Wall clock time and date at job start Tue Mar 31 2020 22:03:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42892 * 109.47120 * 2 1 4 4 C 1.42906 * 113.99915 * 184.49796 * 3 2 1 5 5 H 1.08999 * 109.47227 * 33.51103 * 4 3 2 6 6 C 1.52996 * 109.47097 * 153.51235 * 4 3 2 7 7 C 1.50704 * 109.46906 * 294.99861 * 6 4 3 8 8 O 1.21273 * 120.00283 * 0.02562 * 7 6 4 9 9 N 1.34782 * 119.99765 * 179.97438 * 7 6 4 10 10 C 1.46500 * 119.99873 * 180.02562 * 9 7 6 11 11 C 1.52998 * 109.47244 * 180.02562 * 10 9 7 12 12 C 1.50698 * 109.47168 * 180.02562 * 11 10 9 13 13 C 1.29463 * 117.69495 * 94.99700 * 12 11 10 14 14 C 1.50321 * 123.64597 * 181.13616 * 13 12 11 15 15 N 1.47108 * 109.11241 * 348.54447 * 14 13 12 16 16 C 1.36937 * 121.51024 * 223.16032 * 15 14 13 17 17 H 1.07997 * 120.00392 * 156.20011 * 16 15 14 18 18 C 1.38818 * 119.99930 * 336.19015 * 16 15 14 19 19 N 1.31614 * 120.00122 * 345.28959 * 18 16 15 20 20 Si 1.86804 * 119.99943 * 165.28076 * 18 16 15 21 21 H 1.48497 * 109.46845 * 60.00566 * 20 18 16 22 22 H 1.48495 * 109.47040 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.47051 * 300.00718 * 20 18 16 24 24 C 1.47333 * 117.11206 * 43.34280 * 15 14 13 25 25 C 1.49970 * 117.69524 * 274.97550 * 12 11 10 26 26 C 1.52996 * 109.47160 * 273.51243 * 4 3 2 27 27 C 1.53001 * 109.47142 * 175.12334 * 26 4 3 28 28 C 1.53001 * 109.47198 * 295.12083 * 26 4 3 29 29 H 1.09000 * 109.47228 * 300.00184 * 1 2 3 30 30 H 1.08996 * 109.47224 * 60.00065 * 1 2 3 31 31 H 1.09001 * 109.47677 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47228 * 239.99816 * 2 1 3 33 33 H 1.09002 * 109.46564 * 119.99913 * 2 1 3 34 34 H 1.09000 * 109.47305 * 175.00374 * 6 4 3 35 35 H 1.09001 * 109.47441 * 54.99713 * 6 4 3 36 36 H 0.96996 * 120.00040 * 0.02562 * 9 7 6 37 37 H 1.08996 * 109.47117 * 60.00100 * 10 9 7 38 38 H 1.08998 * 109.47356 * 300.00512 * 10 9 7 39 39 H 1.08996 * 109.47445 * 59.99734 * 11 10 9 40 40 H 1.09010 * 109.46837 * 299.99807 * 11 10 9 41 41 H 1.07995 * 118.17161 * 0.86106 * 13 12 11 42 42 H 1.09009 * 109.51916 * 108.65235 * 14 13 12 43 43 H 1.08997 * 109.51857 * 228.83121 * 14 13 12 44 44 H 0.97001 * 120.00351 * 179.97438 * 19 18 16 45 45 H 1.09001 * 109.77897 * 178.43512 * 24 15 14 46 46 H 1.09002 * 109.77669 * 57.62970 * 24 15 14 47 47 H 1.08999 * 109.31359 * 281.29456 * 25 12 11 48 48 H 1.09000 * 109.30931 * 40.71767 * 25 12 11 49 49 H 1.08994 * 109.47499 * 55.11915 * 26 4 3 50 50 H 1.08996 * 109.47134 * 65.63555 * 27 26 4 51 51 H 1.09000 * 109.47564 * 185.63549 * 27 26 4 52 52 H 1.09004 * 109.46917 * 305.63673 * 27 26 4 53 53 H 1.08999 * 109.46906 * 59.99903 * 28 26 4 54 54 H 1.08995 * 109.47444 * 180.02562 * 28 26 4 55 55 H 1.09003 * 109.46847 * 300.00073 * 28 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4271 1.4614 -0.1024 5 1 3.8130 0.6514 -0.7214 6 6 3.7861 2.8054 -0.7391 7 6 3.2801 2.8401 -2.1582 8 8 2.6900 1.8842 -2.6151 9 7 3.4825 3.9339 -2.9193 10 6 2.9901 3.9679 -4.2986 11 6 3.3492 5.3119 -4.9354 12 6 2.8421 5.3470 -6.3541 13 6 1.6865 5.8906 -6.5667 14 6 1.0429 5.9755 -7.9225 15 7 2.0316 5.6105 -8.9488 16 6 2.1508 6.3219 -10.1128 17 1 3.0806 6.3069 -10.6621 18 6 1.0765 7.0621 -10.5870 19 7 -0.1284 6.8614 -10.0970 20 14 1.3409 8.3434 -11.9204 21 1 1.8888 7.6879 -13.1350 22 1 0.0456 8.9910 -12.2485 23 1 2.2989 9.3701 -11.4372 24 6 2.8865 4.4428 -8.6724 25 6 3.7119 4.7503 -7.4202 26 6 4.0474 1.3764 1.2936 27 6 5.5728 1.3763 1.1746 28 6 3.6008 2.5811 2.1244 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8932 -0.5138 0.8900 34 1 4.8689 2.9311 -0.7364 35 1 3.3252 3.6122 -0.1692 36 1 3.9542 4.6986 -2.5537 37 1 1.9074 3.8420 -4.3011 38 1 3.4508 3.1613 -4.8689 39 1 4.4319 5.4373 -4.9330 40 1 2.8886 6.1187 -4.3652 41 1 1.1535 6.3020 -5.7224 42 1 0.1963 5.2903 -7.9673 43 1 0.6977 6.9943 -8.0986 44 1 -0.8791 7.3789 -10.4280 45 1 3.5513 4.2641 -9.5176 46 1 2.2656 3.5641 -8.4984 47 1 4.5045 5.4540 -7.6746 48 1 4.1582 3.8285 -7.0472 49 1 3.7210 0.4578 1.7810 50 1 5.9065 2.3357 0.7794 51 1 6.0140 1.2153 2.1583 52 1 5.8847 0.5777 0.5014 53 1 2.5141 2.5812 2.2091 54 1 4.0431 2.5208 3.1187 55 1 3.9273 3.4997 1.6369 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001160352478.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:03:56 Heat of formation + Delta-G solvation = -89.869989 kcal Electronic energy + Delta-G solvation = -29659.049040 eV Core-core repulsion = 25695.334299 eV Total energy + Delta-G solvation = -3963.714741 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.02305 -39.64742 -39.17962 -36.68354 -36.24081 -35.06402 -33.20061 -32.27779 -31.54765 -31.10000 -29.73874 -27.99273 -27.13910 -25.46096 -24.56050 -23.89570 -23.67369 -22.46470 -21.66636 -20.29421 -19.46890 -18.37510 -17.82876 -17.61441 -17.06197 -16.88308 -16.52055 -16.37006 -15.91470 -15.66540 -15.49176 -15.19545 -15.07939 -14.87674 -14.72745 -14.33794 -14.16054 -14.00253 -13.91810 -13.60580 -13.37033 -13.20581 -13.04904 -13.00440 -12.84425 -12.76619 -12.68768 -12.57860 -12.45924 -12.33064 -12.20546 -12.08951 -11.88593 -11.83562 -11.71633 -11.67760 -11.38111 -11.24624 -10.80466 -10.68689 -10.29901 -10.04585 -9.48659 -8.76281 -7.88044 -5.30862 1.41839 1.46169 1.49215 1.55941 1.73843 2.28702 2.50776 2.79587 3.28455 3.64342 3.68867 3.78653 3.96351 4.01741 4.09774 4.14897 4.16846 4.24464 4.29073 4.30443 4.38925 4.45206 4.49764 4.54266 4.57407 4.59470 4.68786 4.70791 4.85947 4.86333 4.90436 4.91122 4.92953 4.98339 5.05112 5.08812 5.09880 5.12361 5.17493 5.23008 5.24003 5.26674 5.41213 5.47501 5.48915 5.49688 5.50298 5.59808 5.88012 6.28179 6.33123 6.37939 6.64283 7.12279 7.35973 7.82231 8.37805 9.20398 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.022470 B = 0.001814 C = 0.001749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.797345 B =15435.965315 C =16003.991598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.061 3.939 3 O -0.392 6.392 4 C 0.107 3.893 5 H 0.050 0.950 6 C -0.134 4.134 7 C 0.505 3.495 8 O -0.581 6.581 9 N -0.720 5.720 10 C 0.134 3.866 11 C -0.077 4.077 12 C -0.120 4.120 13 C -0.176 4.176 14 C 0.206 3.794 15 N -0.615 5.615 16 C -0.258 4.258 17 H 0.072 0.928 18 C -0.059 4.059 19 N -0.943 5.943 20 Si 0.974 3.026 21 H -0.275 1.275 22 H -0.295 1.295 23 H -0.277 1.277 24 C 0.134 3.866 25 C -0.086 4.086 26 C -0.114 4.114 27 C -0.148 4.148 28 C -0.143 4.143 29 H 0.065 0.935 30 H 0.042 0.958 31 H 0.086 0.914 32 H 0.034 0.966 33 H 0.059 0.941 34 H 0.138 0.862 35 H 0.119 0.881 36 H 0.417 0.583 37 H 0.041 0.959 38 H 0.056 0.944 39 H 0.095 0.905 40 H 0.082 0.918 41 H 0.111 0.889 42 H 0.001 0.999 43 H 0.057 0.943 44 H 0.250 0.750 45 H 0.060 0.940 46 H 0.015 0.985 47 H 0.070 0.930 48 H 0.085 0.915 49 H 0.068 0.932 50 H 0.071 0.929 51 H 0.067 0.933 52 H 0.053 0.947 53 H 0.046 0.954 54 H 0.062 0.938 55 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.762 -9.210 28.228 32.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.015 4.015 3 O -0.312 6.312 4 C 0.049 3.951 5 H 0.068 0.932 6 C -0.173 4.173 7 C 0.293 3.707 8 O -0.461 6.461 9 N -0.373 5.373 10 C 0.010 3.990 11 C -0.115 4.115 12 C -0.121 4.121 13 C -0.196 4.196 14 C 0.081 3.919 15 N -0.339 5.339 16 C -0.388 4.388 17 H 0.090 0.910 18 C -0.254 4.254 19 N -0.589 5.589 20 Si 0.801 3.199 21 H -0.200 1.200 22 H -0.221 1.221 23 H -0.203 1.203 24 C 0.009 3.991 25 C -0.125 4.125 26 C -0.133 4.133 27 C -0.205 4.205 28 C -0.200 4.200 29 H 0.084 0.916 30 H 0.061 0.939 31 H 0.104 0.896 32 H 0.053 0.947 33 H 0.078 0.922 34 H 0.156 0.844 35 H 0.137 0.863 36 H 0.254 0.746 37 H 0.059 0.941 38 H 0.074 0.926 39 H 0.113 0.887 40 H 0.101 0.899 41 H 0.129 0.871 42 H 0.018 0.982 43 H 0.075 0.925 44 H 0.059 0.941 45 H 0.078 0.922 46 H 0.033 0.967 47 H 0.088 0.912 48 H 0.103 0.897 49 H 0.087 0.913 50 H 0.090 0.910 51 H 0.086 0.914 52 H 0.072 0.928 53 H 0.065 0.935 54 H 0.081 0.919 55 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 12.087 -9.649 27.842 31.850 hybrid contribution -0.462 0.607 -1.099 1.337 sum 11.625 -9.042 26.743 30.531 Atomic orbital electron populations 1.21721 0.93656 1.02949 1.02123 1.22455 0.95773 0.83656 0.99651 1.87861 1.21784 1.27013 1.94504 1.21922 0.81265 0.96512 0.95410 0.93178 1.21995 1.04719 1.00028 0.90582 1.21260 0.78627 0.81923 0.88852 1.90698 1.42976 1.37243 1.75146 1.45939 1.59326 1.18793 1.13247 1.21083 0.98207 0.97817 0.81867 1.20798 1.02729 0.96180 0.91792 1.20604 0.95712 1.00189 0.95599 1.22828 0.97540 1.00907 0.98295 1.19375 0.89405 0.98474 0.84643 1.44450 1.41317 1.30873 1.17275 1.19522 0.96165 1.22868 1.00221 0.90983 1.25840 0.94556 1.03559 1.01395 1.70189 0.98908 1.42831 1.47022 0.85242 0.76391 0.79148 0.79078 1.20027 1.22077 1.20292 1.21156 0.92863 0.88555 0.96516 1.20711 0.97271 1.00438 0.94074 1.21585 0.96751 1.00065 0.94860 1.21886 0.93256 1.02744 1.02651 1.21807 1.01030 0.97485 0.99720 0.91632 0.93918 0.89556 0.94735 0.92238 0.84400 0.86303 0.74587 0.94054 0.92602 0.88679 0.89943 0.87079 0.98158 0.92513 0.94144 0.92159 0.96675 0.91154 0.89662 0.91338 0.90972 0.91435 0.92808 0.93505 0.91941 0.91323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.69 10.28 71.98 0.74 -1.94 16 2 C 0.06 1.21 6.48 71.98 0.47 1.67 16 3 O -0.39 -8.76 8.76 -135.19 -1.18 -9.94 16 4 C 0.11 1.80 1.42 30.59 0.04 1.85 16 5 H 0.05 1.00 7.58 -2.39 -0.02 0.98 16 6 C -0.13 -1.83 4.61 29.85 0.14 -1.69 16 7 C 0.51 11.33 7.71 87.66 0.68 12.01 16 8 O -0.58 -19.04 15.42 10.78 0.17 -18.87 16 9 N -0.72 -13.34 5.56 -463.06 -2.57 -15.91 16 10 C 0.13 3.30 5.66 86.38 0.49 3.79 16 11 C -0.08 -1.76 5.32 29.85 0.16 -1.60 16 12 C -0.12 -3.99 5.11 -15.15 -0.08 -4.06 16 13 C -0.18 -6.99 9.47 27.10 0.26 -6.73 16 14 C 0.21 10.60 5.24 85.40 0.45 11.05 16 15 N -0.62 -32.39 3.01 -703.13 -2.12 -34.51 16 16 C -0.26 -14.61 9.72 84.03 0.82 -13.80 16 17 H 0.07 3.92 7.87 -2.91 -0.02 3.89 16 18 C -0.06 -3.39 5.03 84.86 0.43 -2.97 16 19 N -0.94 -57.52 11.02 21.65 0.24 -57.28 16 20 Si 0.97 45.82 29.58 68.60 2.03 47.84 16 21 H -0.27 -12.42 7.11 99.48 0.71 -11.72 16 22 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 23 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 24 C 0.13 5.78 6.57 86.25 0.57 6.34 16 25 C -0.09 -2.91 5.95 29.65 0.18 -2.73 16 26 C -0.11 -1.29 2.86 -10.79 -0.03 -1.32 16 27 C -0.15 -1.13 8.81 71.98 0.63 -0.50 16 28 C -0.14 -1.46 8.61 71.98 0.62 -0.84 16 29 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.03 0.77 7.98 -2.39 -0.02 0.75 16 33 H 0.06 0.92 7.61 -2.39 -0.02 0.90 16 34 H 0.14 0.96 6.46 -2.39 -0.02 0.94 16 35 H 0.12 1.30 6.65 -2.39 -0.02 1.29 16 36 H 0.42 4.48 8.47 -92.71 -0.79 3.70 16 37 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 38 H 0.06 1.52 8.09 -2.39 -0.02 1.50 16 39 H 0.09 1.73 8.11 -2.39 -0.02 1.71 16 40 H 0.08 1.69 7.78 -2.38 -0.02 1.67 16 41 H 0.11 3.88 7.73 -2.91 -0.02 3.85 16 42 H 0.00 0.04 8.14 -2.38 -0.02 0.02 16 43 H 0.06 3.25 6.37 -2.39 -0.02 3.24 16 44 H 0.25 14.74 8.31 -92.71 -0.77 13.97 16 45 H 0.06 2.48 7.96 -2.39 -0.02 2.46 16 46 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 47 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 48 H 0.09 2.36 8.08 -2.39 -0.02 2.35 16 49 H 0.07 0.84 7.58 -2.39 -0.02 0.82 16 50 H 0.07 0.37 6.73 -2.39 -0.02 0.36 16 51 H 0.07 0.42 8.14 -2.39 -0.02 0.40 16 52 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 53 H 0.05 0.64 7.82 -2.39 -0.02 0.62 16 54 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 55 H 0.07 0.53 6.46 -2.39 -0.02 0.52 16 Total: -1.00 -75.87 428.60 3.17 -72.71 By element: Atomic # 1 Polarization: 17.38 SS G_CDS: 0.06 Total: 17.44 kcal Atomic # 6 Polarization: -8.02 SS G_CDS: 6.55 Total: -1.47 kcal Atomic # 7 Polarization: -103.26 SS G_CDS: -4.45 Total: -107.71 kcal Atomic # 8 Polarization: -27.80 SS G_CDS: -1.02 Total: -28.81 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 2.03 Total: 47.84 kcal Total: -75.87 3.17 -72.71 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160352478.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.164 kcal (2) G-P(sol) polarization free energy of solvation -75.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds