9 41 41 H 1.09007 * 109.47085 * 301.86140 * 14 12 7 42 42 H 1.09000 * 109.47207 * 61.85973 * 14 12 7 43 43 H 1.09007 * 109.46949 * 354.75941 * 16 15 14 44 44 H 1.08997 * 109.47276 * 114.75595 * 16 15 14 45 45 H 1.08995 * 109.46627 * 234.76132 * 16 15 14 46 46 H 0.97002 * 120.00114 * 180.02562 * 20 19 17 47 47 H 1.08996 * 110.01816 * 179.30199 * 25 3 2 48 48 H 1.09005 * 110.48311 * 335.78059 * 26 25 3 49 49 H 1.08992 * 110.48722 * 98.42488 * 26 25 3 50 50 H 1.08999 * 110.71797 * 279.57129 * 27 26 25 51 51 H 1.09004 * 110.92043 * 156.29482 * 27 26 25 52 52 H 1.09001 * 110.48777 * 203.40522 * 28 27 26 53 53 H 1.09000 * 110.48725 * 80.76244 * 28 27 26 54 54 H 1.09004 * 110.02783 * 238.57076 * 29 25 3 55 55 H 1.09003 * 110.03173 * 359.94483 * 29 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3451 1.9994 0.5138 5 6 2.2146 1.7644 -1.4208 6 8 1.9792 1.0106 -2.3413 7 7 2.6590 3.0125 -1.6685 8 6 2.8360 3.9753 -0.5729 9 6 2.0578 5.2517 -0.9076 10 6 2.5008 5.7700 -2.2776 11 6 2.1898 4.7203 -3.3470 12 6 2.9697 3.4380 -3.0401 13 1 4.0388 3.6301 -3.1297 14 6 2.5620 2.3386 -4.0230 15 7 2.9134 2.7468 -5.3854 16 6 4.2672 2.5128 -5.8940 17 6 1.9764 3.3469 -6.1835 18 1 1.0406 3.6810 -5.7601 19 6 2.2292 3.5259 -7.5366 20 7 3.2432 2.9075 -8.1040 21 14 1.1303 4.6440 -8.5522 22 1 1.1730 6.0196 -7.9943 23 1 1.6094 4.6654 -9.9577 24 1 -0.2647 4.1366 -8.5120 25 6 3.3589 1.2632 0.7212 26 6 4.2934 0.2453 0.0352 27 6 5.0702 -0.4060 1.2074 28 6 3.9916 -0.5167 2.3135 29 6 3.1674 0.7792 2.1692 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5140 -0.8899 33 1 2.4552 3.5476 0.3545 34 1 3.8943 4.2112 -0.4613 35 1 2.2581 6.0091 -0.1498 36 1 0.9903 5.0322 -0.9294 37 1 3.5729 5.9663 -2.2623 38 1 1.9661 6.6917 -2.5072 39 1 2.4843 5.0997 -4.3256 40 1 1.1213 4.5054 -3.3466 41 1 3.0858 1.4157 -3.7736 42 1 1.4863 2.1745 -3.9589 43 1 4.8921 2.1153 -5.0942 44 1 4.2283 1.7966 -6.7147 45 1 4.6885 3.4524 -6.2513 46 1 3.4201 3.0329 -9.0495 47 1 3.8162 2.2526 0.7156 48 1 3.7122 -0.5052 -0.5007 49 1 4.9794 0.7535 -0.6423 50 1 5.8902 0.2354 1.5302 51 1 5.4402 -1.3927 0.9285 52 1 4.4579 -0.5647 3.2976 53 1 3.3615 -1.3902 2.1459 54 1 3.5325 1.5335 2.8664 55 1 2.1135 0.5753 2.3585 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001158801142.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:45 Heat of formation + Delta-G solvation = -65.499624 kcal Electronic energy + Delta-G solvation = -32767.785376 eV Core-core repulsion = 28805.127414 eV Total energy + Delta-G solvation = -3962.657962 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.92433 -39.75979 -38.31480 -37.51677 -37.33217 -34.15056 -33.73073 -32.05176 -31.15937 -29.54299 -28.16661 -28.00198 -27.53918 -26.46956 -25.30331 -23.96495 -22.19153 -22.00813 -21.50771 -20.62949 -20.10896 -18.77549 -17.93892 -17.75420 -17.20532 -16.80399 -16.56063 -16.36129 -15.87005 -15.65756 -15.44690 -15.27506 -15.17213 -14.91908 -14.59069 -14.28919 -14.25837 -14.10823 -13.95896 -13.78546 -13.56967 -13.35179 -12.82797 -12.70872 -12.64304 -12.51696 -12.32466 -12.18836 -12.12547 -11.98494 -11.91609 -11.88321 -11.86021 -11.80013 -11.57228 -11.56046 -11.50414 -11.34345 -11.25036 -11.16779 -10.67701 -9.88206 -9.46222 -8.84310 -7.70706 -5.20814 1.43147 1.46082 1.52832 1.64191 1.94070 2.52128 2.79103 3.30861 3.45053 3.66300 3.68897 3.79985 3.85746 3.90963 3.95981 4.02912 4.09734 4.17192 4.34514 4.36909 4.45342 4.46005 4.53057 4.62725 4.63232 4.66192 4.70040 4.75363 4.78081 4.80860 4.83657 4.85568 4.93846 5.01464 5.04282 5.06308 5.12632 5.14263 5.17963 5.25767 5.30447 5.33758 5.37224 5.42120 5.49940 5.51078 5.57893 5.60626 5.74883 5.80295 6.07353 6.32599 6.55338 7.16825 7.29360 7.91388 8.32235 9.24953 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.015380 B = 0.003443 C = 0.003270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1820.106054 B = 8129.656495 C = 8560.038813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.371 6.371 3 C 0.086 3.914 4 H 0.111 0.889 5 C 0.478 3.522 6 O -0.564 6.564 7 N -0.601 5.601 8 C 0.096 3.904 9 C -0.127 4.127 10 C -0.116 4.116 11 C -0.112 4.112 12 C 0.137 3.863 13 H 0.056 0.944 14 C 0.181 3.819 15 N -0.623 5.623 16 C 0.177 3.823 17 C -0.243 4.243 18 H 0.069 0.931 19 C -0.064 4.064 20 N -0.945 5.945 21 Si 0.969 3.031 22 H -0.276 1.276 23 H -0.294 1.294 24 H -0.281 1.281 25 C -0.084 4.084 26 C -0.123 4.123 27 C -0.119 4.119 28 C -0.118 4.118 29 C -0.107 4.107 30 H 0.096 0.904 31 H 0.071 0.929 32 H 0.021 0.979 33 H 0.112 0.888 34 H 0.086 0.914 35 H 0.109 0.891 36 H 0.059 0.941 37 H 0.067 0.933 38 H 0.069 0.931 39 H 0.055 0.945 40 H 0.039 0.961 41 H 0.040 0.960 42 H 0.029 0.971 43 H 0.016 0.984 44 H 0.033 0.967 45 H 0.001 0.999 46 H 0.244 0.756 47 H 0.110 0.890 48 H 0.045 0.955 49 H 0.046 0.954 50 H 0.078 0.922 51 H 0.058 0.942 52 H 0.080 0.920 53 H 0.054 0.946 54 H 0.091 0.909 55 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.106 2.095 28.701 28.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.288 6.288 3 C 0.025 3.975 4 H 0.129 0.871 5 C 0.267 3.733 6 O -0.442 6.442 7 N -0.337 5.337 8 C -0.025 4.025 9 C -0.165 4.165 10 C -0.153 4.153 11 C -0.151 4.151 12 C 0.032 3.968 13 H 0.074 0.926 14 C 0.055 3.945 15 N -0.347 5.347 16 C 0.032 3.968 17 C -0.373 4.373 18 H 0.087 0.913 19 C -0.257 4.257 20 N -0.594 5.594 21 Si 0.797 3.203 22 H -0.202 1.202 23 H -0.220 1.220 24 H -0.207 1.207 25 C -0.103 4.103 26 C -0.160 4.160 27 C -0.157 4.157 28 C -0.156 4.156 29 C -0.144 4.144 30 H 0.114 0.886 31 H 0.090 0.910 32 H 0.040 0.960 33 H 0.130 0.870 34 H 0.105 0.895 35 H 0.127 0.873 36 H 0.078 0.922 37 H 0.086 0.914 38 H 0.088 0.912 39 H 0.074 0.926 40 H 0.058 0.942 41 H 0.058 0.942 42 H 0.047 0.953 43 H 0.034 0.966 44 H 0.051 0.949 45 H 0.019 0.981 46 H 0.054 0.946 47 H 0.128 0.872 48 H 0.064 0.936 49 H 0.065 0.935 50 H 0.097 0.903 51 H 0.077 0.923 52 H 0.099 0.901 53 H 0.073 0.927 54 H 0.109 0.891 55 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -0.089 1.499 28.078 28.118 hybrid contribution -0.723 0.427 -1.900 2.077 sum -0.812 1.926 26.178 26.261 Atomic orbital electron populations 1.22962 0.79987 1.03842 1.00174 1.87970 1.20817 1.25817 1.94210 1.22235 0.98281 0.86637 0.90355 0.87140 1.22102 0.76637 0.81431 0.93130 1.90793 1.51257 1.55702 1.46461 1.48423 1.65155 1.12025 1.08050 1.22231 1.01961 0.89176 0.89150 1.21917 0.99959 0.97369 0.97236 1.21533 1.01748 0.97469 0.94565 1.21726 0.98593 0.95151 0.99601 1.21853 0.97948 0.96104 0.80926 0.92567 1.21182 0.97528 0.93267 0.82478 1.44519 1.09033 1.70311 1.10875 1.20708 0.83615 0.97916 0.94547 1.19457 0.98032 1.29737 0.90027 0.91321 1.25645 1.00215 1.02294 0.97585 1.70309 1.32835 1.45914 1.10371 0.85303 0.78204 0.79289 0.77495 1.20156 1.21970 1.20675 1.22085 0.91146 1.01252 0.95783 1.22329 0.97562 0.98176 0.97969 1.22475 0.98020 1.00338 0.94856 1.22296 0.96758 0.97834 0.98708 1.22109 1.01039 0.97735 0.93550 0.88585 0.91044 0.96016 0.87034 0.89535 0.87253 0.92186 0.91429 0.91215 0.92649 0.94222 0.94185 0.95284 0.96585 0.94900 0.98070 0.94593 0.87250 0.93578 0.93505 0.90289 0.92323 0.90092 0.92717 0.89084 0.91167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.55 10.81 113.37 1.23 1.78 16 2 O -0.37 -9.61 8.34 -129.99 -1.08 -10.70 16 3 C 0.09 1.91 1.22 29.85 0.04 1.94 16 4 H 0.11 1.72 6.84 -2.39 -0.02 1.70 16 5 C 0.48 15.23 6.33 87.66 0.56 15.79 16 6 O -0.56 -24.46 11.91 15.95 0.19 -24.27 16 7 N -0.60 -17.24 2.97 -795.03 -2.36 -19.61 16 8 C 0.10 1.63 4.91 86.36 0.42 2.06 16 9 C -0.13 -2.11 6.08 30.67 0.19 -1.92 16 10 C -0.12 -2.76 5.88 30.62 0.18 -2.58 16 11 C -0.11 -3.98 4.70 30.67 0.14 -3.84 16 12 C 0.14 5.16 3.18 44.97 0.14 5.30 16 13 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 14 C 0.18 8.82 3.50 86.38 0.30 9.12 16 15 N -0.62 -34.59 2.69 -726.92 -1.95 -36.55 16 16 C 0.18 9.79 9.04 127.77 1.16 10.94 16 17 C -0.24 -14.23 8.26 84.03 0.69 -13.54 16 18 H 0.07 3.95 7.80 -2.91 -0.02 3.93 16 19 C -0.06 -3.82 5.31 84.86 0.45 -3.37 16 20 N -0.95 -59.06 9.97 21.65 0.22 -58.85 16 21 Si 0.97 47.48 29.57 68.60 2.03 49.50 16 22 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 23 H -0.29 -14.39 7.11 99.48 0.71 -13.68 16 24 H -0.28 -13.42 7.11 99.48 0.71 -12.71 16 25 C -0.08 -1.47 2.44 -10.07 -0.02 -1.49 16 26 C -0.12 -2.87 5.65 31.70 0.18 -2.69 16 27 C -0.12 -2.08 6.91 31.91 0.22 -1.86 16 28 C -0.12 -1.70 6.83 31.67 0.22 -1.48 16 29 C -0.11 -1.33 6.21 31.32 0.19 -1.14 16 30 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.07 0.99 8.08 -2.39 -0.02 0.97 16 32 H 0.02 0.55 8.14 -2.39 -0.02 0.53 16 33 H 0.11 1.20 5.00 -2.39 -0.01 1.19 16 34 H 0.09 1.23 8.13 -2.39 -0.02 1.21 16 35 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 39 H 0.05 2.38 7.01 -2.38 -0.02 2.36 16 40 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 41 H 0.04 2.10 6.25 -2.38 -0.01 2.09 16 42 H 0.03 1.54 7.00 -2.39 -0.02 1.53 16 43 H 0.02 0.77 7.91 -2.38 -0.02 0.75 16 44 H 0.03 2.02 6.43 -2.39 -0.02 2.00 16 45 H 0.00 0.04 7.82 -2.39 -0.02 0.03 16 46 H 0.24 14.84 8.31 -92.71 -0.77 14.06 16 47 H 0.11 1.48 5.86 -2.39 -0.01 1.47 16 48 H 0.05 1.41 7.15 -2.38 -0.02 1.39 16 49 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 50 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 51 H 0.06 1.08 8.14 -2.38 -0.02 1.06 16 52 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 53 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 54 H 0.09 0.69 8.14 -2.38 -0.02 0.67 16 55 H 0.07 0.87 7.40 -2.39 -0.02 0.86 16 Total: -1.00 -77.74 405.01 4.16 -73.58 By element: Atomic # 1 Polarization: 13.03 SS G_CDS: 0.84 Total: 13.87 kcal Atomic # 6 Polarization: 6.73 SS G_CDS: 6.28 Total: 13.01 kcal Atomic # 7 Polarization: -110.90 SS G_CDS: -4.10 Total: -115.00 kcal Atomic # 8 Polarization: -34.08 SS G_CDS: -0.89 Total: -34.97 kcal Atomic # 14 Polarization: 47.48 SS G_CDS: 2.03 Total: 49.50 kcal Total: -77.74 4.16 -73.58 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158801142.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.084 kcal (2) G-P(sol) polarization free energy of solvation -77.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds