Wall clock time and date at job start Tue Mar 31 2020 22:04:00
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 O 1.42896 * 109.46883 * 2 1
4 4 C 1.42904 * 113.99997 * 180.99543 * 3 2 1
5 5 H 1.09000 * 109.46497 * 350.33198 * 4 3 2
6 6 C 1.52995 * 109.47016 * 230.33626 * 4 3 2
7 7 C 1.50701 * 109.47490 * 64.99732 * 6 4 3
8 8 O 1.21281 * 119.99689 * 359.97438 * 7 6 4
9 9 N 1.34770 * 120.00543 * 180.02562 * 7 6 4
10 10 C 1.46499 * 120.00524 * 180.02562 * 9 7 6
11 11 C 1.52995 * 109.47472 * 179.97438 * 10 9 7
12 12 C 1.50695 * 109.47339 * 179.97438 * 11 10 9
13 13 C 1.29456 * 117.69716 * 94.99981 * 12 11 10
14 14 C 1.50319 * 123.65864 * 181.14151 * 13 12 11
15 15 N 1.47114 * 109.10482 * 348.53850 * 14 13 12
16 16 C 1.36931 * 121.51498 * 223.15925 * 15 14 13
17 17 H 1.08008 * 120.00155 * 153.74048 * 16 15 14
18 18 C 1.38816 * 119.99897 * 333.74269 * 16 15 14
19 19 N 1.31620 * 119.99877 * 348.81342 * 18 16 15
20 20 Si 1.86803 * 120.00085 * 168.82087 * 18 16 15
21 21 H 1.48503 * 109.47012 * 89.99396 * 20 18 16
22 22 H 1.48498 * 109.46835 * 209.99491 * 20 18 16
23 23 H 1.48499 * 109.46953 * 329.99675 * 20 18 16
24 24 C 1.47348 * 117.11036 * 43.34681 * 15 14 13
25 25 C 1.49970 * 117.69755 * 274.98140 * 12 11 10
26 26 C 1.52995 * 109.47324 * 110.33519 * 4 3 2
27 27 C 1.53003 * 109.46934 * 185.83391 * 26 4 3
28 28 C 1.53006 * 109.47278 * 305.83238 * 26 4 3
29 29 H 1.09005 * 109.46965 * 180.02562 * 1 2 3
30 30 H 1.09000 * 109.47346 * 300.00250 * 1 2 3
31 31 H 1.08997 * 109.47248 * 60.00502 * 1 2 3
32 32 H 1.09003 * 109.46949 * 240.00072 * 2 1 3
33 33 H 1.09001 * 109.46988 * 119.99948 * 2 1 3
34 34 H 1.09002 * 109.47473 * 304.99428 * 6 4 3
35 35 H 1.08998 * 109.47420 * 184.99435 * 6 4 3
36 36 H 0.97004 * 120.00176 * 359.97438 * 9 7 6
37 37 H 1.08996 * 109.46979 * 59.99174 * 10 9 7
38 38 H 1.09005 * 109.46684 * 299.99266 * 10 9 7
39 39 H 1.09008 * 109.47041 * 59.99546 * 11 10 9
40 40 H 1.08997 * 109.47480 * 300.00377 * 11 10 9
41 41 H 1.08007 * 118.16757 * 0.86233 * 13 12 11
42 42 H 1.08999 * 109.52488 * 108.64832 * 14 13 12
43 43 H 1.09000 * 109.52354 * 228.83654 * 14 13 12
44 44 H 0.96996 * 119.99797 * 180.02562 * 19 18 16
45 45 H 1.08996 * 109.77293 * 178.43482 * 24 15 14
46 46 H 1.08994 * 109.77433 * 57.62375 * 24 15 14
47 47 H 1.09008 * 109.31395 * 281.28693 * 25 12 11
48 48 H 1.09000 * 109.31342 * 40.71671 * 25 12 11
49 49 H 1.08995 * 109.47683 * 65.83506 * 26 4 3
50 50 H 1.09007 * 109.46843 * 60.00035 * 27 26 4
51 51 H 1.09008 * 109.46841 * 179.97438 * 27 26 4
52 52 H 1.08993 * 109.47531 * 299.99996 * 27 26 4
53 53 H 1.09004 * 109.46511 * 62.31020 * 28 26 4
54 54 H 1.08999 * 109.47375 * 182.30926 * 28 26 4
55 55 H 1.08995 * 109.46938 * 302.31459 * 28 26 4
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 8 2.0063 1.3473 0.0000
4 6 3.4307 1.4602 -0.0227
5 1 3.8755 0.4780 0.1370
6 6 3.8845 2.4119 1.0860
7 6 3.5533 1.8133 2.4288
8 8 3.0076 0.7321 2.4927
9 7 3.8626 2.4797 3.5586
10 6 3.5412 1.8975 4.8639
11 6 3.9949 2.8493 5.9726
12 6 3.6637 2.2506 7.3153
13 6 4.5906 1.5787 7.9196
14 6 4.3986 0.9050 9.2496
15 7 3.1323 1.3623 9.8427
16 6 3.0401 1.6893 11.1691
17 1 2.2909 2.3928 11.5011
18 6 3.9096 1.1165 12.0873
19 7 4.6707 0.1040 11.7297
20 14 3.9992 1.7827 13.8302
21 1 3.0192 1.0658 14.6851
22 1 5.3681 1.5784 14.3682
23 1 3.6815 3.2332 13.8226
24 6 1.9647 1.4495 8.9481
25 6 2.2837 2.4756 7.8575
26 6 3.8773 2.0080 -1.3796
27 6 5.4053 1.9925 -1.4579
28 6 3.3005 1.1360 -2.4966
29 1 -0.3633 -1.0277 0.0005
30 1 -0.3634 0.5139 0.8899
31 1 -0.3633 0.5137 -0.8900
32 1 1.8933 -0.5138 -0.8900
33 1 1.8933 -0.5138 0.8900
34 1 3.3710 3.3673 0.9775
35 1 4.9608 2.5676 1.0132
36 1 4.2988 3.3447 3.5075
37 1 4.0553 0.9426 4.9723
38 1 2.4649 1.7411 4.9368
39 1 3.4810 3.8045 5.8642
40 1 5.0711 3.0055 5.8995
41 1 5.5542 1.4937 7.4393
42 1 4.3702 -0.1756 9.1099
43 1 5.2236 1.1659 9.9125
44 1 5.2780 -0.2965 12.3714
45 1 1.0904 1.7718 9.5134
46 1 1.7740 0.4768 8.4948
47 1 2.2206 3.4796 8.2775
48 1 1.5587 2.3798 7.0492
49 1 3.5181 3.0306 -1.4947
50 1 5.7646 0.9698 -1.3428
51 1 5.7235 2.3824 -2.4248
52 1 5.8163 2.6137 -0.6622
53 1 2.2118 1.1798 -2.4662
54 1 3.6520 1.5017 -3.4614
55 1 3.6267 0.1053 -2.3580
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001160352479.mol2 55
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:04:00
Heat of formation + Delta-G solvation = -91.700452 kcal
Electronic energy + Delta-G solvation = -29675.471037 eV
Core-core repulsion = 25711.676921 eV
Total energy + Delta-G solvation = -3963.794116 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 338.236 amu
Computer time = 1.00 seconds
Orbital eigenvalues (eV)
-41.01442 -39.62827 -39.13613 -36.66961 -36.05938 -35.06297 -33.22581 -32.47624
-31.54897 -31.19838 -29.86994 -27.85724 -27.14538 -25.30488 -24.48467 -23.79498
-23.58954 -22.46114 -21.41185 -20.94342 -19.46984 -18.07369 -17.96393 -17.57467
-17.09709 -16.93854 -16.63440 -16.44977 -15.80683 -15.51904 -15.39855 -15.24006
-15.09367 -15.01791 -14.61614 -14.35356 -14.24453 -13.98034 -13.78063 -13.44423
-13.35877 -13.20880 -13.06498 -12.92288 -12.86900 -12.81406 -12.76633 -12.60019
-12.48557 -12.33981 -12.18160 -12.07284 -11.94146 -11.88745 -11.68969 -11.63528
-11.47160 -11.24293 -10.76368 -10.70744 -10.27335 -10.04877 -9.48866 -8.72587
-7.88395 -5.34037 1.41909 1.46133 1.47152 1.56978 1.73224 2.28170
2.50013 2.80873 3.29057 3.64556 3.71148 3.77626 3.96124 4.05154
4.08158 4.14410 4.18826 4.26161 4.29031 4.31513 4.44367 4.49102
4.53934 4.54722 4.58129 4.59373 4.68950 4.75497 4.82876 4.85618
4.88034 4.91182 4.95070 4.97865 5.02809 5.08069 5.11085 5.12295
5.17598 5.22968 5.24085 5.28072 5.41006 5.44308 5.46408 5.50276
5.50883 5.59797 5.87624 6.28456 6.34369 6.39168 6.63397 7.12835
7.35321 7.81641 8.38143 9.20044
Molecular weight = 338.24amu
Principal moments of inertia in cm(-1)
A = 0.024610 B = 0.001791 C = 0.001730
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1137.458006 B =15632.768421 C =16179.158504
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.146 4.146
2 C 0.061 3.939
3 O -0.390 6.390
4 C 0.106 3.894
5 H 0.053 0.947
6 C -0.143 4.143
7 C 0.506 3.494
8 O -0.580 6.580
9 N -0.720 5.720
10 C 0.135 3.865
11 C -0.078 4.078
12 C -0.121 4.121
13 C -0.175 4.175
14 C 0.207 3.793
15 N -0.615 5.615
16 C -0.258 4.258
17 H 0.071 0.929
18 C -0.057 4.057
19 N -0.943 5.943
20 Si 0.974 3.026
21 H -0.285 1.285
22 H -0.292 1.292
23 H -0.269 1.269
24 C 0.135 3.865
25 C -0.087 4.087
26 C -0.104 4.104
27 C -0.149 4.149
28 C -0.145 4.145
29 H 0.080 0.920
30 H 0.046 0.954
31 H 0.067 0.933
32 H 0.052 0.948
33 H 0.038 0.962
34 H 0.118 0.882
35 H 0.134 0.866
36 H 0.417 0.583
37 H 0.045 0.955
38 H 0.052 0.948
39 H 0.091 0.909
40 H 0.084 0.916
41 H 0.113 0.887
42 H 0.002 0.998
43 H 0.056 0.944
44 H 0.250 0.750
45 H 0.059 0.941
46 H 0.015 0.985
47 H 0.069 0.931
48 H 0.083 0.917
49 H 0.083 0.917
50 H 0.051 0.949
51 H 0.069 0.931
52 H 0.070 0.930
53 H 0.051 0.949
54 H 0.067 0.933
55 H 0.047 0.953
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.108 8.028 -30.447 31.488
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.203 4.203
2 C -0.015 4.015
3 O -0.309 6.309
4 C 0.048 3.952
5 H 0.071 0.929
6 C -0.183 4.183
7 C 0.294 3.706
8 O -0.460 6.460
9 N -0.373 5.373
10 C 0.011 3.989
11 C -0.115 4.115
12 C -0.122 4.122
13 C -0.194 4.194
14 C 0.082 3.918
15 N -0.339 5.339
16 C -0.388 4.388
17 H 0.088 0.912
18 C -0.252 4.252
19 N -0.589 5.589
20 Si 0.802 3.198
21 H -0.211 1.211
22 H -0.218 1.218
23 H -0.193 1.193
24 C 0.010 3.990
25 C -0.125 4.125
26 C -0.123 4.123
27 C -0.206 4.206
28 C -0.203 4.203
29 H 0.099 0.901
30 H 0.065 0.935
31 H 0.086 0.914
32 H 0.071 0.929
33 H 0.056 0.944
34 H 0.136 0.864
35 H 0.152 0.848
36 H 0.254 0.746
37 H 0.064 0.936
38 H 0.070 0.930
39 H 0.110 0.890
40 H 0.103 0.897
41 H 0.131 0.869
42 H 0.019 0.981
43 H 0.074 0.926
44 H 0.059 0.941
45 H 0.077 0.923
46 H 0.033 0.967
47 H 0.087 0.913
48 H 0.101 0.899
49 H 0.102 0.898
50 H 0.070 0.930
51 H 0.088 0.912
52 H 0.089 0.911
53 H 0.070 0.930
54 H 0.086 0.914
55 H 0.066 0.934
Dipole moment (debyes) X Y Z Total
from point charges -0.306 7.350 -30.280 31.161
hybrid contribution 0.469 -0.316 1.492 1.595
sum 0.163 7.034 -28.789 29.636
Atomic orbital electron populations
1.21710 0.93532 1.02770 1.02267 1.22518 0.95695 0.83673 0.99643
1.87791 1.21233 1.26952 1.94958 1.21945 0.81459 0.98013 0.93803
0.92909 1.22128 1.05365 1.01431 0.89337 1.21253 0.77400 0.84872
0.87092 1.90671 1.43677 1.23445 1.88190 1.45942 1.62267 1.24011
1.05033 1.21080 0.99848 0.96268 0.81721 1.20793 1.02476 0.98453
0.89787 1.20587 0.95794 0.99761 0.96068 1.22839 0.99267 0.99658
0.97627 1.19374 0.88908 0.93396 0.90162 1.44425 1.05313 1.78465
1.05718 1.19531 1.16916 1.18603 0.83747 0.91176 1.25900 1.00609
0.96797 1.01860 1.70172 1.28639 1.24691 1.35432 0.85174 0.76602
0.78344 0.79720 1.21130 1.21842 1.19350 1.21150 0.90059 0.96087
0.91747 1.20709 0.94329 0.99620 0.97887 1.21479 0.96792 1.00796
0.93243 1.21908 0.93323 1.02220 1.03130 1.21788 1.00899 0.99243
0.98324 0.90102 0.93496 0.91428 0.92936 0.94409 0.86363 0.84820
0.74626 0.93608 0.92973 0.89025 0.89713 0.86901 0.98059 0.92566
0.94122 0.92259 0.96653 0.91295 0.89869 0.89837 0.93025 0.91231
0.91074 0.93036 0.91430 0.93406
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.68 10.28 71.98 0.74 -1.94 16
2 C 0.06 1.30 5.70 71.98 0.41 1.71 16
3 O -0.39 -8.47 8.63 -135.18 -1.17 -9.63 16
4 C 0.11 1.77 1.41 30.59 0.04 1.81 16
5 H 0.05 1.05 7.44 -2.39 -0.02 1.03 16
6 C -0.14 -1.92 5.29 29.85 0.16 -1.76 16
7 C 0.51 11.01 7.71 87.66 0.68 11.68 16
8 O -0.58 -18.09 13.75 10.76 0.15 -17.94 16
9 N -0.72 -13.08 5.56 -463.08 -2.57 -15.65 16
10 C 0.14 3.26 5.66 86.38 0.49 3.75 16
11 C -0.08 -1.75 5.32 29.84 0.16 -1.59 16
12 C -0.12 -4.00 5.11 -15.14 -0.08 -4.08 16
13 C -0.17 -6.82 9.47 27.10 0.26 -6.56 16
14 C 0.21 10.54 5.21 85.40 0.44 10.99 16
15 N -0.62 -32.33 3.01 -703.10 -2.11 -34.44 16
16 C -0.26 -14.61 9.71 84.04 0.82 -13.79 16
17 H 0.07 3.82 7.85 -2.91 -0.02 3.80 16
18 C -0.06 -3.27 5.10 84.86 0.43 -2.84 16
19 N -0.94 -57.19 10.99 21.65 0.24 -56.95 16
20 Si 0.97 45.68 29.57 68.60 2.03 47.71 16
21 H -0.28 -13.13 7.11 99.48 0.71 -12.43 16
22 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16
23 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16
24 C 0.13 5.82 6.57 86.25 0.57 6.39 16
25 C -0.09 -2.95 5.94 29.65 0.18 -2.78 16
26 C -0.10 -1.20 2.69 -10.79 -0.03 -1.23 16
27 C -0.15 -1.20 8.97 71.98 0.65 -0.56 16
28 C -0.15 -1.75 8.11 71.98 0.58 -1.17 16
29 H 0.08 1.23 8.14 -2.38 -0.02 1.21 16
30 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16
31 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16
32 H 0.05 0.94 7.20 -2.39 -0.02 0.93 16
33 H 0.04 1.00 6.65 -2.39 -0.02 0.99 16
34 H 0.12 1.22 8.14 -2.39 -0.02 1.20 16
35 H 0.13 0.97 6.38 -2.39 -0.02 0.96 16
36 H 0.42 4.44 8.47 -92.71 -0.79 3.66 16
37 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16
38 H 0.05 1.44 8.09 -2.38 -0.02 1.42 16
39 H 0.09 1.72 8.11 -2.38 -0.02 1.70 16
40 H 0.08 1.69 7.78 -2.39 -0.02 1.67 16
41 H 0.11 3.83 7.73 -2.91 -0.02 3.81 16
42 H 0.00 0.10 8.14 -2.39 -0.02 0.08 16
43 H 0.06 3.20 6.44 -2.39 -0.02 3.18 16
44 H 0.25 14.63 8.31 -92.71 -0.77 13.86 16
45 H 0.06 2.46 7.96 -2.39 -0.02 2.44 16
46 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16
47 H 0.07 2.31 8.14 -2.38 -0.02 2.29 16
48 H 0.08 2.37 8.08 -2.39 -0.02 2.35 16
49 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16
50 H 0.05 0.48 8.14 -2.38 -0.02 0.46 16
51 H 0.07 0.45 8.14 -2.38 -0.02 0.43 16
52 H 0.07 0.40 6.49 -2.39 -0.02 0.39 16
53 H 0.05 0.73 7.32 -2.39 -0.02 0.72 16
54 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16
55 H 0.05 0.60 8.05 -2.39 -0.02 0.58 16
Total: -1.00 -74.04 427.15 3.11 -70.93
By element:
Atomic # 1 Polarization: 17.88 SS G_CDS: 0.06 Total: 17.94 kcal
Atomic # 6 Polarization: -8.46 SS G_CDS: 6.49 Total: -1.97 kcal
Atomic # 7 Polarization: -102.59 SS G_CDS: -4.45 Total: -107.04 kcal
Atomic # 8 Polarization: -26.56 SS G_CDS: -1.02 Total: -27.58 kcal
Atomic # 14 Polarization: 45.68 SS G_CDS: 2.03 Total: 47.71 kcal
Total: -74.04 3.11 -70.93 kcal
The number of atoms in the molecule is 55
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001160352479.mol2 55
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -20.771 kcal
(2) G-P(sol) polarization free energy of solvation -74.039 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.809 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.109 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.930 kcal
(6) G-S(sol) free energy of system = (1) + (5) -91.700 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.00 seconds