Wall clock time and date at job start Tue Mar 31 2020 22:40:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42904 * 113.99932 * 2 1 4 4 C 1.52998 * 109.47220 * 180.02562 * 3 2 1 5 5 C 1.52991 * 109.46491 * 60.02535 * 4 3 2 6 6 N 1.46503 * 109.47076 * 299.97684 * 5 4 3 7 7 C 1.34780 * 120.00187 * 180.02562 * 6 5 4 8 8 O 1.21276 * 119.99846 * 359.97438 * 7 6 5 9 9 C 1.50700 * 119.99888 * 179.97438 * 7 6 5 10 10 C 1.52996 * 109.47101 * 299.99295 * 9 7 6 11 11 C 1.53004 * 109.47181 * 180.02562 * 10 9 7 12 12 C 1.52996 * 109.46738 * 60.00045 * 11 10 9 13 13 C 1.52996 * 109.47585 * 300.00087 * 12 11 10 14 14 C 1.52996 * 109.46727 * 179.97438 * 9 7 6 15 15 C 1.53042 * 109.45895 * 179.97438 * 4 3 2 16 16 C 1.53192 * 109.31216 * 58.64112 * 15 4 3 17 17 N 1.46930 * 108.77834 * 54.63480 * 16 15 4 18 18 C 1.36932 * 120.62872 * 126.36699 * 17 16 15 19 19 H 1.08002 * 120.00663 * 332.45264 * 18 17 16 20 20 C 1.38819 * 119.99763 * 152.17982 * 18 17 16 21 21 N 1.31619 * 119.99653 * 343.16079 * 20 18 17 22 22 Si 1.86799 * 120.00056 * 163.16209 * 20 18 17 23 23 H 1.48498 * 109.47033 * 89.99898 * 22 20 18 24 24 H 1.48497 * 109.46906 * 209.99748 * 22 20 18 25 25 H 1.48496 * 109.47329 * 330.00182 * 22 20 18 26 26 C 1.46922 * 118.73694 * 306.64373 * 17 16 15 27 27 C 1.52760 * 109.00877 * 53.30539 * 26 17 16 28 28 H 1.08996 * 109.47180 * 60.00463 * 1 2 3 29 29 H 1.09008 * 109.46974 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47595 * 300.00270 * 1 2 3 31 31 H 1.08996 * 109.47265 * 59.99728 * 3 2 1 32 32 H 1.09003 * 109.46761 * 299.99571 * 3 2 1 33 33 H 1.08997 * 109.47452 * 59.96970 * 5 4 3 34 34 H 1.08996 * 109.47457 * 179.97438 * 5 4 3 35 35 H 0.97000 * 120.00052 * 359.97438 * 6 5 4 36 36 H 1.09001 * 109.47139 * 59.99951 * 9 7 6 37 37 H 1.08996 * 109.47236 * 300.00189 * 10 9 7 38 38 H 1.09004 * 109.46737 * 60.00486 * 10 9 7 39 39 H 1.09001 * 109.47048 * 300.00649 * 11 10 9 40 40 H 1.08997 * 109.46869 * 179.97438 * 11 10 9 41 41 H 1.09001 * 109.47150 * 180.02562 * 12 11 10 42 42 H 1.09004 * 109.47530 * 60.00177 * 12 11 10 43 43 H 1.09001 * 109.47350 * 300.00099 * 13 12 11 44 44 H 1.09000 * 109.47654 * 180.02562 * 13 12 11 45 45 H 1.08997 * 109.47768 * 299.99697 * 14 9 7 46 46 H 1.09004 * 109.47530 * 60.00072 * 14 9 7 47 47 H 1.09002 * 109.49976 * 298.69035 * 15 4 3 48 48 H 1.09002 * 109.49778 * 178.59122 * 15 4 3 49 49 H 1.08997 * 109.58711 * 294.84701 * 16 15 4 50 50 H 1.09004 * 109.70548 * 174.49237 * 16 15 4 51 51 H 0.97007 * 119.99830 * 179.97438 * 21 20 18 52 52 H 1.08996 * 109.58958 * 173.14351 * 26 17 16 53 53 H 1.09005 * 109.58698 * 293.56931 * 26 17 16 54 54 H 1.08996 * 109.56719 * 185.54717 * 27 26 17 55 55 H 1.09007 * 109.38352 * 65.51663 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 3.9862 0.4263 -1.2505 6 7 3.3907 -0.9123 -1.2508 7 6 3.6497 -1.7649 -2.2620 8 8 4.3754 -1.4239 -3.1718 9 6 3.0376 -3.1420 -2.2619 10 6 3.4904 -3.9013 -1.0132 11 6 2.8694 -5.2996 -1.0134 12 6 3.3211 -6.0579 -2.2631 13 6 2.8684 -5.2987 -3.5119 14 6 3.4884 -3.9004 -3.5118 15 6 4.1575 2.5830 -0.0013 16 6 3.6766 3.3520 1.2333 17 7 3.9781 2.5580 2.4322 18 6 4.6878 3.1022 3.4691 19 1 5.3932 3.8983 3.2818 20 6 4.4964 2.6346 4.7621 21 7 3.4276 1.9239 5.0533 22 14 5.7558 3.0139 6.0885 23 1 5.3970 4.2879 6.7619 24 1 5.7708 1.9139 7.0859 25 1 7.1008 3.1416 5.4721 26 6 3.5088 1.1671 2.4947 27 6 3.9868 0.4243 1.2484 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.6885 1.8464 0.8899 32 1 1.6885 1.8463 -0.8901 33 1 3.6637 0.9674 -2.1400 34 1 5.0728 0.3406 -1.2514 35 1 2.8106 -1.1852 -0.5228 36 1 1.9510 -3.0566 -2.2612 37 1 4.5770 -3.9866 -1.0139 38 1 3.1689 -3.3607 -0.1228 39 1 1.7827 -5.2146 -1.0130 40 1 3.1924 -5.8407 -0.1240 41 1 2.8784 -7.0539 -2.2636 42 1 4.4078 -6.1429 -2.2637 43 1 1.7817 -5.2136 -3.5115 44 1 3.1898 -5.8391 -4.4022 45 1 3.1656 -3.3594 -4.4013 46 1 4.5750 -3.9858 -3.5130 47 1 3.8543 3.1157 -0.9026 48 1 5.2439 2.4978 0.0235 49 1 2.6014 3.5170 1.1651 50 1 4.1905 4.3116 1.2918 51 1 3.2940 1.5968 5.9568 52 1 3.9140 0.6844 3.3840 53 1 2.4195 1.1503 2.5315 54 1 3.5622 -0.5795 1.2365 55 1 5.0748 0.3590 1.2611 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162080985.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:00 Heat of formation + Delta-G solvation = -104.634911 kcal Electronic energy + Delta-G solvation = -32025.393043 eV Core-core repulsion = 28061.038047 eV Total energy + Delta-G solvation = -3964.354996 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.45260 -40.41423 -38.41762 -38.04145 -36.25254 -34.62601 -32.78396 -31.82091 -31.64113 -31.56615 -28.74103 -28.08999 -26.22511 -25.84991 -24.32394 -23.81142 -23.39514 -22.40074 -21.26305 -20.56812 -19.82542 -18.63661 -18.07387 -17.23004 -16.92650 -16.88819 -16.75786 -16.37489 -15.89533 -15.56115 -15.48688 -15.23234 -15.04871 -14.98239 -14.90561 -14.70505 -14.35671 -14.02948 -13.84394 -13.57984 -13.36772 -13.17395 -13.15372 -13.03640 -12.95686 -12.60094 -12.55027 -12.37354 -12.23122 -12.16968 -12.01395 -11.97082 -11.81526 -11.51045 -11.45065 -11.31937 -11.24480 -11.10037 -10.97111 -10.56771 -10.54847 -10.41978 -9.88676 -8.63364 -7.85775 -5.29614 1.45858 1.48251 1.57153 1.73968 2.29148 2.52071 2.87799 3.29161 3.69219 3.70395 3.75238 3.78718 3.82550 3.91289 4.00015 4.27981 4.30463 4.32229 4.37087 4.45164 4.49366 4.50754 4.53693 4.59453 4.62402 4.63332 4.65247 4.69271 4.73890 4.78409 4.79932 4.90649 4.93076 5.00327 5.05724 5.15510 5.17047 5.20667 5.22907 5.26578 5.27729 5.28527 5.37788 5.38511 5.43215 5.51742 5.57846 5.65361 5.68495 5.81226 6.23713 6.41254 6.78871 7.17766 7.40578 7.89570 8.40055 9.20070 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.014869 B = 0.002971 C = 0.002820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1882.609399 B = 9421.287080 C = 9925.697501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.402 6.402 3 C 0.080 3.920 4 C -0.049 4.049 5 C 0.141 3.859 6 N -0.703 5.703 7 C 0.506 3.494 8 O -0.595 6.595 9 C -0.097 4.097 10 C -0.109 4.109 11 C -0.114 4.114 12 C -0.121 4.121 13 C -0.114 4.114 14 C -0.096 4.096 15 C -0.112 4.112 16 C 0.141 3.859 17 N -0.609 5.609 18 C -0.261 4.261 19 H 0.064 0.936 20 C -0.049 4.049 21 N -0.931 5.931 22 Si 0.961 3.039 23 H -0.285 1.285 24 H -0.293 1.293 25 H -0.273 1.273 26 C 0.186 3.814 27 C -0.110 4.110 28 H 0.049 0.951 29 H 0.104 0.896 30 H 0.033 0.967 31 H 0.044 0.956 32 H 0.060 0.940 33 H 0.064 0.936 34 H 0.052 0.948 35 H 0.416 0.584 36 H 0.112 0.888 37 H 0.053 0.947 38 H 0.068 0.932 39 H 0.076 0.924 40 H 0.070 0.930 41 H 0.076 0.924 42 H 0.054 0.946 43 H 0.073 0.927 44 H 0.070 0.930 45 H 0.057 0.943 46 H 0.049 0.951 47 H 0.088 0.912 48 H 0.062 0.938 49 H 0.021 0.979 50 H 0.055 0.945 51 H 0.249 0.751 52 H 0.047 0.953 53 H 0.003 0.997 54 H 0.065 0.935 55 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.506 -12.760 -15.333 20.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.321 6.321 3 C 0.004 3.996 4 C -0.050 4.050 5 C 0.016 3.984 6 N -0.360 5.360 7 C 0.294 3.706 8 O -0.477 6.477 9 C -0.118 4.118 10 C -0.147 4.147 11 C -0.151 4.151 12 C -0.159 4.159 13 C -0.151 4.151 14 C -0.134 4.134 15 C -0.151 4.151 16 C 0.016 3.984 17 N -0.333 5.333 18 C -0.392 4.392 19 H 0.082 0.918 20 C -0.244 4.244 21 N -0.577 5.577 22 Si 0.790 3.210 23 H -0.212 1.212 24 H -0.220 1.220 25 H -0.198 1.198 26 C 0.060 3.940 27 C -0.149 4.149 28 H 0.068 0.932 29 H 0.123 0.877 30 H 0.052 0.948 31 H 0.062 0.938 32 H 0.078 0.922 33 H 0.082 0.918 34 H 0.070 0.930 35 H 0.259 0.741 36 H 0.130 0.870 37 H 0.072 0.928 38 H 0.087 0.913 39 H 0.094 0.906 40 H 0.089 0.911 41 H 0.095 0.905 42 H 0.073 0.927 43 H 0.092 0.908 44 H 0.089 0.911 45 H 0.075 0.925 46 H 0.068 0.932 47 H 0.106 0.894 48 H 0.081 0.919 49 H 0.039 0.961 50 H 0.073 0.927 51 H 0.058 0.942 52 H 0.065 0.935 53 H 0.021 0.979 54 H 0.084 0.916 55 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -5.952 -12.718 -15.779 21.122 hybrid contribution 0.278 0.719 1.488 1.676 sum -5.674 -11.999 -14.291 19.504 Atomic orbital electron populations 1.22869 0.79690 1.03897 1.00138 1.87444 1.21087 1.28110 1.95428 1.22553 0.92245 0.84632 1.00221 1.20650 0.93883 0.96243 0.94204 1.21208 0.97107 0.83187 0.96847 1.46332 1.49979 1.14069 1.25595 1.21276 0.80464 0.87800 0.81065 1.90635 1.40085 1.79093 1.37879 1.21330 1.02196 0.90016 0.98255 1.21521 1.00577 0.96997 0.95649 1.21519 1.01192 0.93974 0.98454 1.21575 1.00893 0.99162 0.94232 1.21529 1.01030 0.94085 0.98480 1.21289 1.00312 0.96034 0.95757 1.21881 1.00442 0.93874 0.98919 1.21070 0.97016 0.94016 0.86327 1.44286 1.64095 1.08741 1.16166 1.19479 1.14960 1.18132 0.86601 0.91811 1.25715 0.98351 1.01379 0.98969 1.70173 1.26750 1.41527 1.19258 0.85370 0.79576 0.76931 0.79126 1.21201 1.21956 1.19849 1.20409 0.94636 0.84007 0.94942 1.21866 0.99498 0.98462 0.95051 0.93195 0.87722 0.94785 0.93819 0.92186 0.91763 0.93010 0.74087 0.86959 0.92835 0.91332 0.90564 0.91089 0.90494 0.92678 0.90795 0.91084 0.92457 0.93211 0.89391 0.91918 0.96070 0.92694 0.94231 0.93489 0.97876 0.91604 0.93872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.60 11.01 113.37 1.25 1.85 16 2 O -0.40 -10.32 6.77 -148.98 -1.01 -11.33 16 3 C 0.08 2.28 4.04 71.98 0.29 2.57 16 4 C -0.05 -1.50 0.51 -52.16 -0.03 -1.53 16 5 C 0.14 4.08 4.56 86.38 0.39 4.48 16 6 N -0.70 -19.01 4.50 -463.08 -2.08 -21.09 16 7 C 0.51 14.21 7.15 87.66 0.63 14.84 16 8 O -0.60 -21.23 15.98 -3.02 -0.05 -21.27 16 9 C -0.10 -1.98 2.53 -11.54 -0.03 -2.01 16 10 C -0.11 -2.03 5.10 30.59 0.16 -1.87 16 11 C -0.11 -1.59 5.92 30.59 0.18 -1.41 16 12 C -0.12 -1.60 5.92 30.59 0.18 -1.42 16 13 C -0.11 -1.59 5.92 30.58 0.18 -1.41 16 14 C -0.10 -1.92 4.49 30.58 0.14 -1.78 16 15 C -0.11 -3.49 4.90 30.67 0.15 -3.34 16 16 C 0.14 5.50 6.05 86.36 0.52 6.02 16 17 N -0.61 -29.62 3.00 -699.92 -2.10 -31.72 16 18 C -0.26 -14.20 9.58 84.04 0.81 -13.39 16 19 H 0.06 3.39 7.88 -2.91 -0.02 3.37 16 20 C -0.05 -2.69 4.92 84.86 0.42 -2.27 16 21 N -0.93 -54.24 11.18 21.65 0.24 -53.99 16 22 Si 0.96 44.73 29.59 68.60 2.03 46.76 16 23 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 24 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 25 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 26 C 0.19 8.65 4.81 86.22 0.41 9.06 16 27 C -0.11 -4.03 4.58 30.53 0.14 -3.89 16 28 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.10 1.58 8.14 -2.38 -0.02 1.56 16 30 H 0.03 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.04 1.49 4.99 -2.39 -0.01 1.48 16 32 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 34 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 35 H 0.42 10.65 4.10 -92.71 -0.38 10.27 16 36 H 0.11 1.89 8.14 -2.39 -0.02 1.87 16 37 H 0.05 1.13 8.14 -2.39 -0.02 1.12 16 38 H 0.07 1.29 7.56 -2.38 -0.02 1.28 16 39 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 40 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 41 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 42 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 43 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 44 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 45 H 0.06 1.24 8.10 -2.39 -0.02 1.23 16 46 H 0.05 1.17 8.10 -2.39 -0.02 1.15 16 47 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 48 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 49 H 0.02 0.82 6.69 -2.39 -0.02 0.81 16 50 H 0.05 2.12 7.93 -2.39 -0.02 2.10 16 51 H 0.25 14.08 8.31 -92.70 -0.77 13.31 16 52 H 0.05 2.55 6.05 -2.39 -0.01 2.53 16 53 H 0.00 0.16 6.70 -2.38 -0.02 0.14 16 54 H 0.07 2.24 6.49 -2.39 -0.02 2.22 16 55 H 0.04 1.69 8.14 -2.38 -0.02 1.67 16 Total: -1.00 -66.48 405.69 3.29 -63.19 By element: Atomic # 1 Polarization: 24.49 SS G_CDS: 0.47 Total: 24.96 kcal Atomic # 6 Polarization: -1.29 SS G_CDS: 5.79 Total: 4.50 kcal Atomic # 7 Polarization: -102.86 SS G_CDS: -3.94 Total: -106.80 kcal Atomic # 8 Polarization: -31.55 SS G_CDS: -1.06 Total: -32.61 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Total: -66.48 3.29 -63.19 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162080985.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.440 kcal (2) G-P(sol) polarization free energy of solvation -66.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds