Wall clock time and date at job start Tue Mar 31 2020 22:40:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42896 * 114.00119 * 2 1 4 4 C 1.52998 * 109.47513 * 180.02562 * 3 2 1 5 5 C 1.53000 * 109.46069 * 299.97254 * 4 3 2 6 6 N 1.46501 * 109.47223 * 60.02345 * 5 4 3 7 7 C 1.34773 * 119.99923 * 180.02562 * 6 5 4 8 8 O 1.21274 * 120.00152 * 0.02562 * 7 6 5 9 9 C 1.50700 * 119.99546 * 180.02562 * 7 6 5 10 10 C 1.53000 * 109.46847 * 179.97438 * 9 7 6 11 11 C 1.54262 * 110.03431 * 292.90678 * 10 9 7 12 12 C 1.54968 * 104.16062 * 217.13522 * 11 10 9 13 13 C 1.54889 * 102.77632 * 37.88882 * 12 11 10 14 14 C 1.53879 * 110.03396 * 175.68867 * 10 9 7 15 15 C 1.53045 * 109.46432 * 179.97438 * 4 3 2 16 16 C 1.53189 * 109.31558 * 178.62869 * 15 4 3 17 17 N 1.46927 * 108.77596 * 54.63264 * 16 15 4 18 18 C 1.36937 * 120.62634 * 126.37089 * 17 16 15 19 19 H 1.07997 * 120.00342 * 332.15811 * 18 17 16 20 20 C 1.38808 * 119.99653 * 151.89331 * 18 17 16 21 21 N 1.31615 * 119.99878 * 343.01147 * 20 18 17 22 22 Si 1.86804 * 120.00113 * 163.02023 * 20 18 17 23 23 H 1.48499 * 109.47394 * 94.07396 * 22 20 18 24 24 H 1.48497 * 109.47180 * 214.07698 * 22 20 18 25 25 H 1.48498 * 109.46774 * 334.07706 * 22 20 18 26 26 C 1.46921 * 118.74117 * 306.64796 * 17 16 15 27 27 C 1.52764 * 109.00826 * 53.30371 * 26 17 16 28 28 H 1.09005 * 109.47033 * 299.99899 * 1 2 3 29 29 H 1.08992 * 109.47199 * 60.00286 * 1 2 3 30 30 H 1.09003 * 109.46745 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47410 * 59.99619 * 3 2 1 32 32 H 1.09003 * 109.47406 * 299.99930 * 3 2 1 33 33 H 1.09003 * 109.47099 * 180.02562 * 5 4 3 34 34 H 1.09004 * 109.46997 * 300.02726 * 5 4 3 35 35 H 0.97008 * 119.99521 * 0.02562 * 6 5 4 36 36 H 1.09003 * 109.47543 * 299.99951 * 9 7 6 37 37 H 1.09004 * 109.47137 * 60.00203 * 9 7 6 38 38 H 1.09002 * 110.01991 * 54.30190 * 10 9 7 39 39 H 1.08993 * 110.48752 * 335.78483 * 11 10 9 40 40 H 1.09006 * 110.48267 * 98.42725 * 11 10 9 41 41 H 1.09000 * 110.71964 * 279.57716 * 12 11 10 42 42 H 1.09004 * 110.92314 * 156.29738 * 12 11 10 43 43 H 1.08997 * 110.48325 * 203.40388 * 13 12 11 44 44 H 1.09001 * 110.59278 * 80.81965 * 13 12 11 45 45 H 1.08997 * 110.03285 * 238.57443 * 14 10 9 46 46 H 1.09000 * 110.02875 * 0.02562 * 14 10 9 47 47 H 1.09006 * 109.49266 * 58.67543 * 15 4 3 48 48 H 1.09003 * 109.52173 * 298.59978 * 15 4 3 49 49 H 1.09002 * 109.58362 * 294.84721 * 16 15 4 50 50 H 1.09000 * 109.70426 * 174.49640 * 16 15 4 51 51 H 0.97005 * 120.00167 * 180.02562 * 21 20 18 52 52 H 1.08997 * 109.58753 * 173.14526 * 26 17 16 53 53 H 1.09000 * 109.58571 * 293.56740 * 26 17 16 54 54 H 1.09002 * 109.56043 * 185.55481 * 27 26 17 55 55 H 1.08997 * 109.38623 * 65.52180 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 3.9872 0.4258 1.2487 6 7 3.3917 -0.9128 1.2490 7 6 3.6507 -1.7653 2.2602 8 8 4.3763 -1.4242 3.1701 9 6 3.0386 -3.1423 2.2602 10 6 3.4903 -3.9012 3.5096 11 6 5.0048 -4.1851 3.4368 12 6 5.1568 -5.5945 4.0630 13 6 3.9006 -6.3372 3.5440 14 6 2.7884 -5.2689 3.5782 15 6 4.1577 2.5829 -0.0013 16 6 5.6841 2.4582 0.0327 17 7 6.1139 1.6059 -1.0843 18 6 7.0588 2.0446 -1.9731 19 1 7.1734 3.1018 -2.1615 20 6 7.8731 1.1307 -2.6277 21 7 7.9821 -0.0988 -2.1709 22 14 8.8143 1.6460 -4.1568 23 1 10.1810 2.0822 -3.7734 24 1 8.9058 0.4965 -5.0925 25 1 8.1042 2.7689 -4.8201 26 6 5.5063 0.2766 -1.2331 27 6 3.9858 0.4236 -1.2496 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5137 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.6886 1.8464 0.8899 32 1 1.6886 1.8464 -0.8900 33 1 5.0738 0.3401 1.2486 34 1 3.6654 0.9668 2.1386 35 1 2.8110 -1.1854 0.5213 36 1 1.9519 -3.0570 2.2595 37 1 3.3611 -3.6833 1.3705 38 1 3.2620 -3.3193 4.4026 39 1 5.3426 -4.1898 2.4005 40 1 5.5595 -3.4473 4.0166 41 1 5.1487 -5.5358 5.1514 42 1 6.0664 -6.0810 3.7106 43 1 3.6506 -7.1694 4.2020 44 1 4.0582 -6.6915 2.5253 45 1 2.2201 -5.3509 4.5047 46 1 2.1263 -5.3921 2.7211 47 1 3.8179 3.1327 0.8765 48 1 3.8560 3.1154 -0.9033 49 1 5.9930 2.0077 0.9759 50 1 6.1357 3.4454 -0.0660 51 1 8.5515 -0.7374 -2.6282 52 1 5.8386 -0.1745 -2.1680 53 1 5.8004 -0.3555 -0.3952 54 1 3.5238 -0.5637 -1.2604 55 1 3.6853 0.9755 -2.1402 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162077593.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:05 Heat of formation + Delta-G solvation = -100.151460 kcal Electronic energy + Delta-G solvation = -31846.598800 eV Core-core repulsion = 27882.438221 eV Total energy + Delta-G solvation = -3964.160579 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.34945 -40.20312 -38.55152 -38.27056 -36.02783 -34.52612 -32.83279 -32.24460 -31.64045 -29.50472 -28.97406 -28.04825 -27.02693 -25.68922 -25.46956 -23.88402 -22.51373 -21.65971 -21.28818 -20.43526 -19.83434 -18.73032 -17.79278 -17.15306 -17.00916 -16.88516 -16.77537 -16.50600 -16.13085 -15.93245 -15.64779 -15.32572 -15.30083 -14.97033 -14.70958 -14.31791 -14.23067 -14.16411 -13.91444 -13.65533 -13.34856 -13.06082 -13.00476 -12.86216 -12.63164 -12.53062 -12.30018 -12.27868 -12.07115 -11.99155 -11.91103 -11.83342 -11.81510 -11.62935 -11.51693 -11.42742 -11.25663 -11.20836 -11.10386 -10.64609 -10.53968 -10.46182 -9.81364 -8.64974 -7.86325 -5.31875 1.45710 1.46691 1.57117 1.83228 2.35431 2.51536 2.90237 3.28569 3.67560 3.70037 3.74291 3.75582 3.83088 3.93892 4.00387 4.17816 4.29355 4.37797 4.45870 4.47815 4.52241 4.55881 4.60754 4.64233 4.65398 4.68315 4.71376 4.73152 4.78291 4.85866 4.87529 4.91830 4.93363 4.96694 4.98934 5.03922 5.12932 5.15630 5.18693 5.24883 5.28106 5.29157 5.36988 5.40687 5.49345 5.52545 5.57249 5.64834 5.73585 5.79441 6.28262 6.39601 6.85803 7.15939 7.50477 7.87773 8.39658 9.19881 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.010028 B = 0.003511 C = 0.002857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2791.429229 B = 7973.260352 C = 9799.100659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.407 6.407 3 C 0.082 3.918 4 C -0.052 4.052 5 C 0.142 3.858 6 N -0.703 5.703 7 C 0.496 3.504 8 O -0.594 6.594 9 C -0.125 4.125 10 C -0.073 4.073 11 C -0.119 4.119 12 C -0.126 4.126 13 C -0.121 4.121 14 C -0.114 4.114 15 C -0.108 4.108 16 C 0.138 3.862 17 N -0.608 5.608 18 C -0.262 4.262 19 H 0.068 0.932 20 C -0.052 4.052 21 N -0.936 5.936 22 Si 0.967 3.033 23 H -0.288 1.288 24 H -0.293 1.293 25 H -0.267 1.267 26 C 0.184 3.816 27 C -0.108 4.108 28 H 0.046 0.954 29 H 0.048 0.952 30 H 0.099 0.901 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.035 0.965 34 H 0.056 0.944 35 H 0.416 0.584 36 H 0.119 0.881 37 H 0.101 0.899 38 H 0.061 0.939 39 H 0.046 0.954 40 H 0.040 0.960 41 H 0.067 0.933 42 H 0.063 0.937 43 H 0.078 0.922 44 H 0.067 0.933 45 H 0.074 0.926 46 H 0.082 0.918 47 H 0.087 0.913 48 H 0.073 0.927 49 H 0.006 0.994 50 H 0.056 0.944 51 H 0.248 0.752 52 H 0.046 0.954 53 H -0.012 1.012 54 H 0.066 0.934 55 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.896 -6.578 7.669 22.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.326 6.326 3 C 0.006 3.994 4 C -0.053 4.053 5 C 0.017 3.983 6 N -0.360 5.360 7 C 0.284 3.716 8 O -0.475 6.475 9 C -0.165 4.165 10 C -0.092 4.092 11 C -0.157 4.157 12 C -0.164 4.164 13 C -0.159 4.159 14 C -0.151 4.151 15 C -0.148 4.148 16 C 0.013 3.987 17 N -0.332 5.332 18 C -0.392 4.392 19 H 0.086 0.914 20 C -0.247 4.247 21 N -0.582 5.582 22 Si 0.795 3.205 23 H -0.215 1.215 24 H -0.219 1.219 25 H -0.191 1.191 26 C 0.058 3.942 27 C -0.147 4.147 28 H 0.064 0.936 29 H 0.066 0.934 30 H 0.118 0.882 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.053 0.947 34 H 0.074 0.926 35 H 0.259 0.741 36 H 0.138 0.862 37 H 0.119 0.881 38 H 0.080 0.920 39 H 0.065 0.935 40 H 0.059 0.941 41 H 0.086 0.914 42 H 0.082 0.918 43 H 0.097 0.903 44 H 0.086 0.914 45 H 0.093 0.907 46 H 0.101 0.899 47 H 0.105 0.895 48 H 0.092 0.908 49 H 0.024 0.976 50 H 0.075 0.925 51 H 0.057 0.943 52 H 0.065 0.935 53 H 0.006 0.994 54 H 0.085 0.915 55 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -19.213 -6.600 8.208 21.911 hybrid contribution 1.030 0.445 -1.037 1.528 sum -18.183 -6.155 7.171 20.492 Atomic orbital electron populations 1.22900 0.79329 1.03883 1.00576 1.87509 1.21375 1.28242 1.95501 1.22536 0.90925 0.84722 1.01217 1.20692 0.94249 0.96142 0.94173 1.21150 0.96699 0.83432 0.96998 1.46251 1.49977 1.14171 1.25608 1.21434 0.80634 0.88184 0.81314 1.90644 1.39766 1.79032 1.38094 1.21863 1.02961 0.90817 1.00814 1.21491 0.94739 0.96442 0.96556 1.22372 0.96487 0.96980 0.99822 1.22539 0.98804 0.94729 1.00287 1.22357 0.94197 0.97783 1.01524 1.22206 0.97764 0.92088 1.03088 1.21843 0.95582 0.94473 1.02866 1.21072 0.93932 0.94378 0.89350 1.44298 1.44666 1.15531 1.28704 1.19541 1.10380 0.92568 1.16736 0.91408 1.25818 0.98918 0.96739 1.03242 1.70225 1.41705 1.05762 1.40537 0.85280 0.78380 0.77210 0.79677 1.21534 1.21934 1.19124 1.20408 0.89870 0.85813 0.98079 1.21846 0.96600 0.99691 0.96584 0.93566 0.93351 0.88215 0.91969 0.91870 0.94715 0.92562 0.74125 0.86247 0.88087 0.92013 0.93475 0.94082 0.91409 0.91784 0.90317 0.91429 0.90712 0.89947 0.89503 0.90832 0.97616 0.92510 0.94313 0.93508 0.99448 0.91507 0.92518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 11.01 113.37 1.25 1.65 16 2 O -0.41 -8.54 6.73 -148.98 -1.00 -9.54 16 3 C 0.08 1.85 4.80 71.98 0.35 2.19 16 4 C -0.05 -1.58 0.51 -52.15 -0.03 -1.61 16 5 C 0.14 4.90 3.80 86.38 0.33 5.23 16 6 N -0.70 -21.68 4.62 -463.06 -2.14 -23.82 16 7 C 0.50 16.02 7.61 87.66 0.67 16.69 16 8 O -0.59 -24.36 14.78 -3.01 -0.04 -24.40 16 9 C -0.13 -2.80 4.83 29.85 0.14 -2.66 16 10 C -0.07 -1.68 2.55 -10.07 -0.03 -1.71 16 11 C -0.12 -3.27 5.40 31.70 0.17 -3.10 16 12 C -0.13 -2.65 6.91 31.91 0.22 -2.43 16 13 C -0.12 -1.98 6.83 31.67 0.22 -1.76 16 14 C -0.11 -1.82 6.46 31.32 0.20 -1.62 16 15 C -0.11 -3.38 4.91 30.67 0.15 -3.22 16 16 C 0.14 5.78 6.05 86.36 0.52 6.30 16 17 N -0.61 -31.00 3.00 -699.94 -2.10 -33.10 16 18 C -0.26 -14.63 9.58 84.03 0.80 -13.83 16 19 H 0.07 3.66 7.89 -2.91 -0.02 3.64 16 20 C -0.05 -2.97 4.91 84.86 0.42 -2.55 16 21 N -0.94 -57.20 11.22 21.65 0.24 -56.95 16 22 Si 0.97 45.60 29.59 68.60 2.03 47.63 16 23 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 24 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 25 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 26 C 0.18 9.04 4.81 86.22 0.41 9.45 16 27 C -0.11 -3.95 4.57 30.53 0.14 -3.81 16 28 H 0.05 0.57 8.14 -2.38 -0.02 0.55 16 29 H 0.05 0.59 8.14 -2.39 -0.02 0.58 16 30 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.03 1.54 4.99 -2.39 -0.01 1.53 16 34 H 0.06 1.89 8.14 -2.38 -0.02 1.87 16 35 H 0.42 11.24 4.70 -92.70 -0.44 10.81 16 36 H 0.12 1.91 8.14 -2.39 -0.02 1.90 16 37 H 0.10 2.09 8.02 -2.38 -0.02 2.07 16 38 H 0.06 1.60 7.95 -2.39 -0.02 1.59 16 39 H 0.05 1.41 7.77 -2.39 -0.02 1.39 16 40 H 0.04 1.37 7.63 -2.38 -0.02 1.35 16 41 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 42 H 0.06 1.32 8.14 -2.38 -0.02 1.30 16 43 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 44 H 0.07 1.07 8.14 -2.39 -0.02 1.06 16 45 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 46 H 0.08 1.05 7.67 -2.39 -0.02 1.03 16 47 H 0.09 2.18 8.14 -2.38 -0.02 2.16 16 48 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 49 H 0.01 0.27 6.69 -2.39 -0.02 0.25 16 50 H 0.06 2.31 7.93 -2.39 -0.02 2.29 16 51 H 0.25 14.69 8.31 -92.70 -0.77 13.92 16 52 H 0.05 2.63 6.08 -2.39 -0.01 2.62 16 53 H -0.01 -0.69 6.70 -2.39 -0.02 -0.70 16 54 H 0.07 2.25 6.49 -2.39 -0.02 2.24 16 55 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 Total: -1.00 -72.89 407.76 3.34 -69.55 By element: Atomic # 1 Polarization: 26.99 SS G_CDS: 0.41 Total: 27.41 kcal Atomic # 6 Polarization: -2.71 SS G_CDS: 5.94 Total: 3.23 kcal Atomic # 7 Polarization: -109.88 SS G_CDS: -4.00 Total: -113.87 kcal Atomic # 8 Polarization: -32.90 SS G_CDS: -1.05 Total: -33.94 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 2.03 Total: 47.63 kcal Total: -72.89 3.34 -69.55 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162077593.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.604 kcal (2) G-P(sol) polarization free energy of solvation -72.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds