Wall clock time and date at job start Tue Mar 31 2020 22:04:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42896 * 109.46883 * 2 1 4 4 C 1.42904 * 113.99997 * 180.99543 * 3 2 1 5 5 H 1.09000 * 109.46497 * 350.33198 * 4 3 2 6 6 C 1.52995 * 109.47016 * 230.33626 * 4 3 2 7 7 C 1.50701 * 109.47490 * 64.99732 * 6 4 3 8 8 O 1.21281 * 119.99689 * 359.97438 * 7 6 4 9 9 N 1.34770 * 120.00543 * 180.02562 * 7 6 4 10 10 C 1.46499 * 120.00524 * 180.02562 * 9 7 6 11 11 C 1.52995 * 109.47472 * 179.97438 * 10 9 7 12 12 C 1.50695 * 109.47339 * 179.97438 * 11 10 9 13 13 C 1.29456 * 117.69716 * 94.99981 * 12 11 10 14 14 C 1.50319 * 123.65864 * 181.14151 * 13 12 11 15 15 N 1.47114 * 109.10482 * 348.53850 * 14 13 12 16 16 C 1.36931 * 121.51498 * 223.15925 * 15 14 13 17 17 H 1.08008 * 120.00155 * 153.74048 * 16 15 14 18 18 C 1.38816 * 119.99897 * 333.74269 * 16 15 14 19 19 N 1.31620 * 119.99877 * 348.81342 * 18 16 15 20 20 Si 1.86803 * 120.00085 * 168.82087 * 18 16 15 21 21 H 1.48503 * 109.47012 * 89.99396 * 20 18 16 22 22 H 1.48498 * 109.46835 * 209.99491 * 20 18 16 23 23 H 1.48499 * 109.46953 * 329.99675 * 20 18 16 24 24 C 1.47348 * 117.11036 * 43.34681 * 15 14 13 25 25 C 1.49970 * 117.69755 * 274.98140 * 12 11 10 26 26 C 1.52995 * 109.47324 * 110.33519 * 4 3 2 27 27 C 1.53003 * 109.46934 * 185.83391 * 26 4 3 28 28 C 1.53006 * 109.47278 * 305.83238 * 26 4 3 29 29 H 1.09005 * 109.46965 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47346 * 300.00250 * 1 2 3 31 31 H 1.08997 * 109.47248 * 60.00502 * 1 2 3 32 32 H 1.09003 * 109.46949 * 240.00072 * 2 1 3 33 33 H 1.09001 * 109.46988 * 119.99948 * 2 1 3 34 34 H 1.09002 * 109.47473 * 304.99428 * 6 4 3 35 35 H 1.08998 * 109.47420 * 184.99435 * 6 4 3 36 36 H 0.97004 * 120.00176 * 359.97438 * 9 7 6 37 37 H 1.08996 * 109.46979 * 59.99174 * 10 9 7 38 38 H 1.09005 * 109.46684 * 299.99266 * 10 9 7 39 39 H 1.09008 * 109.47041 * 59.99546 * 11 10 9 40 40 H 1.08997 * 109.47480 * 300.00377 * 11 10 9 41 41 H 1.08007 * 118.16757 * 0.86233 * 13 12 11 42 42 H 1.08999 * 109.52488 * 108.64832 * 14 13 12 43 43 H 1.09000 * 109.52354 * 228.83654 * 14 13 12 44 44 H 0.96996 * 119.99797 * 180.02562 * 19 18 16 45 45 H 1.08996 * 109.77293 * 178.43482 * 24 15 14 46 46 H 1.08994 * 109.77433 * 57.62375 * 24 15 14 47 47 H 1.09008 * 109.31395 * 281.28693 * 25 12 11 48 48 H 1.09000 * 109.31342 * 40.71671 * 25 12 11 49 49 H 1.08995 * 109.47683 * 65.83506 * 26 4 3 50 50 H 1.09007 * 109.46843 * 60.00035 * 27 26 4 51 51 H 1.09008 * 109.46841 * 179.97438 * 27 26 4 52 52 H 1.08993 * 109.47531 * 299.99996 * 27 26 4 53 53 H 1.09004 * 109.46511 * 62.31020 * 28 26 4 54 54 H 1.08999 * 109.47375 * 182.30926 * 28 26 4 55 55 H 1.08995 * 109.46938 * 302.31459 * 28 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4307 1.4602 -0.0227 5 1 3.8755 0.4780 0.1370 6 6 3.8845 2.4119 1.0860 7 6 3.5533 1.8133 2.4288 8 8 3.0076 0.7321 2.4927 9 7 3.8626 2.4797 3.5586 10 6 3.5412 1.8975 4.8639 11 6 3.9949 2.8493 5.9726 12 6 3.6637 2.2506 7.3153 13 6 4.5906 1.5787 7.9196 14 6 4.3986 0.9050 9.2496 15 7 3.1323 1.3623 9.8427 16 6 3.0401 1.6893 11.1691 17 1 2.2909 2.3928 11.5011 18 6 3.9096 1.1165 12.0873 19 7 4.6707 0.1040 11.7297 20 14 3.9992 1.7827 13.8302 21 1 3.0192 1.0658 14.6851 22 1 5.3681 1.5784 14.3682 23 1 3.6815 3.2332 13.8226 24 6 1.9647 1.4495 8.9481 25 6 2.2837 2.4756 7.8575 26 6 3.8773 2.0080 -1.3796 27 6 5.4053 1.9925 -1.4579 28 6 3.3005 1.1360 -2.4966 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5137 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.3710 3.3673 0.9775 35 1 4.9608 2.5676 1.0132 36 1 4.2988 3.3447 3.5075 37 1 4.0553 0.9426 4.9723 38 1 2.4649 1.7411 4.9368 39 1 3.4810 3.8045 5.8642 40 1 5.0711 3.0055 5.8995 41 1 5.5542 1.4937 7.4393 42 1 4.3702 -0.1756 9.1099 43 1 5.2236 1.1659 9.9125 44 1 5.2780 -0.2965 12.3714 45 1 1.0904 1.7718 9.5134 46 1 1.7740 0.4768 8.4948 47 1 2.2206 3.4796 8.2775 48 1 1.5587 2.3798 7.0492 49 1 3.5181 3.0306 -1.4947 50 1 5.7646 0.9698 -1.3428 51 1 5.7235 2.3824 -2.4248 52 1 5.8163 2.6137 -0.6622 53 1 2.2118 1.1798 -2.4662 54 1 3.6520 1.5017 -3.4614 55 1 3.6267 0.1053 -2.3580 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001160352479.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:04:00 Heat of formation + Delta-G solvation = -91.700452 kcal Electronic energy + Delta-G solvation = -29675.471037 eV Core-core repulsion = 25711.676921 eV Total energy + Delta-G solvation = -3963.794116 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.01442 -39.62827 -39.13613 -36.66961 -36.05938 -35.06297 -33.22581 -32.47624 -31.54897 -31.19838 -29.86994 -27.85724 -27.14538 -25.30488 -24.48467 -23.79498 -23.58954 -22.46114 -21.41185 -20.94342 -19.46984 -18.07369 -17.96393 -17.57467 -17.09709 -16.93854 -16.63440 -16.44977 -15.80683 -15.51904 -15.39855 -15.24006 -15.09367 -15.01791 -14.61614 -14.35356 -14.24453 -13.98034 -13.78063 -13.44423 -13.35877 -13.20880 -13.06498 -12.92288 -12.86900 -12.81406 -12.76633 -12.60019 -12.48557 -12.33981 -12.18160 -12.07284 -11.94146 -11.88745 -11.68969 -11.63528 -11.47160 -11.24293 -10.76368 -10.70744 -10.27335 -10.04877 -9.48866 -8.72587 -7.88395 -5.34037 1.41909 1.46133 1.47152 1.56978 1.73224 2.28170 2.50013 2.80873 3.29057 3.64556 3.71148 3.77626 3.96124 4.05154 4.08158 4.14410 4.18826 4.26161 4.29031 4.31513 4.44367 4.49102 4.53934 4.54722 4.58129 4.59373 4.68950 4.75497 4.82876 4.85618 4.88034 4.91182 4.95070 4.97865 5.02809 5.08069 5.11085 5.12295 5.17598 5.22968 5.24085 5.28072 5.41006 5.44308 5.46408 5.50276 5.50883 5.59797 5.87624 6.28456 6.34369 6.39168 6.63397 7.12835 7.35321 7.81641 8.38143 9.20044 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.024610 B = 0.001791 C = 0.001730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.458006 B =15632.768421 C =16179.158504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.061 3.939 3 O -0.390 6.390 4 C 0.106 3.894 5 H 0.053 0.947 6 C -0.143 4.143 7 C 0.506 3.494 8 O -0.580 6.580 9 N -0.720 5.720 10 C 0.135 3.865 11 C -0.078 4.078 12 C -0.121 4.121 13 C -0.175 4.175 14 C 0.207 3.793 15 N -0.615 5.615 16 C -0.258 4.258 17 H 0.071 0.929 18 C -0.057 4.057 19 N -0.943 5.943 20 Si 0.974 3.026 21 H -0.285 1.285 22 H -0.292 1.292 23 H -0.269 1.269 24 C 0.135 3.865 25 C -0.087 4.087 26 C -0.104 4.104 27 C -0.149 4.149 28 C -0.145 4.145 29 H 0.080 0.920 30 H 0.046 0.954 31 H 0.067 0.933 32 H 0.052 0.948 33 H 0.038 0.962 34 H 0.118 0.882 35 H 0.134 0.866 36 H 0.417 0.583 37 H 0.045 0.955 38 H 0.052 0.948 39 H 0.091 0.909 40 H 0.084 0.916 41 H 0.113 0.887 42 H 0.002 0.998 43 H 0.056 0.944 44 H 0.250 0.750 45 H 0.059 0.941 46 H 0.015 0.985 47 H 0.069 0.931 48 H 0.083 0.917 49 H 0.083 0.917 50 H 0.051 0.949 51 H 0.069 0.931 52 H 0.070 0.930 53 H 0.051 0.949 54 H 0.067 0.933 55 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.108 8.028 -30.447 31.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.015 4.015 3 O -0.309 6.309 4 C 0.048 3.952 5 H 0.071 0.929 6 C -0.183 4.183 7 C 0.294 3.706 8 O -0.460 6.460 9 N -0.373 5.373 10 C 0.011 3.989 11 C -0.115 4.115 12 C -0.122 4.122 13 C -0.194 4.194 14 C 0.082 3.918 15 N -0.339 5.339 16 C -0.388 4.388 17 H 0.088 0.912 18 C -0.252 4.252 19 N -0.589 5.589 20 Si 0.802 3.198 21 H -0.211 1.211 22 H -0.218 1.218 23 H -0.193 1.193 24 C 0.010 3.990 25 C -0.125 4.125 26 C -0.123 4.123 27 C -0.206 4.206 28 C -0.203 4.203 29 H 0.099 0.901 30 H 0.065 0.935 31 H 0.086 0.914 32 H 0.071 0.929 33 H 0.056 0.944 34 H 0.136 0.864 35 H 0.152 0.848 36 H 0.254 0.746 37 H 0.064 0.936 38 H 0.070 0.930 39 H 0.110 0.890 40 H 0.103 0.897 41 H 0.131 0.869 42 H 0.019 0.981 43 H 0.074 0.926 44 H 0.059 0.941 45 H 0.077 0.923 46 H 0.033 0.967 47 H 0.087 0.913 48 H 0.101 0.899 49 H 0.102 0.898 50 H 0.070 0.930 51 H 0.088 0.912 52 H 0.089 0.911 53 H 0.070 0.930 54 H 0.086 0.914 55 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -0.306 7.350 -30.280 31.161 hybrid contribution 0.469 -0.316 1.492 1.595 sum 0.163 7.034 -28.789 29.636 Atomic orbital electron populations 1.21710 0.93532 1.02770 1.02267 1.22518 0.95695 0.83673 0.99643 1.87791 1.21233 1.26952 1.94958 1.21945 0.81459 0.98013 0.93803 0.92909 1.22128 1.05365 1.01431 0.89337 1.21253 0.77400 0.84872 0.87092 1.90671 1.43677 1.23445 1.88190 1.45942 1.62267 1.24011 1.05033 1.21080 0.99848 0.96268 0.81721 1.20793 1.02476 0.98453 0.89787 1.20587 0.95794 0.99761 0.96068 1.22839 0.99267 0.99658 0.97627 1.19374 0.88908 0.93396 0.90162 1.44425 1.05313 1.78465 1.05718 1.19531 1.16916 1.18603 0.83747 0.91176 1.25900 1.00609 0.96797 1.01860 1.70172 1.28639 1.24691 1.35432 0.85174 0.76602 0.78344 0.79720 1.21130 1.21842 1.19350 1.21150 0.90059 0.96087 0.91747 1.20709 0.94329 0.99620 0.97887 1.21479 0.96792 1.00796 0.93243 1.21908 0.93323 1.02220 1.03130 1.21788 1.00899 0.99243 0.98324 0.90102 0.93496 0.91428 0.92936 0.94409 0.86363 0.84820 0.74626 0.93608 0.92973 0.89025 0.89713 0.86901 0.98059 0.92566 0.94122 0.92259 0.96653 0.91295 0.89869 0.89837 0.93025 0.91231 0.91074 0.93036 0.91430 0.93406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.68 10.28 71.98 0.74 -1.94 16 2 C 0.06 1.30 5.70 71.98 0.41 1.71 16 3 O -0.39 -8.47 8.63 -135.18 -1.17 -9.63 16 4 C 0.11 1.77 1.41 30.59 0.04 1.81 16 5 H 0.05 1.05 7.44 -2.39 -0.02 1.03 16 6 C -0.14 -1.92 5.29 29.85 0.16 -1.76 16 7 C 0.51 11.01 7.71 87.66 0.68 11.68 16 8 O -0.58 -18.09 13.75 10.76 0.15 -17.94 16 9 N -0.72 -13.08 5.56 -463.08 -2.57 -15.65 16 10 C 0.14 3.26 5.66 86.38 0.49 3.75 16 11 C -0.08 -1.75 5.32 29.84 0.16 -1.59 16 12 C -0.12 -4.00 5.11 -15.14 -0.08 -4.08 16 13 C -0.17 -6.82 9.47 27.10 0.26 -6.56 16 14 C 0.21 10.54 5.21 85.40 0.44 10.99 16 15 N -0.62 -32.33 3.01 -703.10 -2.11 -34.44 16 16 C -0.26 -14.61 9.71 84.04 0.82 -13.79 16 17 H 0.07 3.82 7.85 -2.91 -0.02 3.80 16 18 C -0.06 -3.27 5.10 84.86 0.43 -2.84 16 19 N -0.94 -57.19 10.99 21.65 0.24 -56.95 16 20 Si 0.97 45.68 29.57 68.60 2.03 47.71 16 21 H -0.28 -13.13 7.11 99.48 0.71 -12.43 16 22 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 23 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 24 C 0.13 5.82 6.57 86.25 0.57 6.39 16 25 C -0.09 -2.95 5.94 29.65 0.18 -2.78 16 26 C -0.10 -1.20 2.69 -10.79 -0.03 -1.23 16 27 C -0.15 -1.20 8.97 71.98 0.65 -0.56 16 28 C -0.15 -1.75 8.11 71.98 0.58 -1.17 16 29 H 0.08 1.23 8.14 -2.38 -0.02 1.21 16 30 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.05 0.94 7.20 -2.39 -0.02 0.93 16 33 H 0.04 1.00 6.65 -2.39 -0.02 0.99 16 34 H 0.12 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.13 0.97 6.38 -2.39 -0.02 0.96 16 36 H 0.42 4.44 8.47 -92.71 -0.79 3.66 16 37 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.05 1.44 8.09 -2.38 -0.02 1.42 16 39 H 0.09 1.72 8.11 -2.38 -0.02 1.70 16 40 H 0.08 1.69 7.78 -2.39 -0.02 1.67 16 41 H 0.11 3.83 7.73 -2.91 -0.02 3.81 16 42 H 0.00 0.10 8.14 -2.39 -0.02 0.08 16 43 H 0.06 3.20 6.44 -2.39 -0.02 3.18 16 44 H 0.25 14.63 8.31 -92.71 -0.77 13.86 16 45 H 0.06 2.46 7.96 -2.39 -0.02 2.44 16 46 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 47 H 0.07 2.31 8.14 -2.38 -0.02 2.29 16 48 H 0.08 2.37 8.08 -2.39 -0.02 2.35 16 49 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 50 H 0.05 0.48 8.14 -2.38 -0.02 0.46 16 51 H 0.07 0.45 8.14 -2.38 -0.02 0.43 16 52 H 0.07 0.40 6.49 -2.39 -0.02 0.39 16 53 H 0.05 0.73 7.32 -2.39 -0.02 0.72 16 54 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 55 H 0.05 0.60 8.05 -2.39 -0.02 0.58 16 Total: -1.00 -74.04 427.15 3.11 -70.93 By element: Atomic # 1 Polarization: 17.88 SS G_CDS: 0.06 Total: 17.94 kcal Atomic # 6 Polarization: -8.46 SS G_CDS: 6.49 Total: -1.97 kcal Atomic # 7 Polarization: -102.59 SS G_CDS: -4.45 Total: -107.04 kcal Atomic # 8 Polarization: -26.56 SS G_CDS: -1.02 Total: -27.58 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 2.03 Total: 47.71 kcal Total: -74.04 3.11 -70.93 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160352479.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.771 kcal (2) G-P(sol) polarization free energy of solvation -74.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds