Wall clock time and date at job start Tue Mar 31 2020 22:19:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42899 * 113.99619 * 2 1 4 4 H 1.09005 * 109.47445 * 10.29251 * 3 2 1 5 5 C 1.50700 * 109.47110 * 130.28993 * 3 2 1 6 6 O 1.21290 * 119.99761 * 8.42977 * 5 3 2 7 7 N 1.34772 * 120.00464 * 188.42998 * 5 3 2 8 8 C 1.47207 * 120.81190 * 9.23194 * 7 5 3 9 9 C 1.53195 * 108.85539 * 233.66162 * 8 7 5 10 10 C 1.53045 * 109.31172 * 305.34690 * 9 8 7 11 11 C 1.53038 * 109.53631 * 61.36595 * 10 9 8 12 12 C 1.46923 * 120.63367 * 189.37746 * 7 5 3 13 13 H 1.09005 * 109.58783 * 246.18075 * 12 7 5 14 14 C 1.52997 * 109.58634 * 6.45863 * 12 7 5 15 15 N 1.46507 * 109.46845 * 171.22863 * 14 12 7 16 16 C 1.46496 * 119.99837 * 84.03681 * 15 14 12 17 17 C 1.36933 * 119.99937 * 264.02893 * 15 14 12 18 18 H 1.08004 * 120.00433 * 347.50316 * 17 15 14 19 19 C 1.38810 * 120.00093 * 167.50323 * 17 15 14 20 20 N 1.31623 * 119.99813 * 6.48881 * 19 17 15 21 21 Si 1.86803 * 120.00371 * 186.49558 * 19 17 15 22 22 H 1.48493 * 109.47189 * 89.99666 * 21 19 17 23 23 H 1.48498 * 109.47015 * 210.00109 * 21 19 17 24 24 H 1.48495 * 109.46879 * 329.99416 * 21 19 17 25 25 C 1.52995 * 109.46968 * 250.28623 * 3 2 1 26 26 C 1.54272 * 110.03068 * 64.04398 * 25 3 2 27 27 C 1.54893 * 104.19486 * 217.10494 * 26 25 3 28 28 C 1.54888 * 102.75045 * 37.93697 * 27 26 25 29 29 C 1.53876 * 110.03678 * 306.87402 * 25 3 2 30 30 H 1.08996 * 109.47166 * 188.60106 * 1 2 3 31 31 H 1.09004 * 109.47183 * 308.59995 * 1 2 3 32 32 H 1.08997 * 109.47194 * 68.59935 * 1 2 3 33 33 H 1.08994 * 109.55901 * 113.84111 * 8 7 5 34 34 H 1.09001 * 109.65128 * 353.53550 * 8 7 5 35 35 H 1.08998 * 109.49651 * 185.39859 * 9 8 7 36 36 H 1.09001 * 109.52538 * 65.31432 * 9 8 7 37 37 H 1.09000 * 109.45889 * 301.34770 * 10 9 8 38 38 H 1.08992 * 109.44693 * 181.38209 * 10 9 8 39 39 H 1.08999 * 109.49773 * 178.67901 * 11 10 9 40 40 H 1.09008 * 109.52262 * 58.60272 * 11 10 9 41 41 H 1.08998 * 109.47853 * 291.22903 * 14 12 7 42 42 H 1.08999 * 109.46790 * 51.23569 * 14 12 7 43 43 H 1.08994 * 109.47351 * 1.97252 * 16 15 14 44 44 H 1.09000 * 109.47078 * 121.97341 * 16 15 14 45 45 H 1.08999 * 109.46870 * 241.97037 * 16 15 14 46 46 H 0.97000 * 119.99984 * 179.97438 * 20 19 17 47 47 H 1.09005 * 110.01913 * 185.48270 * 25 3 2 48 48 H 1.08997 * 110.48459 * 335.77995 * 26 25 3 49 49 H 1.08994 * 110.48991 * 98.42449 * 26 25 3 50 50 H 1.09007 * 110.75110 * 279.62818 * 27 26 25 51 51 H 1.08990 * 110.75841 * 156.25613 * 27 26 25 52 52 H 1.08992 * 110.49152 * 203.38034 * 28 27 26 53 53 H 1.09006 * 110.48392 * 80.73534 * 28 27 26 54 54 H 1.08993 * 110.03109 * 238.56722 * 29 25 3 55 55 H 1.09004 * 110.02571 * 359.97438 * 29 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.2342 2.0487 0.1836 5 6 3.0538 1.3908 1.0838 6 8 3.3873 0.3912 1.6845 7 7 3.6167 2.5776 1.3856 8 6 3.0891 3.8286 0.8167 9 6 4.2345 4.5845 0.1357 10 6 5.3756 4.7825 1.1361 11 6 5.9000 3.4186 1.5909 12 6 4.7736 2.6495 2.2883 13 1 4.4905 3.1675 3.2047 14 6 5.2501 1.2352 2.6250 15 7 6.5213 1.3078 3.3497 16 6 6.5271 1.5250 4.7985 17 6 7.7040 1.1725 2.6729 18 1 7.7052 0.8147 1.6538 19 6 8.9014 1.4952 3.2965 20 7 8.9142 1.8083 4.5748 21 14 10.4947 1.4852 2.3214 22 1 10.7246 2.8300 1.7350 23 1 11.6237 1.1381 3.2215 24 1 10.4025 0.4796 1.2327 25 6 2.6621 1.5735 -1.3579 26 6 1.5884 1.5895 -2.4656 27 6 2.2834 0.9216 -3.6780 28 6 3.1230 -0.1991 -3.0161 29 6 3.6378 0.4363 -1.7079 30 1 -0.3633 -1.0161 0.1537 31 1 -0.3634 0.6412 0.8032 32 1 -0.3633 0.3750 -0.9568 33 1 2.6686 4.4427 1.6130 34 1 2.3152 3.6004 0.0839 35 1 3.8770 5.5560 -0.2054 36 1 4.5942 4.0091 -0.7173 37 1 5.0090 5.3370 2.0000 38 1 6.1817 5.3416 0.6611 39 1 6.7281 3.5603 2.2853 40 1 6.2444 2.8535 0.7247 41 1 4.5051 0.7391 3.2471 42 1 5.3890 0.6696 1.7036 43 1 5.5010 1.5731 5.1628 44 1 7.0481 0.7017 5.2872 45 1 7.0368 2.4619 5.0233 46 1 9.7510 2.0334 5.0107 47 1 3.1914 2.5261 -1.3362 48 1 0.7163 1.0116 -2.1598 49 1 1.3034 2.6138 -2.7058 50 1 2.9279 1.6334 -4.1941 51 1 1.5466 0.4999 -4.3615 52 1 3.9578 -0.4801 -3.6579 53 1 2.4986 -1.0659 -2.7992 54 1 4.6403 0.8371 -1.8569 55 1 3.6472 -0.3064 -0.9101 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001158801143.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:50 Heat of formation + Delta-G solvation = -62.612803 kcal Electronic energy + Delta-G solvation = -33058.856050 eV Core-core repulsion = 29096.323270 eV Total energy + Delta-G solvation = -3962.532780 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.89478 -39.84501 -38.30203 -37.47485 -37.31432 -34.06050 -33.72765 -32.05987 -31.09809 -29.64121 -28.19975 -28.01672 -27.59433 -26.32300 -25.27973 -23.92327 -22.14290 -21.99928 -21.39457 -20.98180 -19.74906 -18.81712 -18.04129 -17.82275 -17.20475 -16.94478 -16.57575 -16.13805 -15.80688 -15.64359 -15.39446 -15.25646 -15.10669 -14.96762 -14.52989 -14.47321 -14.42209 -14.07021 -13.90713 -13.74569 -13.39204 -13.08174 -12.98524 -12.72019 -12.64698 -12.50016 -12.32137 -12.18690 -12.11263 -12.01743 -11.94039 -11.93606 -11.85891 -11.77050 -11.66168 -11.56084 -11.44649 -11.37124 -11.30398 -10.78251 -10.60525 -9.95189 -9.47832 -8.85551 -7.72860 -5.18244 1.43273 1.44017 1.52949 1.61443 1.88860 2.50909 2.91577 3.32402 3.47306 3.62178 3.68523 3.79222 3.88275 3.92850 3.96376 4.06405 4.07972 4.20051 4.31933 4.39152 4.43131 4.48437 4.53923 4.58731 4.62883 4.64946 4.70346 4.77069 4.80097 4.80557 4.82458 4.87004 4.96260 5.03932 5.07093 5.07154 5.12211 5.15293 5.18086 5.28174 5.33057 5.34674 5.39913 5.47032 5.48053 5.54653 5.58355 5.63182 5.76750 5.83411 6.15158 6.32568 6.56962 7.18894 7.29213 7.91673 8.32998 9.24764 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.013392 B = 0.003769 C = 0.003686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2090.276267 B = 7427.498814 C = 7593.909616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.382 6.382 3 C 0.088 3.912 4 H 0.117 0.883 5 C 0.494 3.506 6 O -0.563 6.563 7 N -0.603 5.603 8 C 0.097 3.903 9 C -0.126 4.126 10 C -0.117 4.117 11 C -0.101 4.101 12 C 0.138 3.862 13 H 0.054 0.946 14 C 0.181 3.819 15 N -0.625 5.625 16 C 0.185 3.815 17 C -0.237 4.237 18 H 0.061 0.939 19 C -0.053 4.053 20 N -0.943 5.943 21 Si 0.962 3.038 22 H -0.280 1.280 23 H -0.293 1.293 24 H -0.278 1.278 25 C -0.098 4.098 26 C -0.114 4.114 27 C -0.116 4.116 28 C -0.119 4.119 29 C -0.120 4.120 30 H 0.089 0.911 31 H 0.050 0.950 32 H 0.070 0.930 33 H 0.085 0.915 34 H 0.111 0.889 35 H 0.109 0.891 36 H 0.062 0.938 37 H 0.066 0.934 38 H 0.066 0.934 39 H 0.051 0.949 40 H 0.037 0.963 41 H 0.038 0.962 42 H 0.030 0.970 43 H 0.010 0.990 44 H -0.002 1.002 45 H 0.038 0.962 46 H 0.245 0.755 47 H 0.097 0.903 48 H 0.075 0.925 49 H 0.094 0.906 50 H 0.073 0.927 51 H 0.080 0.920 52 H 0.060 0.940 53 H 0.059 0.941 54 H 0.044 0.956 55 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.286 7.942 -16.962 28.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.300 6.300 3 C 0.027 3.973 4 H 0.134 0.866 5 C 0.282 3.718 6 O -0.440 6.440 7 N -0.339 5.339 8 C -0.024 4.024 9 C -0.164 4.164 10 C -0.154 4.154 11 C -0.139 4.139 12 C 0.032 3.968 13 H 0.072 0.928 14 C 0.055 3.945 15 N -0.350 5.350 16 C 0.040 3.960 17 C -0.367 4.367 18 H 0.078 0.922 19 C -0.246 4.246 20 N -0.592 5.592 21 Si 0.791 3.209 22 H -0.207 1.207 23 H -0.220 1.220 24 H -0.203 1.203 25 C -0.117 4.117 26 C -0.151 4.151 27 C -0.154 4.154 28 C -0.157 4.157 29 C -0.158 4.158 30 H 0.108 0.892 31 H 0.069 0.931 32 H 0.088 0.912 33 H 0.103 0.897 34 H 0.129 0.871 35 H 0.127 0.873 36 H 0.081 0.919 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.070 0.930 40 H 0.056 0.944 41 H 0.056 0.944 42 H 0.048 0.952 43 H 0.029 0.971 44 H 0.016 0.984 45 H 0.057 0.943 46 H 0.054 0.946 47 H 0.115 0.885 48 H 0.094 0.906 49 H 0.113 0.887 50 H 0.091 0.909 51 H 0.098 0.902 52 H 0.079 0.921 53 H 0.078 0.922 54 H 0.063 0.937 55 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -20.894 7.242 -16.539 27.614 hybrid contribution 1.519 -0.417 0.434 1.634 sum -19.374 6.825 -16.105 26.102 Atomic orbital electron populations 1.23218 0.79243 1.03771 1.01489 1.88040 1.21384 1.25916 1.94649 1.22076 0.94917 0.87357 0.92990 0.86551 1.21486 0.83438 0.82725 0.84118 1.90763 1.62862 1.37589 1.52825 1.48433 1.31120 1.07070 1.47230 1.22218 0.97017 0.84091 0.99092 1.21920 0.94937 1.01867 0.97645 1.21547 0.98826 0.95440 0.99619 1.21566 0.96974 0.96211 0.99189 1.21844 0.85064 0.98750 0.91119 0.92781 1.21087 0.85439 0.93042 0.94904 1.44476 1.01903 1.84687 1.03948 1.20756 0.93358 0.99363 0.82489 1.19363 0.85153 1.35834 0.96374 0.92159 1.25586 1.00536 1.01510 0.97006 1.70371 1.25017 1.54171 1.09661 0.85322 0.79874 0.77912 0.77787 1.20677 1.21988 1.20331 1.22268 0.97284 0.99437 0.92720 1.22520 0.96940 1.02400 0.93251 1.22455 0.98778 0.96974 0.97163 1.22291 0.99502 0.98684 0.95173 1.22039 0.97935 0.97645 0.98178 0.89247 0.93089 0.91202 0.89719 0.87054 0.87257 0.91928 0.91573 0.91558 0.92994 0.94425 0.94360 0.95166 0.97148 0.98374 0.94335 0.94551 0.88474 0.90614 0.88723 0.90865 0.90182 0.92128 0.92225 0.93699 0.94416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 10.48 113.37 1.19 1.48 16 2 O -0.38 -9.93 8.65 -130.08 -1.13 -11.05 16 3 C 0.09 1.99 1.42 29.85 0.04 2.03 16 4 H 0.12 1.74 6.48 -2.38 -0.02 1.72 16 5 C 0.49 16.26 6.05 87.66 0.53 16.79 16 6 O -0.56 -24.90 12.18 15.84 0.19 -24.71 16 7 N -0.60 -17.96 2.98 -794.32 -2.37 -20.34 16 8 C 0.10 1.75 5.50 86.31 0.47 2.22 16 9 C -0.13 -2.24 5.95 30.67 0.18 -2.06 16 10 C -0.12 -3.03 5.88 30.62 0.18 -2.85 16 11 C -0.10 -3.83 4.38 30.67 0.13 -3.69 16 12 C 0.14 5.34 3.25 44.97 0.15 5.49 16 13 H 0.05 2.14 8.14 -2.38 -0.02 2.12 16 14 C 0.18 8.88 3.65 86.38 0.32 9.19 16 15 N -0.62 -34.70 2.39 -726.95 -1.74 -36.44 16 16 C 0.18 10.22 9.03 127.77 1.15 11.37 16 17 C -0.24 -13.92 8.22 84.03 0.69 -13.23 16 18 H 0.06 3.57 7.77 -2.91 -0.02 3.54 16 19 C -0.05 -3.12 5.46 84.86 0.46 -2.66 16 20 N -0.94 -57.50 9.55 21.65 0.21 -57.29 16 21 Si 0.96 47.22 29.56 68.60 2.03 49.25 16 22 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 23 H -0.29 -14.39 7.11 99.48 0.71 -13.69 16 24 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 25 C -0.10 -1.90 2.38 -10.07 -0.02 -1.92 16 26 C -0.11 -1.42 6.29 31.67 0.20 -1.22 16 27 C -0.12 -1.60 6.91 31.89 0.22 -1.38 16 28 C -0.12 -2.43 6.83 31.67 0.22 -2.22 16 29 C -0.12 -3.17 5.81 31.32 0.18 -2.99 16 30 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.05 0.71 7.97 -2.39 -0.02 0.69 16 32 H 0.07 0.73 6.04 -2.39 -0.01 0.72 16 33 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.11 1.28 4.91 -2.39 -0.01 1.26 16 35 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.06 1.20 7.29 -2.39 -0.02 1.18 16 37 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 38 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 39 H 0.05 2.43 7.01 -2.39 -0.02 2.42 16 40 H 0.04 1.54 8.14 -2.38 -0.02 1.52 16 41 H 0.04 1.99 6.57 -2.39 -0.02 1.98 16 42 H 0.03 1.61 6.63 -2.39 -0.02 1.59 16 43 H 0.01 0.50 7.86 -2.39 -0.02 0.48 16 44 H 0.00 -0.14 7.53 -2.39 -0.02 -0.16 16 45 H 0.04 2.24 6.58 -2.39 -0.02 2.23 16 46 H 0.24 14.49 8.31 -92.71 -0.77 13.72 16 47 H 0.10 1.69 5.45 -2.38 -0.01 1.68 16 48 H 0.08 0.90 5.04 -2.39 -0.01 0.89 16 49 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 50 H 0.07 0.93 8.14 -2.38 -0.02 0.91 16 51 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 52 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 53 H 0.06 1.28 8.14 -2.38 -0.02 1.27 16 54 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 55 H 0.04 1.31 6.84 -2.38 -0.02 1.29 16 Total: -1.00 -77.36 398.25 4.34 -73.02 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: 0.85 Total: 13.21 kcal Atomic # 6 Polarization: 8.06 SS G_CDS: 6.30 Total: 14.36 kcal Atomic # 7 Polarization: -110.16 SS G_CDS: -3.90 Total: -114.06 kcal Atomic # 8 Polarization: -34.83 SS G_CDS: -0.93 Total: -35.76 kcal Atomic # 14 Polarization: 47.22 SS G_CDS: 2.03 Total: 49.25 kcal Total: -77.36 4.34 -73.02 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158801143.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.402 kcal (2) G-P(sol) polarization free energy of solvation -77.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds